RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SNRPEP62304 92 aaKnown RBP7.71□□□□□ -1.18
CCDC88B-201ENST00000301897 PCP2Q8IVA1 136 aa7.71□□□□□ -1.18
CCDC88B-201ENST00000301897 A6NDN8 102 aa7.7□□□□□ -1.18
CCDC88B-201ENST00000301897 IFITM1P13164 125 aa7.7□□□□□ -1.18
CCDC88B-201ENST00000301897 S100A2P29034 98 aa7.69□□□□□ -1.18
CCDC88B-201ENST00000301897 SCGB1D4Q6XE38 83 aa7.69□□□□□ -1.18
CCDC88B-201ENST00000301897 Q6ZVH6 145 aa7.69□□□□□ -1.18
CCDC88B-201ENST00000301897 Q75L30 129 aa7.69□□□□□ -1.18
CCDC88B-201ENST00000301897 S100A6P06703 90 aa7.67□□□□□ -1.18
CCDC88B-201ENST00000301897 Q6JHZ5 121 aa7.67□□□□□ -1.18
CCDC88B-201ENST00000301897 MUSTN1Q8IVN3 82 aa7.66□□□□□ -1.18
CCDC88B-201ENST00000301897 OBSCN-AS1Q96MR7 158 aa7.66□□□□□ -1.18
CCDC88B-201ENST00000301897 TRAV13-2A0A0B4J235 113 aa7.65□□□□□ -1.18
CCDC88B-201ENST00000301897 CLEC2BQ92478 149 aa7.64□□□□□ -1.19
CCDC88B-201ENST00000301897 TRBV7-7A0A0K0K1E9 115 aa7.63□□□□□ -1.19
CCDC88B-201ENST00000301897 VAMP3Q15836 100 aa7.63□□□□□ -1.19
CCDC88B-201ENST00000301897 SMIM11BQ8TCY0 68 aa7.62□□□□□ -1.19
CCDC88B-201ENST00000301897 HSBP1L1C9JCN9 74 aa7.6□□□□□ -1.19
CCDC88B-201ENST00000301897 KRTAP9-8Q9BYQ0 159 aa7.6□□□□□ -1.19
CCDC88B-201ENST00000301897 USH2AO75445 5202 aa7.6□□□□□ -1.19
CCDC88B-201ENST00000301897 SSPOA2VEC9 5147 aa7.59□□□□□ -1.19
CCDC88B-201ENST00000301897 TRBV20-1A0A075B6N2 111 aa7.59□□□□□ -1.19
CCDC88B-201ENST00000301897 SCGB1D1O95968 90 aa7.58□□□□□ -1.2
CCDC88B-201ENST00000301897 IGFL1Q6UW32 110 aa7.58□□□□□ -1.2
CCDC88B-201ENST00000301897 LINC00575Q6W349 94 aa7.58□□□□□ -1.2
CCDC88B-201ENST00000301897 hADV29S1A0JD25 119 aa7.57□□□□□ -1.2
CCDC88B-201ENST00000301897 LST1O00453 97 aa7.57□□□□□ -1.2
CCDC88B-201ENST00000301897 OCIAD2Q56VL3 154 aa7.57□□□□□ -1.2
CCDC88B-201ENST00000301897 Q6ZQY7 126 aa7.57□□□□□ -1.2
CCDC88B-201ENST00000301897 Q96NJ1 140 aa7.57□□□□□ -1.2
CCDC88B-201ENST00000301897 DLEU1O43261 78 aa7.55□□□□□ -1.2
CCDC88B-201ENST00000301897 COX8AP10176 69 aa7.55□□□□□ -1.2
CCDC88B-201ENST00000301897 PPDPFLQ8WWR9 84 aa7.55□□□□□ -1.2
CCDC88B-201ENST00000301897 C20orf166-AS1Q96NR2 134 aa7.54□□□□□ -1.2
CCDC88B-201ENST00000301897 SS18L2Q9UHA2 77 aa7.53□□□□□ -1.2
CCDC88B-201ENST00000301897 FCGBPQ9Y6R7 5405 aaPredicted RBP7.52□□□□□ -1.21
CCDC88B-201ENST00000301897 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.52□□□□□ -1.21
CCDC88B-201ENST00000301897 A8MUU9 505 aa7.51□□□□□ -1.21
CCDC88B-201ENST00000301897 SNHG12Q9BXW3 62 aa7.5□□□□□ -1.21
CCDC88B-201ENST00000301897 C14orf144Q96I85 54 aa7.48□□□□□ -1.21
CCDC88B-201ENST00000301897 HIST1H4GQ99525 98 aa7.48□□□□□ -1.21
CCDC88B-201ENST00000301897 HIGD1BQ9P298 99 aa7.48□□□□□ -1.21
CCDC88B-201ENST00000301897 SPATA45Q537H7 98 aa7.47□□□□□ -1.21
CCDC88B-201ENST00000301897 MT2AP02795 61 aa7.46□□□□□ -1.22
CCDC88B-201ENST00000301897 BVES-AS1Q5T3Y7 98 aa7.46□□□□□ -1.22
CCDC88B-201ENST00000301897 PAM16Q9Y3D7 125 aa7.46□□□□□ -1.22
CCDC88B-201ENST00000301897 FAM236DA0A1B0GTK5 79 aa7.45□□□□□ -1.22
CCDC88B-201ENST00000301897 FAM236CP0DP71 79 aa7.45□□□□□ -1.22
CCDC88B-201ENST00000301897 C2orf91Q6ZV80 131 aa7.45□□□□□ -1.22
CCDC88B-201ENST00000301897 H3BUT2 72 aa7.44□□□□□ -1.22
CCDC88B-201ENST00000301897 TEN1Q86WV5 123 aa7.44□□□□□ -1.22
CCDC88B-201ENST00000301897 VAMP8Q9BV40 100 aa7.44□□□□□ -1.22
CCDC88B-201ENST00000301897 KRTAP19-1Q8IUB9 90 aa7.43□□□□□ -1.22
CCDC88B-201ENST00000301897 C12orf57Q99622 126 aa7.43□□□□□ -1.22
CCDC88B-201ENST00000301897 SNCGO76070 127 aa7.42□□□□□ -1.22
CCDC88B-201ENST00000301897 PYY3Q5JQD4 70 aa7.42□□□□□ -1.22
CCDC88B-201ENST00000301897 RBM12B-AS1Q9P1G2 102 aa7.41□□□□□ -1.22
CCDC88B-201ENST00000301897 A0A0B4J2C4 111 aa7.4□□□□□ -1.22
CCDC88B-201ENST00000301897 LCE2BO14633 110 aa7.4□□□□□ -1.22
CCDC88B-201ENST00000301897 KRTAP10-10P60014 251 aa7.4□□□□□ -1.22
CCDC88B-201ENST00000301897 LINC00846Q9NV44 126 aa7.4□□□□□ -1.22
CCDC88B-201ENST00000301897 MT1FP04733 61 aa7.39□□□□□ -1.23
CCDC88B-201ENST00000301897 A0A087WSZ3 146 aa7.38□□□□□ -1.23
CCDC88B-201ENST00000301897 CEND1Q8N111 149 aa7.38□□□□□ -1.23
CCDC88B-201ENST00000301897 KRTAP9-3Q9BYQ3 159 aa7.38□□□□□ -1.23
CCDC88B-201ENST00000301897 DSCR10P59022 87 aa7.37□□□□□ -1.23
CCDC88B-201ENST00000301897 RAB37Q96AX2 223 aa7.36□□□□□ -1.23
CCDC88B-201ENST00000301897 GHRHP01286 108 aa7.35□□□□□ -1.23
CCDC88B-201ENST00000301897 LINC00313P59037 77 aa7.35□□□□□ -1.23
CCDC88B-201ENST00000301897 MPLKIPQ8TAP9 179 aa7.35□□□□□ -1.23
CCDC88B-201ENST00000301897 SIGMAR1Q99720 223 aa7.35□□□□□ -1.23
CCDC88B-201ENST00000301897 H0YGX0 51 aa7.34□□□□□ -1.23
CCDC88B-201ENST00000301897 FXYD2P54710 66 aa7.34□□□□□ -1.23
CCDC88B-201ENST00000301897 NDUFV3P56181 108 aaKnown RBP7.34□□□□□ -1.23
CCDC88B-201ENST00000301897 KRTAP16-1A8MUX0 517 aa7.33□□□□□ -1.24
CCDC88B-201ENST00000301897 FAM218AQ96MZ4 157 aa7.33□□□□□ -1.24
CCDC88B-201ENST00000301897 PRO1854Q9UHT4 67 aa7.33□□□□□ -1.24
CCDC88B-201ENST00000301897 H3BMG7 143 aa7.31□□□□□ -1.24
CCDC88B-201ENST00000301897 HRES1P13985 223 aa7.31□□□□□ -1.24
CCDC88B-201ENST00000301897 TMA7Q9Y2S6 64 aaKnown RBP7.31□□□□□ -1.24
CCDC88B-201ENST00000301897 MACF1Q9UPN3 7388 aaKnown RBP7.3□□□□□ -1.24
CCDC88B-201ENST00000301897 TMEM238LA0A1B0GVL6 79 aa7.3□□□□□ -1.24
CCDC88B-201ENST00000301897 A6NJY4 79 aa7.3□□□□□ -1.24
CCDC88B-201ENST00000301897 MTURNQ8N3F0 131 aa7.3□□□□□ -1.24
CCDC88B-201ENST00000301897 A0A1B0GX51 115 aa7.29□□□□□ -1.24
CCDC88B-201ENST00000301897 HSD52Q0P140 79 aa7.29□□□□□ -1.24
CCDC88B-201ENST00000301897 IGKV4-1P06312 121 aa7.27□□□□□ -1.25
CCDC88B-201ENST00000301897 A0A1W2PNM2 257 aa7.26□□□□□ -1.25
CCDC88B-201ENST00000301897 TRIAP1O43715 76 aa7.26□□□□□ -1.25
CCDC88B-201ENST00000301897 NOTCH2NLQ7Z3S9 236 aa7.26□□□□□ -1.25
CCDC88B-201ENST00000301897 UQCR10Q9UDW1 63 aa7.26□□□□□ -1.25
CCDC88B-201ENST00000301897 SYNE2Q8WXH0 6885 aaKnown RBP7.26□□□□□ -1.25
CCDC88B-201ENST00000301897 FABP2P12104 132 aa7.25□□□□□ -1.25
CCDC88B-201ENST00000301897 KRTAP19-6Q3LI70 58 aa7.24□□□□□ -1.25
CCDC88B-201ENST00000301897 TRBV7-4A0A0J9YYF1 115 aa7.23□□□□□ -1.25
CCDC88B-201ENST00000301897 K7ERJ3 54 aa7.21□□□□□ -1.26
CCDC88B-201ENST00000301897 ANKRD29Q8N6D5 301 aa7.2□□□□□ -1.26
CCDC88B-201ENST00000301897 IGHV6-1A0A0B4J1U7 121 aa7.19□□□□□ -1.26
CCDC88B-201ENST00000301897 H3BQ85 93 aa7.19□□□□□ -1.26
CCDC88B-201ENST00000301897 LINC00472Q9H8W2 130 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 162.3 ms