RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 STAB1Q9NY15 2570 aa8.49□□□□□ -1.05
SKA3-202ENST00000314759 A8MU10 97 aa8.49□□□□□ -1.05
SKA3-202ENST00000314759 WFDC13Q8IUB5 93 aa8.49□□□□□ -1.05
SKA3-202ENST00000314759 NOTCH1P46531 2555 aa8.49□□□□□ -1.05
SKA3-202ENST00000314759 CYP4F30PQ9H0H9 118 aa8.48□□□□□ -1.05
SKA3-202ENST00000314759 A8MUN3 132 aa8.47□□□□□ -1.05
SKA3-202ENST00000314759 PRLHP81277 87 aa8.46□□□□□ -1.06
SKA3-202ENST00000314759 PMAIP1Q13794 54 aa8.45□□□□□ -1.06
SKA3-202ENST00000314759 A0A087WSZ3 146 aa8.45□□□□□ -1.06
SKA3-202ENST00000314759 RPL37AP61513 92 aaKnown RBP8.44□□□□□ -1.06
SKA3-202ENST00000314759 LINC00208Q96KT6 92 aa8.43□□□□□ -1.06
SKA3-202ENST00000314759 DNAH3Q8TD57 4116 aa8.43□□□□□ -1.06
SKA3-202ENST00000314759 IGLV8-61A0A075B6I0 122 aa8.43□□□□□ -1.06
SKA3-202ENST00000314759 A0A096LNI7 61 aa8.43□□□□□ -1.06
SKA3-202ENST00000314759 DNAH10Q8IVF4 4471 aa8.42□□□□□ -1.06
SKA3-202ENST00000314759 IGKV2-24A0A0C4DH68 120 aa8.42□□□□□ -1.06
SKA3-202ENST00000314759 FBN1P35555 2871 aaKnown RBP8.42□□□□□ -1.06
SKA3-202ENST00000314759 SRRM2Q9UQ35 2752 aaKnown RBP8.4□□□□□ -1.06
SKA3-202ENST00000314759 B9D2Q9BPU9 175 aa8.4□□□□□ -1.06
SKA3-202ENST00000314759 C16orf90A8MZG2 172 aa8.4□□□□□ -1.07
SKA3-202ENST00000314759 NDUFB1O75438 58 aa8.4□□□□□ -1.07
SKA3-202ENST00000314759 MP68P56378 58 aa8.4□□□□□ -1.07
SKA3-202ENST00000314759 Q5VV11 94 aa8.4□□□□□ -1.07
SKA3-202ENST00000314759 KRTAP29-1A8MX34 341 aaPredicted RBP8.39□□□□□ -1.07
SKA3-202ENST00000314759 KRTAP24-1Q3LI83 254 aa8.39□□□□□ -1.07
SKA3-202ENST00000314759 HUWE1Q7Z6Z7 4374 aaKnown RBP8.38□□□□□ -1.07
SKA3-202ENST00000314759 NBEAL1Q6ZS30 2694 aa8.37□□□□□ -1.07
SKA3-202ENST00000314759 UBE2AP49459 152 aa8.37□□□□□ -1.07
SKA3-202ENST00000314759 LYSTQ99698 3801 aa8.37□□□□□ -1.07
SKA3-202ENST00000314759 COL6A5A8TX70 2615 aa8.37□□□□□ -1.07
SKA3-202ENST00000314759 KRTAP11-1Q8IUC1 163 aa8.36□□□□□ -1.07
SKA3-202ENST00000314759 KRTAP1-5Q9BYS1 174 aa8.36□□□□□ -1.07
SKA3-202ENST00000314759 H0Y9P7 68 aa8.35□□□□□ -1.07
SKA3-202ENST00000314759 CNBPP62633 177 aaKnown RBP8.35□□□□□ -1.07
SKA3-202ENST00000314759 Q8N9P0 234 aaPredicted RBP8.34□□□□□ -1.07
SKA3-202ENST00000314759 CASC2Q6XLA1 102 aa8.33□□□□□ -1.08
SKA3-202ENST00000314759 DNAH9Q9NYC9 4486 aa8.33□□□□□ -1.08
SKA3-202ENST00000314759 PHF5AQ7RTV0 110 aaKnown RBP8.33□□□□□ -1.08
SKA3-202ENST00000314759 CSMD3Q7Z407 3707 aa8.33□□□□□ -1.08
SKA3-202ENST00000314759 CHKB-CPT1BH3BT56 60 aa8.33□□□□□ -1.08
SKA3-202ENST00000314759 CHTF8P0CG12 524 aa8.32□□□□□ -1.08
SKA3-202ENST00000314759 LINC00472Q9H8W2 130 aa8.32□□□□□ -1.08
SKA3-202ENST00000314759 SPRR1BP22528 89 aa8.31□□□□□ -1.08
SKA3-202ENST00000314759 PRR15LQ9BU68 103 aa8.31□□□□□ -1.08
SKA3-202ENST00000314759 A8MWP4 228 aa8.3□□□□□ -1.08
SKA3-202ENST00000314759 SPANXA2-OT1Q8N9U9 137 aa8.3□□□□□ -1.08
SKA3-202ENST00000314759 H0Y9J4 135 aa8.28□□□□□ -1.08
SKA3-202ENST00000314759 C9orf163Q8N9P6 203 aa8.28□□□□□ -1.08
SKA3-202ENST00000314759 H3BPC8 53 aa8.27□□□□□ -1.09
SKA3-202ENST00000314759 K7EIL1 84 aa8.26□□□□□ -1.09
SKA3-202ENST00000314759 LIMD2Q9BT23 127 aa8.26□□□□□ -1.09
SKA3-202ENST00000314759 STAB2Q8WWQ8 2551 aa8.26□□□□□ -1.09
SKA3-202ENST00000314759 LCA10Q71F78 164 aa8.26□□□□□ -1.09
SKA3-202ENST00000314759 SPTSSBQ8NFR3 76 aa8.25□□□□□ -1.09
SKA3-202ENST00000314759 COA5Q86WW8 74 aa8.23□□□□□ -1.09
SKA3-202ENST00000314759 MMP24-AS1A0A0U1RRL7 71 aa8.23□□□□□ -1.09
SKA3-202ENST00000314759 C14orf177Q52M58 125 aa8.21□□□□□ -1.1
SKA3-202ENST00000314759 PCOTHQ58A44 107 aa8.21□□□□□ -1.1
SKA3-202ENST00000314759 TENM2Q9NT68 2774 aa8.2□□□□□ -1.1
SKA3-202ENST00000314759 UBE2DNLQ8IWF7 75 aa8.2□□□□□ -1.1
SKA3-202ENST00000314759 COL7A1Q02388 2944 aa8.19□□□□□ -1.1
SKA3-202ENST00000314759 A6NED7 52 aa8.19□□□□□ -1.1
SKA3-202ENST00000314759 PANO1I0J062 215 aa8.19□□□□□ -1.1
SKA3-202ENST00000314759 CD164Q04900 197 aa8.19□□□□□ -1.1
SKA3-202ENST00000314759 MGAM2Q2M2H8 2515 aa8.19□□□□□ -1.1
SKA3-202ENST00000314759 Q75L30 129 aa8.19□□□□□ -1.1
SKA3-202ENST00000314759 KRTAP13-1Q8IUC0 172 aa8.19□□□□□ -1.1
SKA3-202ENST00000314759 IGLV7-46A0A075B6I9 117 aa8.18□□□□□ -1.1
SKA3-202ENST00000314759 DNAH7Q8WXX0 4024 aa8.18□□□□□ -1.1
SKA3-202ENST00000314759 LOC101927531A0A1B0GV80 90 aa8.17□□□□□ -1.1
SKA3-202ENST00000314759 Q96NJ1 140 aa8.17□□□□□ -1.1
SKA3-202ENST00000314759 APLNQ9ULZ1 77 aa8.17□□□□□ -1.1
SKA3-202ENST00000314759 KTN1-AS1Q86SY8 53 aa8.16□□□□□ -1.1
SKA3-202ENST00000314759 SPAG11AQ6PDA7 123 aa8.15□□□□□ -1.1
SKA3-202ENST00000314759 IGLV9-49A0A0B4J1Y8 123 aa8.15□□□□□ -1.11
SKA3-202ENST00000314759 ATP11AUNQ6ZP68 121 aa8.15□□□□□ -1.11
SKA3-202ENST00000314759 ASB16-AS1Q495Z4 193 aa8.14□□□□□ -1.11
SKA3-202ENST00000314759 A6NN06 94 aa8.12□□□□□ -1.11
SKA3-202ENST00000314759 RBM12B-AS1Q9P1G2 102 aa8.12□□□□□ -1.11
SKA3-202ENST00000314759 TP53AIP1Q9HCN2 124 aa8.1□□□□□ -1.11
SKA3-202ENST00000314759 C8orf17Q9NRJ1 99 aa8.1□□□□□ -1.11
SKA3-202ENST00000314759 MOBPQ13875 183 aa8.1□□□□□ -1.11
SKA3-202ENST00000314759 CDC42SE1Q9NRR8 79 aa8.09□□□□□ -1.11
SKA3-202ENST00000314759 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.09□□□□□ -1.11
SKA3-202ENST00000314759 DYNC2H1Q8NCM8 4307 aaKnown RBP8.09□□□□□ -1.12
SKA3-202ENST00000314759 PLECQ15149 4684 aaKnown RBP8.08□□□□□ -1.12
SKA3-202ENST00000314759 Q6ZR54 194 aa8.08□□□□□ -1.12
SKA3-202ENST00000314759 Q6ZRN7 208 aaPredicted RBP8.08□□□□□ -1.12
SKA3-202ENST00000314759 PLAC8Q9NZF1 115 aa8.08□□□□□ -1.12
SKA3-202ENST00000314759 LINC01558Q9Y6Z2 57 aa8.08□□□□□ -1.12
SKA3-202ENST00000314759 NBDYA0A0U1RRE5 68 aa8.07□□□□□ -1.12
SKA3-202ENST00000314759 SPINK7P58062 85 aa8.07□□□□□ -1.12
SKA3-202ENST00000314759 IGHV6-1A0A0B4J1U7 121 aa8.07□□□□□ -1.12
SKA3-202ENST00000314759 LINC00483Q53H64 154 aa8.07□□□□□ -1.12
SKA3-202ENST00000314759 SPACA4Q8TDM5 124 aa8.06□□□□□ -1.12
SKA3-202ENST00000314759 HRES1P13985 223 aa8.06□□□□□ -1.12
SKA3-202ENST00000314759 NDUFS5O43920 106 aa8.06□□□□□ -1.12
SKA3-202ENST00000314759 A0A1B0GVX0 72 aa8.05□□□□□ -1.12
SKA3-202ENST00000314759 A0A087X002 238 aa8.03□□□□□ -1.12
SKA3-202ENST00000314759 NOTCH2NLQ7Z3S9 236 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms