RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 IGFL1Q6UW32 110 aa3.21□□□□□ -1.9
CSMD3-201ENST00000297405 Q8N377 158 aa3.2□□□□□ -1.9
CSMD3-201ENST00000297405 Q6ZSN1 163 aa3.2□□□□□ -1.9
CSMD3-201ENST00000297405 NOTCH2NLQ7Z3S9 236 aa3.2□□□□□ -1.9
CSMD3-201ENST00000297405 IGLV5-37A0A075B6J1 123 aa3.2□□□□□ -1.9
CSMD3-201ENST00000297405 TYMSOSQ8TAI1 123 aa3.19□□□□□ -1.9
CSMD3-201ENST00000297405 NBEAQ8NFP9 2946 aa3.19□□□□□ -1.9
CSMD3-201ENST00000297405 HRES1P13985 223 aa3.19□□□□□ -1.9
CSMD3-201ENST00000297405 SPACA4Q8TDM5 124 aa3.19□□□□□ -1.9
CSMD3-201ENST00000297405 CSAG1Q6PB30 78 aa3.18□□□□□ -1.9
CSMD3-201ENST00000297405 ZNF861PO60384 105 aa3.18□□□□□ -1.9
CSMD3-201ENST00000297405 ROMO1P60602 79 aa3.18□□□□□ -1.9
CSMD3-201ENST00000297405 Q96NJ1 140 aa3.18□□□□□ -1.9
CSMD3-201ENST00000297405 GOLGB1Q14789 3259 aaKnown RBP3.17□□□□□ -1.9
CSMD3-201ENST00000297405 CNBPP62633 177 aaKnown RBP3.15□□□□□ -1.9
CSMD3-201ENST00000297405 PRUNE2Q8WUY3 3088 aa3.15□□□□□ -1.91
CSMD3-201ENST00000297405 FAM229BQ4G0N7 80 aa3.14□□□□□ -1.91
CSMD3-201ENST00000297405 ZZEF1O43149 2961 aa3.14□□□□□ -1.91
CSMD3-201ENST00000297405 C9orf163Q8N9P6 203 aa3.14□□□□□ -1.91
CSMD3-201ENST00000297405 ADGRG4Q8IZF6 3080 aa3.14□□□□□ -1.91
CSMD3-201ENST00000297405 RPL37P61927 97 aaKnown RBP3.14□□□□□ -1.91
CSMD3-201ENST00000297405 INAFM1C9JVW0 142 aa3.14□□□□□ -1.91
CSMD3-201ENST00000297405 SPATA8Q6RVD6 105 aa3.13□□□□□ -1.91
CSMD3-201ENST00000297405 LINC00304Q8N9R0 145 aa3.13□□□□□ -1.91
CSMD3-201ENST00000297405 LAMA1P25391 3075 aa3.13□□□□□ -1.91
CSMD3-201ENST00000297405 SPINK7P58062 85 aa3.13□□□□□ -1.91
CSMD3-201ENST00000297405 DSCR10P59022 87 aa3.13□□□□□ -1.91
CSMD3-201ENST00000297405 C10orf142B7Z368 130 aa3.12□□□□□ -1.91
CSMD3-201ENST00000297405 TENM2Q9NT68 2774 aa3.12□□□□□ -1.91
CSMD3-201ENST00000297405 Q6ZR54 194 aa3.12□□□□□ -1.91
CSMD3-201ENST00000297405 C18orf65Q6ZTR6 163 aa3.12□□□□□ -1.91
CSMD3-201ENST00000297405 UTRNP46939 3433 aa3.12□□□□□ -1.91
CSMD3-201ENST00000297405 C19orf73Q9NVV2 129 aa3.12□□□□□ -1.91
CSMD3-201ENST00000297405 DMXL1Q9Y485 3027 aa3.11□□□□□ -1.91
CSMD3-201ENST00000297405 LINC00612Q8N6U2 182 aa3.11□□□□□ -1.91
CSMD3-201ENST00000297405 PRR26Q8N8Z3 221 aa3.1□□□□□ -1.91
CSMD3-201ENST00000297405 A0A1W2PNM2 257 aa3.1□□□□□ -1.91
CSMD3-201ENST00000297405 PLA2G5P39877 138 aa3.1□□□□□ -1.91
CSMD3-201ENST00000297405 NBDYA0A0U1RRE5 68 aa3.1□□□□□ -1.91
CSMD3-201ENST00000297405 A6NN06 94 aa3.1□□□□□ -1.91
CSMD3-201ENST00000297405 ZANQ9Y493 2812 aa3.09□□□□□ -1.91
CSMD3-201ENST00000297405 C10orf99Q6UWK7 81 aa3.09□□□□□ -1.91
CSMD3-201ENST00000297405 ANAPC11Q9NYG5 84 aa3.08□□□□□ -1.92
CSMD3-201ENST00000297405 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.07□□□□□ -1.92
CSMD3-201ENST00000297405 WDFY4Q6ZS81 3184 aa3.07□□□□□ -1.92
CSMD3-201ENST00000297405 RTL8CO15255 209 aa3.07□□□□□ -1.92
CSMD3-201ENST00000297405 M0R2N4 97 aa3.07□□□□□ -1.92
CSMD3-201ENST00000297405 KRTAP25-1Q3LHN0 102 aa3.07□□□□□ -1.92
CSMD3-201ENST00000297405 LCE6AA0A183 80 aa3.07□□□□□ -1.92
CSMD3-201ENST00000297405 A0A1W2PNU3 283 aaPredicted RBP3.06□□□□□ -1.92
CSMD3-201ENST00000297405 VWFP04275 2813 aa3.06□□□□□ -1.92
CSMD3-201ENST00000297405 SPRR1BP22528 89 aa3.06□□□□□ -1.92
CSMD3-201ENST00000297405 XIRP2A4UGR9 3374 aa3.06□□□□□ -1.92
CSMD3-201ENST00000297405 ZCCHC13Q8WW36 166 aaKnown RBP3.06□□□□□ -1.92
CSMD3-201ENST00000297405 LINC00472Q9H8W2 130 aa3.06□□□□□ -1.92
CSMD3-201ENST00000297405 REV3LO60673 3130 aa3.06□□□□□ -1.92
CSMD3-201ENST00000297405 ZNF575Q86XF7 245 aa3.06□□□□□ -1.92
CSMD3-201ENST00000297405 A0A0D9SG42 100 aa3.05□□□□□ -1.92
CSMD3-201ENST00000297405 SPRR1AP35321 89 aa3.05□□□□□ -1.92
CSMD3-201ENST00000297405 COL7A1Q02388 2944 aa3.05□□□□□ -1.92
CSMD3-201ENST00000297405 BOD1L1Q8NFC6 3051 aa3.05□□□□□ -1.92
CSMD3-201ENST00000297405 PP632Q6XCG6 107 aa3.05□□□□□ -1.92
CSMD3-201ENST00000297405 HRNRQ86YZ3 2850 aaPredicted RBP3.04□□□□□ -1.92
CSMD3-201ENST00000297405 MXRA5Q9NR99 2828 aa3.04□□□□□ -1.92
CSMD3-201ENST00000297405 ATMQ13315 3056 aa3.04□□□□□ -1.92
CSMD3-201ENST00000297405 MMP24-AS1A0A0U1RRL7 71 aa3.04□□□□□ -1.92
CSMD3-201ENST00000297405 M0QZ58 72 aa3.04□□□□□ -1.92
CSMD3-201ENST00000297405 PRAC1Q96KF2 57 aa3.04□□□□□ -1.92
CSMD3-201ENST00000297405 PSORS1C2Q9UIG4 136 aa3.03□□□□□ -1.92
CSMD3-201ENST00000297405 H1FX-AS1Q4G0G2 97 aa3.03□□□□□ -1.92
CSMD3-201ENST00000297405 FREM2Q5SZK8 3169 aa3.03□□□□□ -1.92
CSMD3-201ENST00000297405 OXTP01178 125 aa3.03□□□□□ -1.92
CSMD3-201ENST00000297405 FAM168BA1KXE4 195 aa3.03□□□□□ -1.92
CSMD3-201ENST00000297405 FBN2P35556 2912 aa3.03□□□□□ -1.93
CSMD3-201ENST00000297405 PKD1L1Q8TDX9 2849 aa3.02□□□□□ -1.93
CSMD3-201ENST00000297405 R4GN34 69 aa3.02□□□□□ -1.93
CSMD3-201ENST00000297405 CYSTM1Q9H1C7 97 aa3.02□□□□□ -1.93
CSMD3-201ENST00000297405 CELSR1Q9NYQ6 3014 aa3.01□□□□□ -1.93
CSMD3-201ENST00000297405 S4R3F8 94 aa3.01□□□□□ -1.93
CSMD3-201ENST00000297405 A0A096LNT2 108 aa3.01□□□□□ -1.93
CSMD3-201ENST00000297405 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
CSMD3-201ENST00000297405 Q8N1X5 172 aa3.01□□□□□ -1.93
CSMD3-201ENST00000297405 UNC80Q8N2C7 3258 aa3□□□□□ -1.93
CSMD3-201ENST00000297405 TENM4Q6N022 2769 aa3□□□□□ -1.93
CSMD3-201ENST00000297405 Q5W150 140 aa3□□□□□ -1.93
CSMD3-201ENST00000297405 GIG44P09565 113 aaPredicted RBP2.99□□□□□ -1.93
CSMD3-201ENST00000297405 PLAC4Q8WY50 150 aa2.99□□□□□ -1.93
CSMD3-201ENST00000297405 OTOGQ6ZRI0 2925 aa2.99□□□□□ -1.93
CSMD3-201ENST00000297405 RANBP2P49792 3224 aaKnown RBP2.99□□□□□ -1.93
CSMD3-201ENST00000297405 HTTP42858 3142 aa2.99□□□□□ -1.93
CSMD3-201ENST00000297405 ZFHX3Q15911 3703 aa2.99□□□□□ -1.93
CSMD3-201ENST00000297405 C20orf166-AS1Q96NR2 134 aa2.98□□□□□ -1.93
CSMD3-201ENST00000297405 A0A1W2PPR1 153 aa2.98□□□□□ -1.93
CSMD3-201ENST00000297405 PANO1I0J062 215 aa2.97□□□□□ -1.93
CSMD3-201ENST00000297405 RPS29P62273 56 aaKnown RBP2.96□□□□□ -1.93
CSMD3-201ENST00000297405 USP34Q70CQ2 3546 aa2.96□□□□□ -1.94
CSMD3-201ENST00000297405 A0A087WTM6 91 aa2.95□□□□□ -1.94
CSMD3-201ENST00000297405 KRTAP29-1A8MX34 341 aaPredicted RBP2.95□□□□□ -1.94
CSMD3-201ENST00000297405 Q6ZSA8 131 aa2.95□□□□□ -1.94
CSMD3-201ENST00000297405 CFAP47Q6ZTR5 3102 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms