RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 HAMPP81172 84 aa12.05□□□□□ -0.48
HOXC4-201ENST00000303406 SPRR4Q96PI1 79 aa12.05□□□□□ -0.48
HOXC4-201ENST00000303406 IGLV5-52A0A0A0MRZ9 124 aa12.04□□□□□ -0.48
HOXC4-201ENST00000303406 A0A1W2PNM2 257 aa12.04□□□□□ -0.48
HOXC4-201ENST00000303406 C3orf84H3BNL1 204 aa12.04□□□□□ -0.48
HOXC4-201ENST00000303406 PLAC8Q9NZF1 115 aa12.04□□□□□ -0.48
HOXC4-201ENST00000303406 A0A087WVE0 104 aa12.03□□□□□ -0.48
HOXC4-201ENST00000303406 FBN3Q75N90 2809 aa12.01□□□□□ -0.49
HOXC4-201ENST00000303406 NREPQ16612 68 aa12.01□□□□□ -0.49
HOXC4-201ENST00000303406 KMT2AQ03164 3969 aa11.98□□□□□ -0.49
HOXC4-201ENST00000303406 HECTD4Q9Y4D8 3996 aa11.97□□□□□ -0.49
HOXC4-201ENST00000303406 CCDC179H3BU77 68 aa11.97□□□□□ -0.49
HOXC4-201ENST00000303406 CRYGAP11844 174 aa11.97□□□□□ -0.49
HOXC4-201ENST00000303406 UQCRQO14949 82 aa11.95□□□□□ -0.5
HOXC4-201ENST00000303406 IGFL1Q6UW32 110 aa11.95□□□□□ -0.5
HOXC4-201ENST00000303406 COX7CP15954 63 aa11.94□□□□□ -0.5
HOXC4-201ENST00000303406 BPY2O14599 106 aa11.91□□□□□ -0.5
HOXC4-201ENST00000303406 SERP2Q8N6R1 65 aa11.91□□□□□ -0.5
HOXC4-201ENST00000303406 ZNF706Q9Y5V0 76 aaPredicted RBP11.9□□□□□ -0.5
HOXC4-201ENST00000303406 PSORS1C2Q9UIG4 136 aa11.89□□□□□ -0.51
HOXC4-201ENST00000303406 LINC00483Q53H64 154 aa11.88□□□□□ -0.51
HOXC4-201ENST00000303406 SCXQ7RTU7 201 aa11.88□□□□□ -0.51
HOXC4-201ENST00000303406 SMIM20Q8N5G0 67 aa11.87□□□□□ -0.51
HOXC4-201ENST00000303406 IGKV4-1P06312 121 aa11.86□□□□□ -0.51
HOXC4-201ENST00000303406 ZNF861PO60384 105 aa11.85□□□□□ -0.51
HOXC4-201ENST00000303406 RPL37AP61513 92 aaKnown RBP11.85□□□□□ -0.51
HOXC4-201ENST00000303406 DNAH8Q96JB1 4490 aa11.83□□□□□ -0.52
HOXC4-201ENST00000303406 C9orf153Q5TBE3 101 aa11.82□□□□□ -0.52
HOXC4-201ENST00000303406 KRTAP10-2P60368 255 aa11.81□□□□□ -0.52
HOXC4-201ENST00000303406 DNAH11Q96DT5 4516 aa11.81□□□□□ -0.52
HOXC4-201ENST00000303406 FRAS1Q86XX4 4008 aa11.8□□□□□ -0.52
HOXC4-201ENST00000303406 TRAV7A0A075B6U4 112 aa11.8□□□□□ -0.52
HOXC4-201ENST00000303406 Q6ZSA8 131 aa11.79□□□□□ -0.52
HOXC4-201ENST00000303406 A0A0G2JQZ4 141 aa11.78□□□□□ -0.52
HOXC4-201ENST00000303406 DNAH5Q8TE73 4624 aa11.77□□□□□ -0.52
HOXC4-201ENST00000303406 A0A087WSZ3 146 aa11.77□□□□□ -0.52
HOXC4-201ENST00000303406 IGLV7-43P04211 117 aa11.76□□□□□ -0.53
HOXC4-201ENST00000303406 DSCR10P59022 87 aa11.76□□□□□ -0.53
HOXC4-201ENST00000303406 Q8N9L7 120 aa11.76□□□□□ -0.53
HOXC4-201ENST00000303406 CIRBP-AS1Q8TBR5 109 aa11.75□□□□□ -0.53
HOXC4-201ENST00000303406 TGP01266 2768 aa11.74□□□□□ -0.53
HOXC4-201ENST00000303406 LCE2BO14633 110 aa11.73□□□□□ -0.53
HOXC4-201ENST00000303406 FAM30AQ9NZY2 134 aa11.73□□□□□ -0.53
HOXC4-201ENST00000303406 KRTAP10-1P60331 282 aa11.7□□□□□ -0.54
HOXC4-201ENST00000303406 IGLV9-49A0A0B4J1Y8 123 aa11.68□□□□□ -0.54
HOXC4-201ENST00000303406 FAT2Q9NYQ8 4349 aa11.68□□□□□ -0.54
HOXC4-201ENST00000303406 K7EQZ3 153 aa11.67□□□□□ -0.54
HOXC4-201ENST00000303406 LINC00472Q9H8W2 130 aa11.66□□□□□ -0.54
HOXC4-201ENST00000303406 PKD1P98161 4303 aa11.65□□□□□ -0.55
HOXC4-201ENST00000303406 J3KT08 172 aa11.64□□□□□ -0.55
HOXC4-201ENST00000303406 LCE6AA0A183 80 aa11.63□□□□□ -0.55
HOXC4-201ENST00000303406 LINC00336Q6ZUF6 198 aa11.63□□□□□ -0.55
HOXC4-201ENST00000303406 OCR1Q9BZK8 76 aa11.63□□□□□ -0.55
HOXC4-201ENST00000303406 SS18L2Q9UHA2 77 aa11.63□□□□□ -0.55
HOXC4-201ENST00000303406 HYDINQ4G0P3 5121 aa11.63□□□□□ -0.55
HOXC4-201ENST00000303406 MOBPQ13875 183 aa11.61□□□□□ -0.55
HOXC4-201ENST00000303406 HCG22E2RYF7 251 aa11.6□□□□□ -0.55
HOXC4-201ENST00000303406 KLKP1Q107X0 134 aa11.6□□□□□ -0.55
HOXC4-201ENST00000303406 C20orf197Q8N268 126 aa11.6□□□□□ -0.55
HOXC4-201ENST00000303406 A8MWP4 228 aa11.59□□□□□ -0.55
HOXC4-201ENST00000303406 TMEM258P61165 79 aa11.57□□□□□ -0.56
HOXC4-201ENST00000303406 DEFB116Q30KQ4 102 aa11.57□□□□□ -0.56
HOXC4-201ENST00000303406 PRR15Q8IV56 129 aa11.57□□□□□ -0.56
HOXC4-201ENST00000303406 CYSTM1Q9H1C7 97 aa11.57□□□□□ -0.56
HOXC4-201ENST00000303406 SACSQ9NZJ4 4579 aa11.57□□□□□ -0.56
HOXC4-201ENST00000303406 SRRM2Q9UQ35 2752 aaKnown RBP11.56□□□□□ -0.56
HOXC4-201ENST00000303406 SSBP3-AS1Q7Z2R9 100 aa11.55□□□□□ -0.56
HOXC4-201ENST00000303406 ANAPC11Q9NYG5 84 aa11.55□□□□□ -0.56
HOXC4-201ENST00000303406 CD164Q04900 197 aa11.55□□□□□ -0.56
HOXC4-201ENST00000303406 Q96NJ1 140 aa11.53□□□□□ -0.56
HOXC4-201ENST00000303406 FAM229BQ4G0N7 80 aa11.52□□□□□ -0.57
HOXC4-201ENST00000303406 KRTAP29-1A8MX34 341 aaPredicted RBP11.5□□□□□ -0.57
HOXC4-201ENST00000303406 NDUFC1O43677 76 aa11.5□□□□□ -0.57
HOXC4-201ENST00000303406 NDUFB1O75438 58 aa11.5□□□□□ -0.57
HOXC4-201ENST00000303406 TMEM254Q8TBM7 123 aa11.5□□□□□ -0.57
HOXC4-201ENST00000303406 HRCT1Q6UXD1 115 aa11.48□□□□□ -0.57
HOXC4-201ENST00000303406 A0A0U1RQV1 116 aa11.45□□□□□ -0.58
HOXC4-201ENST00000303406 H7BZZ5 65 aa11.45□□□□□ -0.58
HOXC4-201ENST00000303406 A0A1B0GVY2 172 aa11.45□□□□□ -0.58
HOXC4-201ENST00000303406 CASC2Q6XLA1 102 aa11.45□□□□□ -0.58
HOXC4-201ENST00000303406 LRP1BQ9NZR2 4599 aa11.45□□□□□ -0.58
HOXC4-201ENST00000303406 WFDC13Q8IUB5 93 aa11.44□□□□□ -0.58
HOXC4-201ENST00000303406 SNURFQ9Y675 71 aa11.44□□□□□ -0.58
HOXC4-201ENST00000303406 ASB16-AS1Q495Z4 193 aa11.43□□□□□ -0.58
HOXC4-201ENST00000303406 MMP24-AS1A0A0U1RRL7 71 aa11.42□□□□□ -0.58
HOXC4-201ENST00000303406 C5orf47Q569G3 176 aa11.42□□□□□ -0.58
HOXC4-201ENST00000303406 KRTAP1-4P0C5Y4 121 aa11.39□□□□□ -0.59
HOXC4-201ENST00000303406 A0A1B0GVX0 72 aa11.38□□□□□ -0.59
HOXC4-201ENST00000303406 RPS28P62857 69 aaKnown RBP11.38□□□□□ -0.59
HOXC4-201ENST00000303406 KRTAP13-2Q52LG2 175 aa11.38□□□□□ -0.59
HOXC4-201ENST00000303406 Q5XG85 94 aa11.38□□□□□ -0.59
HOXC4-201ENST00000303406 A0A087X002 238 aa11.37□□□□□ -0.59
HOXC4-201ENST00000303406 CDK2AP2O75956 126 aa11.37□□□□□ -0.59
HOXC4-201ENST00000303406 FAM236DA0A1B0GTK5 79 aa11.36□□□□□ -0.59
HOXC4-201ENST00000303406 FAM236CP0DP71 79 aa11.36□□□□□ -0.59
HOXC4-201ENST00000303406 C8orf17Q9NRJ1 99 aa11.35□□□□□ -0.59
HOXC4-201ENST00000303406 hDV103S1A0JD37 113 aa11.35□□□□□ -0.59
HOXC4-201ENST00000303406 ATP5EP56381 51 aaPredicted RBP11.35□□□□□ -0.59
HOXC4-201ENST00000303406 SPINK6Q6UWN8 80 aa11.35□□□□□ -0.59
HOXC4-201ENST00000303406 ZCCHC13Q8WW36 166 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms