RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TP53AIP1Q9HCN2 124 aa10.06□□□□□ -0.8
SHH-201ENST00000297261 PHF5AQ7RTV0 110 aaKnown RBP10.05□□□□□ -0.8
SHH-201ENST00000297261 OCR1Q9BZK8 76 aa10.05□□□□□ -0.8
SHH-201ENST00000297261 LINC00588Q9Y4M8 146 aa10.04□□□□□ -0.8
SHH-201ENST00000297261 A0A1B0GU69 56 aa10.04□□□□□ -0.8
SHH-201ENST00000297261 EPM2AB3EWF7 344 aa10.03□□□□□ -0.8
SHH-201ENST00000297261 IGFL1Q6UW32 110 aa10.03□□□□□ -0.8
SHH-201ENST00000297261 IGLV1-50A0A075B6I6 118 aa10.03□□□□□ -0.8
SHH-201ENST00000297261 C15orf56Q8N910 161 aa10.03□□□□□ -0.8
SHH-201ENST00000297261 CHTF8P0CG12 524 aa10.01□□□□□ -0.81
SHH-201ENST00000297261 MOBPQ13875 183 aa10.01□□□□□ -0.81
SHH-201ENST00000297261 A8MWP4 228 aa10□□□□□ -0.81
SHH-201ENST00000297261 CYP4F30PQ9H0H9 118 aa10□□□□□ -0.81
SHH-201ENST00000297261 IGKV2D-30A0A075B6S6 120 aa10□□□□□ -0.81
SHH-201ENST00000297261 IGKV2-30P06310 120 aa10□□□□□ -0.81
SHH-201ENST00000297261 FAM229BQ4G0N7 80 aa9.99□□□□□ -0.81
SHH-201ENST00000297261 CD164Q04900 197 aa9.99□□□□□ -0.81
SHH-201ENST00000297261 Q8NDZ9 215 aa9.99□□□□□ -0.81
SHH-201ENST00000297261 KMT2BQ9UMN6 2715 aaPredicted RBP9.99□□□□□ -0.81
SHH-201ENST00000297261 LY6G6CO95867 125 aa9.98□□□□□ -0.81
SHH-201ENST00000297261 MDFIQ99750 246 aa9.98□□□□□ -0.81
SHH-201ENST00000297261 LOC101927531A0A1B0GV80 90 aa9.98□□□□□ -0.81
SHH-201ENST00000297261 ACYP2P14621 99 aa9.98□□□□□ -0.81
SHH-201ENST00000297261 ATP11AUNQ6ZP68 121 aa9.97□□□□□ -0.81
SHH-201ENST00000297261 PRR15Q8IV56 129 aa9.97□□□□□ -0.81
SHH-201ENST00000297261 DNAH10OSP0CZ25 163 aa9.96□□□□□ -0.81
SHH-201ENST00000297261 IGLV8-61A0A075B6I0 122 aa9.96□□□□□ -0.82
SHH-201ENST00000297261 NBEAL1Q6ZS30 2694 aa9.95□□□□□ -0.82
SHH-201ENST00000297261 NIPBLQ6KC79 2804 aaeCLIP9.95□□□□□ -0.82
SHH-201ENST00000297261 CSMD2Q7Z408 3487 aa9.93□□□□□ -0.82
SHH-201ENST00000297261 C16orf90A8MZG2 172 aa9.93□□□□□ -0.82
SHH-201ENST00000297261 IGLV5-48A0A075B6I7 105 aa9.92□□□□□ -0.82
SHH-201ENST00000297261 KTN1-AS1Q86SY8 53 aa9.91□□□□□ -0.82
SHH-201ENST00000297261 PDZD2O15018 2839 aa9.9□□□□□ -0.82
SHH-201ENST00000297261 C8orf87E5RJ46 101 aa9.89□□□□□ -0.83
SHH-201ENST00000297261 DSCR10P59022 87 aa9.88□□□□□ -0.83
SHH-201ENST00000297261 Q1T7F1 81 aa9.88□□□□□ -0.83
SHH-201ENST00000297261 IGLV5-52A0A0A0MRZ9 124 aa9.86□□□□□ -0.83
SHH-201ENST00000297261 C7orf65Q6ZTY9 151 aa9.86□□□□□ -0.83
SHH-201ENST00000297261 MRPL34Q9BQ48 92 aaKnown RBP9.86□□□□□ -0.83
SHH-201ENST00000297261 CASC10Q5T4H9 136 aa9.84□□□□□ -0.83
SHH-201ENST00000297261 C8orf17Q9NRJ1 99 aa9.83□□□□□ -0.84
SHH-201ENST00000297261 NBPF19A0A087WUL8 3843 aa9.82□□□□□ -0.84
SHH-201ENST00000297261 NBDYA0A0U1RRE5 68 aa9.82□□□□□ -0.84
SHH-201ENST00000297261 SPACA4Q8TDM5 124 aa9.81□□□□□ -0.84
SHH-201ENST00000297261 SPANXA2-OT1Q8N9U9 137 aa9.8□□□□□ -0.84
SHH-201ENST00000297261 ZFHX3Q15911 3703 aa9.79□□□□□ -0.84
SHH-201ENST00000297261 C1orf134Q5TEV5 83 aa9.79□□□□□ -0.84
SHH-201ENST00000297261 CUBNO60494 3623 aa9.79□□□□□ -0.84
SHH-201ENST00000297261 TLX1NBP0CAT3 122 aa9.78□□□□□ -0.84
SHH-201ENST00000297261 PRR26Q8N8Z3 221 aa9.77□□□□□ -0.85
SHH-201ENST00000297261 SPRR4Q96PI1 79 aa9.77□□□□□ -0.85
SHH-201ENST00000297261 PLA2G2DQ9UNK4 145 aa9.77□□□□□ -0.85
SHH-201ENST00000297261 LINC00313P59037 77 aa9.76□□□□□ -0.85
SHH-201ENST00000297261 UQCR11O14957 56 aa9.76□□□□□ -0.85
SHH-201ENST00000297261 LCA10Q71F78 164 aa9.75□□□□□ -0.85
SHH-201ENST00000297261 CDC42SE1Q9NRR8 79 aa9.75□□□□□ -0.85
SHH-201ENST00000297261 A0A1B0GVX0 72 aa9.74□□□□□ -0.85
SHH-201ENST00000297261 APLNQ9ULZ1 77 aa9.73□□□□□ -0.85
SHH-201ENST00000297261 ANAPC11Q9NYG5 84 aa9.73□□□□□ -0.85
SHH-201ENST00000297261 Q8N9P0 234 aaPredicted RBP9.73□□□□□ -0.85
SHH-201ENST00000297261 VPS13CQ709C8 3753 aa9.73□□□□□ -0.85
SHH-201ENST00000297261 OTOGQ6ZRI0 2925 aa9.72□□□□□ -0.85
SHH-201ENST00000297261 RBM12B-AS1Q9P1G2 102 aa9.72□□□□□ -0.85
SHH-201ENST00000297261 FAM229AH3BQW9 127 aa9.7□□□□□ -0.86
SHH-201ENST00000297261 MIR22HGQ0VDD5 57 aa9.7□□□□□ -0.86
SHH-201ENST00000297261 TENM1Q9UKZ4 2725 aa9.67□□□□□ -0.86
SHH-201ENST00000297261 Q5VV11 94 aa9.67□□□□□ -0.86
SHH-201ENST00000297261 STAB2Q8WWQ8 2551 aa9.64□□□□□ -0.87
SHH-201ENST00000297261 RTL8CO15255 209 aa9.64□□□□□ -0.87
SHH-201ENST00000297261 IGLV7-46A0A075B6I9 117 aa9.63□□□□□ -0.87
SHH-201ENST00000297261 DMBT1Q9UGM3 2413 aaPredicted RBP9.63□□□□□ -0.87
SHH-201ENST00000297261 IGLV5-37A0A075B6J1 123 aa9.63□□□□□ -0.87
SHH-201ENST00000297261 CNBPP62633 177 aaKnown RBP9.63□□□□□ -0.87
SHH-201ENST00000297261 WWC2-AS2Q96NR7 200 aa9.62□□□□□ -0.87
SHH-201ENST00000297261 VWFP04275 2813 aa9.62□□□□□ -0.87
SHH-201ENST00000297261 C9orf163Q8N9P6 203 aa9.62□□□□□ -0.87
SHH-201ENST00000297261 Q75L30 129 aa9.61□□□□□ -0.87
SHH-201ENST00000297261 KRTAP26-1Q6PEX3 210 aa9.59□□□□□ -0.87
SHH-201ENST00000297261 Q96NJ1 140 aa9.58□□□□□ -0.88
SHH-201ENST00000297261 PRAC1Q96KF2 57 aa9.57□□□□□ -0.88
SHH-201ENST00000297261 SSBP3-AS1Q7Z2R9 100 aa9.56□□□□□ -0.88
SHH-201ENST00000297261 SPRR1AP35321 89 aa9.56□□□□□ -0.88
SHH-201ENST00000297261 ZNF861PO60384 105 aa9.55□□□□□ -0.88
SHH-201ENST00000297261 A0A087WTM6 91 aa9.55□□□□□ -0.88
SHH-201ENST00000297261 KRTAP1-5Q9BYS1 174 aa9.54□□□□□ -0.88
SHH-201ENST00000297261 MMP24-AS1A0A0U1RRL7 71 aa9.53□□□□□ -0.88
SHH-201ENST00000297261 LINC01558Q9Y6Z2 57 aa9.52□□□□□ -0.89
SHH-201ENST00000297261 AKAP9Q99996 3911 aa9.52□□□□□ -0.89
SHH-201ENST00000297261 SPINK7P58062 85 aa9.52□□□□□ -0.89
SHH-201ENST00000297261 PSORS1C2Q9UIG4 136 aa9.51□□□□□ -0.89
SHH-201ENST00000297261 SPINT4Q6UDR6 99 aa9.5□□□□□ -0.89
SHH-201ENST00000297261 ANK3Q12955 4377 aaKnown RBP9.5□□□□□ -0.89
SHH-201ENST00000297261 TYMSOSQ8TAI1 123 aa9.5□□□□□ -0.89
SHH-201ENST00000297261 HRES1P13985 223 aa9.48□□□□□ -0.89
SHH-201ENST00000297261 FLG2Q5D862 2391 aaPredicted RBP9.47□□□□□ -0.89
SHH-201ENST00000297261 TNP2Q05952 138 aa9.46□□□□□ -0.89
SHH-201ENST00000297261 LINC00472Q9H8W2 130 aa9.46□□□□□ -0.89
SHH-201ENST00000297261 Q8N1X5 172 aa9.45□□□□□ -0.9
SHH-201ENST00000297261 TENM3Q9P273 2699 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms