RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 CNBPP62633 177 aaKnown RBP9.39□□□□□ -0.91
TCOF1-201ENST00000323668 KRTAP26-1Q6PEX3 210 aa9.39□□□□□ -0.91
TCOF1-201ENST00000323668 DMDP11532 3685 aa9.38□□□□□ -0.91
TCOF1-201ENST00000323668 COL6A5A8TX70 2615 aa9.38□□□□□ -0.91
TCOF1-201ENST00000323668 SPRR1AP35321 89 aa9.37□□□□□ -0.91
TCOF1-201ENST00000323668 ITPR2Q14571 2701 aa9.37□□□□□ -0.91
TCOF1-201ENST00000323668 OXTP01178 125 aa9.36□□□□□ -0.91
TCOF1-201ENST00000323668 RTL8CO15255 209 aa9.36□□□□□ -0.91
TCOF1-201ENST00000323668 RELNP78509 3460 aa9.36□□□□□ -0.91
TCOF1-201ENST00000323668 NF1P21359 2839 aa9.35□□□□□ -0.91
TCOF1-201ENST00000323668 COA5Q86WW8 74 aa9.35□□□□□ -0.91
TCOF1-201ENST00000323668 STAB1Q9NY15 2570 aa9.34□□□□□ -0.91
TCOF1-201ENST00000323668 MRPL34Q9BQ48 92 aaKnown RBP9.34□□□□□ -0.91
TCOF1-201ENST00000323668 FBN2P35556 2912 aa9.33□□□□□ -0.92
TCOF1-201ENST00000323668 DCHS2Q6V1P9 2916 aa9.33□□□□□ -0.92
TCOF1-201ENST00000323668 C8orf17Q9NRJ1 99 aa9.33□□□□□ -0.92
TCOF1-201ENST00000323668 LAMA5O15230 3695 aa9.33□□□□□ -0.92
TCOF1-201ENST00000323668 ACYP2P14621 99 aa9.33□□□□□ -0.92
TCOF1-201ENST00000323668 APCP25054 2843 aa9.33□□□□□ -0.92
TCOF1-201ENST00000323668 FP248Q71RG6 208 aaPredicted RBP9.33□□□□□ -0.92
TCOF1-201ENST00000323668 CYP4F30PQ9H0H9 118 aa9.3□□□□□ -0.92
TCOF1-201ENST00000323668 SPANXA2-OT1Q8N9U9 137 aa9.3□□□□□ -0.92
TCOF1-201ENST00000323668 LOC101927531A0A1B0GV80 90 aa9.3□□□□□ -0.92
TCOF1-201ENST00000323668 CRYBG3Q68DQ2 2970 aa9.29□□□□□ -0.92
TCOF1-201ENST00000323668 CELSR2Q9HCU4 2923 aa9.29□□□□□ -0.92
TCOF1-201ENST00000323668 A0A1B0GVX0 72 aa9.28□□□□□ -0.92
TCOF1-201ENST00000323668 IGKV2D-30A0A075B6S6 120 aa9.27□□□□□ -0.93
TCOF1-201ENST00000323668 IGKV2-30P06310 120 aa9.27□□□□□ -0.93
TCOF1-201ENST00000323668 APLNQ9ULZ1 77 aa9.26□□□□□ -0.93
TCOF1-201ENST00000323668 MXRA5Q9NR99 2828 aa9.26□□□□□ -0.93
TCOF1-201ENST00000323668 ZNF861PO60384 105 aa9.25□□□□□ -0.93
TCOF1-201ENST00000323668 LINC00313P59037 77 aa9.25□□□□□ -0.93
TCOF1-201ENST00000323668 FAM229BQ4G0N7 80 aa9.25□□□□□ -0.93
TCOF1-201ENST00000323668 Q1T7F1 81 aa9.25□□□□□ -0.93
TCOF1-201ENST00000323668 NBEAL1Q6ZS30 2694 aa9.24□□□□□ -0.93
TCOF1-201ENST00000323668 A0A1B0GU69 56 aa9.24□□□□□ -0.93
TCOF1-201ENST00000323668 SPINK1P00995 79 aa9.23□□□□□ -0.93
TCOF1-201ENST00000323668 SPACA4Q8TDM5 124 aa9.23□□□□□ -0.93
TCOF1-201ENST00000323668 A0A087WTM6 91 aa9.22□□□□□ -0.93
TCOF1-201ENST00000323668 TNP2Q05952 138 aa9.22□□□□□ -0.93
TCOF1-201ENST00000323668 NIPBLQ6KC79 2804 aaeCLIP9.22□□□□□ -0.933e-7■■■■■ 27.8
TCOF1-201ENST00000323668 C8orf87E5RJ46 101 aa9.22□□□□□ -0.93
TCOF1-201ENST00000323668 ANAPC11Q9NYG5 84 aa9.22□□□□□ -0.93
TCOF1-201ENST00000323668 K7ERS5 55 aa9.21□□□□□ -0.94
TCOF1-201ENST00000323668 FAM229AH3BQW9 127 aa9.2□□□□□ -0.94
TCOF1-201ENST00000323668 PSORS1C2Q9UIG4 136 aa9.2□□□□□ -0.94
TCOF1-201ENST00000323668 SMG1Q96Q15 3661 aaKnown RBP9.19□□□□□ -0.94
TCOF1-201ENST00000323668 KRTAP4-16G5E9R7 235 aaPredicted RBP9.19□□□□□ -0.94
TCOF1-201ENST00000323668 BAHCC1Q9P281 2608 aa9.19□□□□□ -0.94
TCOF1-201ENST00000323668 IGLV8-61A0A075B6I0 122 aa9.19□□□□□ -0.94
TCOF1-201ENST00000323668 NSD1Q96L73 2696 aaPredicted RBP9.18□□□□□ -0.94
TCOF1-201ENST00000323668 SSBP3-AS1Q7Z2R9 100 aa9.17□□□□□ -0.94
TCOF1-201ENST00000323668 C7orf65Q6ZTY9 151 aa9.17□□□□□ -0.94
TCOF1-201ENST00000323668 SPRR1BP22528 89 aa9.15□□□□□ -0.95
TCOF1-201ENST00000323668 ATP11AUNQ6ZP68 121 aa9.14□□□□□ -0.95
TCOF1-201ENST00000323668 HIVEP1P15822 2718 aa9.14□□□□□ -0.95
TCOF1-201ENST00000323668 CSMD1Q96PZ7 3565 aa9.13□□□□□ -0.95
TCOF1-201ENST00000323668 LINC00472Q9H8W2 130 aa9.13□□□□□ -0.95
TCOF1-201ENST00000323668 IGLV7-46A0A075B6I9 117 aa9.12□□□□□ -0.95
TCOF1-201ENST00000323668 KRTAP1-5Q9BYS1 174 aa9.11□□□□□ -0.95
TCOF1-201ENST00000323668 MMP24-AS1A0A0U1RRL7 71 aa9.11□□□□□ -0.95
TCOF1-201ENST00000323668 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.1□□□□□ -0.95
TCOF1-201ENST00000323668 IGLV7-43P04211 117 aa9.1□□□□□ -0.95
TCOF1-201ENST00000323668 TYMSOSQ8TAI1 123 aa9.08□□□□□ -0.96
TCOF1-201ENST00000323668 Q8N9P0 234 aaPredicted RBP9.07□□□□□ -0.96
TCOF1-201ENST00000323668 Q96NJ1 140 aa9.04□□□□□ -0.96
TCOF1-201ENST00000323668 ZCCHC13Q8WW36 166 aaKnown RBP9.03□□□□□ -0.96
TCOF1-201ENST00000323668 PLA2G1BP04054 148 aaKnown RBP9.03□□□□□ -0.96
TCOF1-201ENST00000323668 PRR26Q8N8Z3 221 aa9.03□□□□□ -0.96
TCOF1-201ENST00000323668 CELSR1Q9NYQ6 3014 aa9.02□□□□□ -0.96
TCOF1-201ENST00000323668 CDC42SE1Q9NRR8 79 aa9.02□□□□□ -0.97
TCOF1-201ENST00000323668 UQCR11O14957 56 aa9.01□□□□□ -0.97
TCOF1-201ENST00000323668 KTN1-AS1Q86SY8 53 aa9.01□□□□□ -0.97
TCOF1-201ENST00000323668 CD164Q04900 197 aa9□□□□□ -0.97
TCOF1-201ENST00000323668 KRTAP29-1A8MX34 341 aaPredicted RBP9□□□□□ -0.97
TCOF1-201ENST00000323668 KRTAP7-1Q8IUC3 87 aa8.99□□□□□ -0.97
TCOF1-201ENST00000323668 STAB2Q8WWQ8 2551 aa8.98□□□□□ -0.97
TCOF1-201ENST00000323668 Q75L30 129 aa8.98□□□□□ -0.97
TCOF1-201ENST00000323668 Q5VV11 94 aa8.97□□□□□ -0.97
TCOF1-201ENST00000323668 LCE6AA0A183 80 aa8.95□□□□□ -0.98
TCOF1-201ENST00000323668 KMT2BQ9UMN6 2715 aaPredicted RBP8.94□□□□□ -0.98
TCOF1-201ENST00000323668 LINC01558Q9Y6Z2 57 aa8.94□□□□□ -0.98
TCOF1-201ENST00000323668 SVEP1Q4LDE5 3571 aa8.94□□□□□ -0.98
TCOF1-201ENST00000323668 PLAC8Q9NZF1 115 aa8.94□□□□□ -0.98
TCOF1-201ENST00000323668 MIR22HGQ0VDD5 57 aa8.93□□□□□ -0.98
TCOF1-201ENST00000323668 WWC2-AS2Q96NR7 200 aa8.92□□□□□ -0.98
TCOF1-201ENST00000323668 HRES1P13985 223 aa8.9□□□□□ -0.98
TCOF1-201ENST00000323668 PANO1I0J062 215 aa8.89□□□□□ -0.99
TCOF1-201ENST00000323668 KRTAP11-1Q8IUC1 163 aa8.87□□□□□ -0.99
TCOF1-201ENST00000323668 LINC00304Q8N9R0 145 aa8.86□□□□□ -0.99
TCOF1-201ENST00000323668 LINC00483Q53H64 154 aa8.84□□□□□ -0.99
TCOF1-201ENST00000323668 LCA10Q71F78 164 aa8.83□□□□□ -1
TCOF1-201ENST00000323668 Q6ZR54 194 aa8.83□□□□□ -1
TCOF1-201ENST00000323668 Q8N1X5 172 aa8.79□□□□□ -1
TCOF1-201ENST00000323668 Q5W150 140 aa8.78□□□□□ -1
TCOF1-201ENST00000323668 SPINK7P58062 85 aa8.78□□□□□ -1
TCOF1-201ENST00000323668 C9orf92A6NGG3 77 aa8.76□□□□□ -1.01
TCOF1-201ENST00000323668 TENM3Q9P273 2699 aa8.75□□□□□ -1.01
TCOF1-201ENST00000323668 SMR3BP02814 79 aaPredicted RBP8.73□□□□□ -1.01
TCOF1-201ENST00000323668 RBM12B-AS1Q9P1G2 102 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms