RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 R4GN34 69 aa4.71□□□□□ -1.66
SCN9A-201ENST00000303354 CHD8Q9HCK8 2581 aa4.71□□□□□ -1.66
SCN9A-201ENST00000303354 DCHS1Q96JQ0 3298 aa4.71□□□□□ -1.66
SCN9A-201ENST00000303354 F8P00451 2351 aa4.7□□□□□ -1.66
SCN9A-201ENST00000303354 SEC61BP60468 96 aaKnown RBP4.7□□□□□ -1.66
SCN9A-201ENST00000303354 TLN2Q9Y4G6 2542 aa4.7□□□□□ -1.66
SCN9A-201ENST00000303354 A0A1B0GU33 70 aa4.7□□□□□ -1.66
SCN9A-201ENST00000303354 NBEAQ8NFP9 2946 aa4.7□□□□□ -1.66
SCN9A-201ENST00000303354 H7BZZ5 65 aa4.68□□□□□ -1.66
SCN9A-201ENST00000303354 LCA10Q71F78 164 aa4.68□□□□□ -1.66
SCN9A-201ENST00000303354 CYP4F30PQ9H0H9 118 aa4.67□□□□□ -1.66
SCN9A-201ENST00000303354 UNC79Q9P2D8 2635 aa4.66□□□□□ -1.66
SCN9A-201ENST00000303354 M0QZ58 72 aa4.66□□□□□ -1.66
SCN9A-201ENST00000303354 FLNCQ14315 2725 aa4.66□□□□□ -1.66
SCN9A-201ENST00000303354 LAMA1P25391 3075 aa4.66□□□□□ -1.66
SCN9A-201ENST00000303354 USP9XQ93008 2570 aaPredicted RBP4.66□□□□□ -1.66
SCN9A-201ENST00000303354 SPTBN4Q9H254 2564 aa4.66□□□□□ -1.66
SCN9A-201ENST00000303354 LINC00483Q53H64 154 aa4.66□□□□□ -1.66
SCN9A-201ENST00000303354 Q5W150 140 aa4.66□□□□□ -1.66
SCN9A-201ENST00000303354 CR1P17927 2039 aa4.65□□□□□ -1.66
SCN9A-201ENST00000303354 A0A087X002 238 aa4.65□□□□□ -1.66
SCN9A-201ENST00000303354 MMP24-AS1A0A0U1RRL7 71 aa4.65□□□□□ -1.67
SCN9A-201ENST00000303354 LUZP6Q538Z0 58 aa4.65□□□□□ -1.67
SCN9A-201ENST00000303354 FAM229BQ4G0N7 80 aa4.64□□□□□ -1.67
SCN9A-201ENST00000303354 CENPEQ02224 2701 aa4.64□□□□□ -1.67
SCN9A-201ENST00000303354 ADM2Q7Z4H4 148 aa4.64□□□□□ -1.67
SCN9A-201ENST00000303354 KLKP1Q107X0 134 aa4.64□□□□□ -1.67
SCN9A-201ENST00000303354 RPS28P62857 69 aaKnown RBP4.63□□□□□ -1.67
SCN9A-201ENST00000303354 PLAC4Q8WY50 150 aa4.63□□□□□ -1.67
SCN9A-201ENST00000303354 SPATA8Q6RVD6 105 aa4.62□□□□□ -1.67
SCN9A-201ENST00000303354 SETD2Q9BYW2 2564 aaPredicted RBP4.62□□□□□ -1.67
SCN9A-201ENST00000303354 CFAP46Q8IYW2 2715 aa4.62□□□□□ -1.67
SCN9A-201ENST00000303354 ITPR3Q14573 2671 aa4.61□□□□□ -1.67
SCN9A-201ENST00000303354 PRAC1Q96KF2 57 aa4.61□□□□□ -1.67
SCN9A-201ENST00000303354 HECTD1Q9ULT8 2610 aa4.6□□□□□ -1.67
SCN9A-201ENST00000303354 LOC400499M0QZD8 3231 aa4.6□□□□□ -1.67
SCN9A-201ENST00000303354 Q1T7F1 81 aa4.59□□□□□ -1.67
SCN9A-201ENST00000303354 OCR1Q9BZK8 76 aa4.59□□□□□ -1.67
SCN9A-201ENST00000303354 KRTAP11-1Q8IUC1 163 aa4.58□□□□□ -1.68
SCN9A-201ENST00000303354 PKD1L2Q7Z442 2459 aa4.58□□□□□ -1.68
SCN9A-201ENST00000303354 A0A1B0GVY2 172 aa4.58□□□□□ -1.68
SCN9A-201ENST00000303354 KRTAP26-1Q6PEX3 210 aa4.58□□□□□ -1.68
SCN9A-201ENST00000303354 MTORP42345 2549 aa4.57□□□□□ -1.68
SCN9A-201ENST00000303354 USP9YO00507 2555 aaPredicted RBP4.57□□□□□ -1.68
SCN9A-201ENST00000303354 OXTP01178 125 aa4.57□□□□□ -1.68
SCN9A-201ENST00000303354 CRYBG3Q68DQ2 2970 aa4.56□□□□□ -1.68
SCN9A-201ENST00000303354 LAMA5O15230 3695 aa4.56□□□□□ -1.68
SCN9A-201ENST00000303354 NOTCH2NLQ7Z3S9 236 aa4.56□□□□□ -1.68
SCN9A-201ENST00000303354 GCN1Q92616 2671 aaKnown RBP4.55□□□□□ -1.68
SCN9A-201ENST00000303354 SPANXA2-OT1Q8N9U9 137 aa4.55□□□□□ -1.68
SCN9A-201ENST00000303354 Q6ZR54 194 aa4.55□□□□□ -1.68
SCN9A-201ENST00000303354 AKAP13Q12802 2813 aa4.55□□□□□ -1.68
SCN9A-201ENST00000303354 DMAC1Q96GE9 116 aa4.55□□□□□ -1.68
SCN9A-201ENST00000303354 MAP1AP78559 2803 aaPredicted RBP4.54□□□□□ -1.68
SCN9A-201ENST00000303354 H1FX-AS1Q4G0G2 97 aa4.54□□□□□ -1.68
SCN9A-201ENST00000303354 SPRR1AP35321 89 aa4.54□□□□□ -1.68
SCN9A-201ENST00000303354 BOD1L1Q8NFC6 3051 aa4.54□□□□□ -1.68
SCN9A-201ENST00000303354 KTN1-AS1Q86SY8 53 aa4.54□□□□□ -1.68
SCN9A-201ENST00000303354 LINC00472Q9H8W2 130 aa4.54□□□□□ -1.68
SCN9A-201ENST00000303354 APCP25054 2843 aa4.54□□□□□ -1.68
SCN9A-201ENST00000303354 MGAQ8IWI9 3026 aa4.53□□□□□ -1.68
SCN9A-201ENST00000303354 CYSTM1Q9H1C7 97 aa4.53□□□□□ -1.68
SCN9A-201ENST00000303354 ATMQ13315 3056 aa4.52□□□□□ -1.69
SCN9A-201ENST00000303354 COL12A1Q99715 3063 aa4.52□□□□□ -1.69
SCN9A-201ENST00000303354 FRYLO94915 3013 aa4.5□□□□□ -1.69
SCN9A-201ENST00000303354 RELNP78509 3460 aa4.49□□□□□ -1.69
SCN9A-201ENST00000303354 USP24Q9UPU5 2620 aa4.49□□□□□ -1.69
SCN9A-201ENST00000303354 C20orf166-AS1Q96NR2 134 aa4.49□□□□□ -1.69
SCN9A-201ENST00000303354 TACC2O95359 2948 aa4.48□□□□□ -1.69
SCN9A-201ENST00000303354 SETXQ7Z333 2677 aaKnown RBP4.48□□□□□ -1.69
SCN9A-201ENST00000303354 FP248Q71RG6 208 aaPredicted RBP4.48□□□□□ -1.69
SCN9A-201ENST00000303354 ZFHX4Q86UP3 3567 aa4.48□□□□□ -1.69
SCN9A-201ENST00000303354 FRYQ5TBA9 3013 aa4.47□□□□□ -1.69
SCN9A-201ENST00000303354 MXRA5Q9NR99 2828 aa4.47□□□□□ -1.69
SCN9A-201ENST00000303354 A8MU10 97 aa4.46□□□□□ -1.7
SCN9A-201ENST00000303354 MGAM2Q2M2H8 2515 aa4.45□□□□□ -1.7
SCN9A-201ENST00000303354 SPRR1BP22528 89 aa4.44□□□□□ -1.7
SCN9A-201ENST00000303354 RPL37P61927 97 aaKnown RBP4.44□□□□□ -1.7
SCN9A-201ENST00000303354 A8MUU9 505 aa4.44□□□□□ -1.7
SCN9A-201ENST00000303354 HRNRQ86YZ3 2850 aaPredicted RBP4.44□□□□□ -1.7
SCN9A-201ENST00000303354 CSMD1Q96PZ7 3565 aa4.43□□□□□ -1.7
SCN9A-201ENST00000303354 LINC01558Q9Y6Z2 57 aa4.43□□□□□ -1.7
SCN9A-201ENST00000303354 Q75L30 129 aa4.42□□□□□ -1.7
SCN9A-201ENST00000303354 TNRC18O15417 2968 aaPredicted RBP4.42□□□□□ -1.7
SCN9A-201ENST00000303354 ROMO1P60602 79 aa4.41□□□□□ -1.7
SCN9A-201ENST00000303354 KRTAP13-2Q52LG2 175 aa4.41□□□□□ -1.7
SCN9A-201ENST00000303354 NF1P21359 2839 aa4.41□□□□□ -1.7
SCN9A-201ENST00000303354 EPG5Q9HCE0 2579 aa4.41□□□□□ -1.7
SCN9A-201ENST00000303354 TEX15Q9BXT5 2789 aa4.41□□□□□ -1.7
SCN9A-201ENST00000303354 ADGRG4Q8IZF6 3080 aa4.4□□□□□ -1.7
SCN9A-201ENST00000303354 Q6ZRN7 208 aaPredicted RBP4.4□□□□□ -1.7
SCN9A-201ENST00000303354 Q5VV11 94 aa4.4□□□□□ -1.7
SCN9A-201ENST00000303354 ASH1LQ9NR48 2969 aaKnown RBP4.4□□□□□ -1.7
SCN9A-201ENST00000303354 KRTAP7-1Q8IUC3 87 aa4.4□□□□□ -1.7
SCN9A-201ENST00000303354 LRBAP50851 2863 aa4.39□□□□□ -1.71
SCN9A-201ENST00000303354 UTP20O75691 2785 aaKnown RBP4.39□□□□□ -1.71
SCN9A-201ENST00000303354 NBPF19A0A087WUL8 3843 aa4.39□□□□□ -1.71
SCN9A-201ENST00000303354 TEP1Q99973 2627 aaKnown RBP4.38□□□□□ -1.71
SCN9A-201ENST00000303354 DMXL2Q8TDJ6 3036 aa4.38□□□□□ -1.71
SCN9A-201ENST00000303354 ZANQ9Y493 2812 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms