RNA–Protein interactions for RNA: ENST00000302085.8

SMAD1-201, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD1, Length 1,966 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-201ENST00000302085 Q6ZVQ6 151 aa13.62□□□□□ -0.23
SMAD1-201ENST00000302085 F8WEM9 126 aa13.62□□□□□ -0.23
SMAD1-201ENST00000302085 Q6ZSA8 131 aa13.62□□□□□ -0.23
SMAD1-201ENST00000302085 FAT2Q9NYQ8 4349 aa13.6□□□□□ -0.23
SMAD1-201ENST00000302085 SRRM2Q9UQ35 2752 aaKnown RBP13.59□□□□□ -0.23
SMAD1-201ENST00000302085 DNAH5Q8TE73 4624 aa13.59□□□□□ -0.23
SMAD1-201ENST00000302085 IGLV8-61A0A075B6I0 122 aa13.59□□□□□ -0.23
SMAD1-201ENST00000302085 PKD1P98161 4303 aa13.57□□□□□ -0.24
SMAD1-201ENST00000302085 A0A0G2JQZ4 141 aa13.57□□□□□ -0.24
SMAD1-201ENST00000302085 SCXQ7RTU7 201 aa13.57□□□□□ -0.24
SMAD1-201ENST00000302085 ATP5EP2Q5VTU8 51 aa13.56□□□□□ -0.24
SMAD1-201ENST00000302085 Q8NBF4 154 aa13.56□□□□□ -0.24
SMAD1-201ENST00000302085 ZNF861PO60384 105 aa13.56□□□□□ -0.24
SMAD1-201ENST00000302085 IGFL1Q6UW32 110 aa13.56□□□□□ -0.24
SMAD1-201ENST00000302085 DNAH8Q96JB1 4490 aa13.54□□□□□ -0.24
SMAD1-201ENST00000302085 SPRR4Q96PI1 79 aa13.54□□□□□ -0.24
SMAD1-201ENST00000302085 HAMPP81172 84 aa13.54□□□□□ -0.24
SMAD1-201ENST00000302085 SACSQ9NZJ4 4579 aa13.53□□□□□ -0.24
SMAD1-201ENST00000302085 A0A1B0GW54 56 aa13.52□□□□□ -0.25
SMAD1-201ENST00000302085 IGLV7-43P04211 117 aa13.51□□□□□ -0.25
SMAD1-201ENST00000302085 LINC00336Q6ZUF6 198 aa13.5□□□□□ -0.25
SMAD1-201ENST00000302085 LINC00483Q53H64 154 aa13.49□□□□□ -0.25
SMAD1-201ENST00000302085 CRYGAP11844 174 aa13.49□□□□□ -0.25
SMAD1-201ENST00000302085 NREPQ16612 68 aa13.49□□□□□ -0.25
SMAD1-201ENST00000302085 FAM236AA0A1B0GUQ0 79 aa13.47□□□□□ -0.25
SMAD1-201ENST00000302085 FAM236BA0A1B0GV22 79 aa13.47□□□□□ -0.25
SMAD1-201ENST00000302085 ZNF706Q9Y5V0 76 aaPredicted RBP13.47□□□□□ -0.25
SMAD1-201ENST00000302085 A0A087WVE0 104 aa13.47□□□□□ -0.25
SMAD1-201ENST00000302085 HIST1H4AP62805 103 aaKnown RBP13.46□□□□□ -0.25
SMAD1-201ENST00000302085 CXCL6P80162 114 aa13.46□□□□□ -0.25
SMAD1-201ENST00000302085 ANAPC13Q9BS18 74 aa13.43□□□□□ -0.26
SMAD1-201ENST00000302085 ANAPC11Q9NYG5 84 aa13.41□□□□□ -0.26
SMAD1-201ENST00000302085 A0A1B0GVY2 172 aa13.41□□□□□ -0.26
SMAD1-201ENST00000302085 IGLV9-49A0A0B4J1Y8 123 aa13.4□□□□□ -0.27
SMAD1-201ENST00000302085 BPY2O14599 106 aa13.36□□□□□ -0.27
SMAD1-201ENST00000302085 C9orf153Q5TBE3 101 aa13.36□□□□□ -0.27
SMAD1-201ENST00000302085 A0A087WSZ3 146 aa13.35□□□□□ -0.27
SMAD1-201ENST00000302085 RYR2Q92736 4967 aa13.32□□□□□ -0.28
SMAD1-201ENST00000302085 Q8N9L7 120 aa13.31□□□□□ -0.28
SMAD1-201ENST00000302085 RPL37AP61513 92 aaKnown RBP13.31□□□□□ -0.28
SMAD1-201ENST00000302085 MOBPQ13875 183 aa13.3□□□□□ -0.28
SMAD1-201ENST00000302085 LRP1BQ9NZR2 4599 aa13.29□□□□□ -0.28
SMAD1-201ENST00000302085 IGKV4-1P06312 121 aa13.27□□□□□ -0.28
SMAD1-201ENST00000302085 ATOX1O00244 68 aa13.26□□□□□ -0.29
SMAD1-201ENST00000302085 DSCR10P59022 87 aa13.25□□□□□ -0.29
SMAD1-201ENST00000302085 DEFB116Q30KQ4 102 aa13.23□□□□□ -0.29
SMAD1-201ENST00000302085 PKHD1P08F94 4074 aa13.22□□□□□ -0.29
SMAD1-201ENST00000302085 HRCT1Q6UXD1 115 aa13.21□□□□□ -0.29
SMAD1-201ENST00000302085 KMT2CQ8NEZ4 4911 aaKnown RBP13.21□□□□□ -0.29
SMAD1-201ENST00000302085 CCDC179H3BU77 68 aa13.2□□□□□ -0.3
SMAD1-201ENST00000302085 LINC00472Q9H8W2 130 aa13.18□□□□□ -0.3
SMAD1-201ENST00000302085 DYNC1H1Q14204 4646 aaKnown RBP13.17□□□□□ -0.3
SMAD1-201ENST00000302085 K7EQZ3 153 aa13.16□□□□□ -0.3
SMAD1-201ENST00000302085 SMR3BP02814 79 aaPredicted RBP13.14□□□□□ -0.31
SMAD1-201ENST00000302085 A0A087X002 238 aa13.14□□□□□ -0.31
SMAD1-201ENST00000302085 SSBP3-AS1Q7Z2R9 100 aa13.14□□□□□ -0.31
SMAD1-201ENST00000302085 KRTAP1-4P0C5Y4 121 aa13.13□□□□□ -0.31
SMAD1-201ENST00000302085 SERP2Q8N6R1 65 aa13.12□□□□□ -0.31
SMAD1-201ENST00000302085 COX7CP15954 63 aa13.12□□□□□ -0.31
SMAD1-201ENST00000302085 FAM229BQ4G0N7 80 aa13.12□□□□□ -0.31
SMAD1-201ENST00000302085 KRTAP13-2Q52LG2 175 aa13.12□□□□□ -0.31
SMAD1-201ENST00000302085 VPS13BQ7Z7G8 4022 aa13.1□□□□□ -0.31
SMAD1-201ENST00000302085 Q96NJ1 140 aa13.09□□□□□ -0.31
SMAD1-201ENST00000302085 UQCRQO14949 82 aa13.09□□□□□ -0.31
SMAD1-201ENST00000302085 SS18L2Q9UHA2 77 aa13.07□□□□□ -0.32
SMAD1-201ENST00000302085 SPINK6Q6UWN8 80 aa13.06□□□□□ -0.32
SMAD1-201ENST00000302085 CD164Q04900 197 aa13.05□□□□□ -0.32
SMAD1-201ENST00000302085 A8MWP4 228 aa13.03□□□□□ -0.32
SMAD1-201ENST00000302085 J3KT08 172 aa13.03□□□□□ -0.32
SMAD1-201ENST00000302085 TRAV7A0A075B6U4 112 aa13.02□□□□□ -0.32
SMAD1-201ENST00000302085 KRTAP10-4P60372 401 aaPredicted RBP13.02□□□□□ -0.32
SMAD1-201ENST00000302085 SMIM20Q8N5G0 67 aa13.02□□□□□ -0.32
SMAD1-201ENST00000302085 PLA2G1BP04054 148 aaKnown RBP13.01□□□□□ -0.33
SMAD1-201ENST00000302085 PRR15Q8IV56 129 aa13.01□□□□□ -0.33
SMAD1-201ENST00000302085 HCG22E2RYF7 251 aa12.99□□□□□ -0.33
SMAD1-201ENST00000302085 APOBP04114 4563 aaKnown RBP12.98□□□□□ -0.33
SMAD1-201ENST00000302085 OCR1Q9BZK8 76 aa12.95□□□□□ -0.34
SMAD1-201ENST00000302085 WFDC13Q8IUB5 93 aa12.92□□□□□ -0.34
SMAD1-201ENST00000302085 KRTAP29-1A8MX34 341 aaPredicted RBP12.92□□□□□ -0.34
SMAD1-201ENST00000302085 NDUFB1O75438 58 aa12.92□□□□□ -0.34
SMAD1-201ENST00000302085 RYR3Q15413 4870 aa12.91□□□□□ -0.34
SMAD1-201ENST00000302085 TYMSOSQ8TAI1 123 aa12.9□□□□□ -0.34
SMAD1-201ENST00000302085 ASB16-AS1Q495Z4 193 aa12.89□□□□□ -0.35
SMAD1-201ENST00000302085 CYSTM1Q9H1C7 97 aa12.89□□□□□ -0.35
SMAD1-201ENST00000302085 PRR26Q8N8Z3 221 aa12.87□□□□□ -0.35
SMAD1-201ENST00000302085 CASC2Q6XLA1 102 aa12.87□□□□□ -0.35
SMAD1-201ENST00000302085 MMP24-AS1A0A0U1RRL7 71 aa12.86□□□□□ -0.35
SMAD1-201ENST00000302085 Q5XG85 94 aa12.86□□□□□ -0.35
SMAD1-201ENST00000302085 C20orf197Q8N268 126 aa12.86□□□□□ -0.35
SMAD1-201ENST00000302085 A0A1B0GVX0 72 aa12.85□□□□□ -0.35
SMAD1-201ENST00000302085 CDK2AP2O75956 126 aa12.84□□□□□ -0.35
SMAD1-201ENST00000302085 FAT1Q14517 4588 aa12.83□□□□□ -0.36
SMAD1-201ENST00000302085 IGHV6-1A0A0B4J1U7 121 aa12.82□□□□□ -0.36
SMAD1-201ENST00000302085 C8orf17Q9NRJ1 99 aa12.81□□□□□ -0.36
SMAD1-201ENST00000302085 C4orf48Q5BLP8 95 aa12.8□□□□□ -0.36
SMAD1-201ENST00000302085 C1orf195Q5TG92 126 aa12.8□□□□□ -0.36
SMAD1-201ENST00000302085 hDV103S1A0JD37 113 aa12.78□□□□□ -0.36
SMAD1-201ENST00000302085 NOTCH2NLQ7Z3S9 236 aa12.78□□□□□ -0.36
SMAD1-201ENST00000302085 FAM229AH3BQW9 127 aa12.77□□□□□ -0.37
SMAD1-201ENST00000302085 SNURFQ9Y675 71 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms