RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 Q6ZRX8 168 aa10.6□□□□□ -0.71
CTCF-201ENST00000264010 DMBT1Q9UGM3 2413 aaPredicted RBP10.59□□□□□ -0.71
CTCF-201ENST00000264010 FAM168BA1KXE4 195 aa10.59□□□□□ -0.71
CTCF-201ENST00000264010 SPINK6Q6UWN8 80 aa10.59□□□□□ -0.71
CTCF-201ENST00000264010 IGLV1-50A0A075B6I6 118 aa10.56□□□□□ -0.72
CTCF-201ENST00000264010 TRBV7-4A0A0J9YYF1 115 aa10.56□□□□□ -0.72
CTCF-201ENST00000264010 PRR15Q8IV56 129 aa10.56□□□□□ -0.72
CTCF-201ENST00000264010 RPL37AP61513 92 aaKnown RBP10.53□□□□□ -0.72
CTCF-201ENST00000264010 PKD1L1Q8TDX9 2849 aa10.53□□□□□ -0.72
CTCF-201ENST00000264010 C16orf90A8MZG2 172 aa10.52□□□□□ -0.73
CTCF-201ENST00000264010 hDV103S1A0JD37 113 aa10.52□□□□□ -0.73
CTCF-201ENST00000264010 IGLV5-37A0A075B6J1 123 aa10.51□□□□□ -0.73
CTCF-201ENST00000264010 K7EQZ3 153 aa10.51□□□□□ -0.73
CTCF-201ENST00000264010 IGLV8-61A0A075B6I0 122 aa10.5□□□□□ -0.73
CTCF-201ENST00000264010 A0A0G2JQZ4 141 aa10.5□□□□□ -0.73
CTCF-201ENST00000264010 A0A1W2PNN7 141 aa10.5□□□□□ -0.73
CTCF-201ENST00000264010 ST20-AS1Q8NBB2 130 aa10.5□□□□□ -0.73
CTCF-201ENST00000264010 Q8N377 158 aa10.49□□□□□ -0.73
CTCF-201ENST00000264010 PRLHP81277 87 aa10.48□□□□□ -0.73
CTCF-201ENST00000264010 BAHCC1Q9P281 2608 aa10.48□□□□□ -0.73
CTCF-201ENST00000264010 A0A1B0GW54 56 aa10.47□□□□□ -0.73
CTCF-201ENST00000264010 PRAC1Q96KF2 57 aa10.47□□□□□ -0.73
CTCF-201ENST00000264010 RETNLBQ9BQ08 111 aa10.47□□□□□ -0.73
CTCF-201ENST00000264010 APLNQ9ULZ1 77 aa10.47□□□□□ -0.73
CTCF-201ENST00000264010 NBDYA0A0U1RRE5 68 aa10.46□□□□□ -0.73
CTCF-201ENST00000264010 ATP11AUNQ6ZP68 121 aa10.46□□□□□ -0.73
CTCF-201ENST00000264010 C7orf65Q6ZTY9 151 aa10.46□□□□□ -0.74
CTCF-201ENST00000264010 SPINK1P00995 79 aa10.44□□□□□ -0.74
CTCF-201ENST00000264010 CNBPP62633 177 aaKnown RBP10.43□□□□□ -0.74
CTCF-201ENST00000264010 Q8NBF4 154 aa10.43□□□□□ -0.74
CTCF-201ENST00000264010 TRRAPQ9Y4A5 3859 aa10.42□□□□□ -0.74
CTCF-201ENST00000264010 IGLV9-49A0A0B4J1Y8 123 aa10.42□□□□□ -0.74
CTCF-201ENST00000264010 LCA10Q71F78 164 aa10.42□□□□□ -0.74
CTCF-201ENST00000264010 COA5Q86WW8 74 aa10.42□□□□□ -0.74
CTCF-201ENST00000264010 IGHV6-1A0A0B4J1U7 121 aa10.42□□□□□ -0.74
CTCF-201ENST00000264010 ERC2-IT1O76042 136 aa10.42□□□□□ -0.74
CTCF-201ENST00000264010 NBEAL1Q6ZS30 2694 aa10.42□□□□□ -0.74
CTCF-201ENST00000264010 Q9BRP9 147 aa10.41□□□□□ -0.74
CTCF-201ENST00000264010 EPM2AB3EWF7 344 aa10.41□□□□□ -0.74
CTCF-201ENST00000264010 CHTF8P0CG12 524 aa10.4□□□□□ -0.74
CTCF-201ENST00000264010 PHF5AQ7RTV0 110 aaKnown RBP10.4□□□□□ -0.74
CTCF-201ENST00000264010 LOC101927531A0A1B0GV80 90 aa10.4□□□□□ -0.74
CTCF-201ENST00000264010 ZNF706Q9Y5V0 76 aaPredicted RBP10.39□□□□□ -0.75
CTCF-201ENST00000264010 C8orf87E5RJ46 101 aa10.39□□□□□ -0.75
CTCF-201ENST00000264010 TENM3Q9P273 2699 aa10.39□□□□□ -0.75
CTCF-201ENST00000264010 IGLV5-48A0A075B6I7 105 aa10.39□□□□□ -0.75
CTCF-201ENST00000264010 A8MU10 97 aa10.38□□□□□ -0.75
CTCF-201ENST00000264010 SPRR1AP35321 89 aa10.38□□□□□ -0.75
CTCF-201ENST00000264010 LINC00476Q8WZB0 136 aa10.38□□□□□ -0.75
CTCF-201ENST00000264010 OCR1Q9BZK8 76 aa10.38□□□□□ -0.75
CTCF-201ENST00000264010 CSMD3Q7Z407 3707 aa10.37□□□□□ -0.75
CTCF-201ENST00000264010 C9orf163Q8N9P6 203 aa10.36□□□□□ -0.75
CTCF-201ENST00000264010 FLG2Q5D862 2391 aaPredicted RBP10.35□□□□□ -0.75
CTCF-201ENST00000264010 KRTAP1-5Q9BYS1 174 aa10.35□□□□□ -0.75
CTCF-201ENST00000264010 Q1T7F1 81 aa10.34□□□□□ -0.75
CTCF-201ENST00000264010 CYP4F30PQ9H0H9 118 aa10.33□□□□□ -0.76
CTCF-201ENST00000264010 A0A1B0GU69 56 aa10.32□□□□□ -0.76
CTCF-201ENST00000264010 A0A1W2PNM2 257 aa10.32□□□□□ -0.76
CTCF-201ENST00000264010 LY6G6CO95867 125 aa10.29□□□□□ -0.76
CTCF-201ENST00000264010 KRTAP4-16G5E9R7 235 aaPredicted RBP10.29□□□□□ -0.76
CTCF-201ENST00000264010 STAB2Q8WWQ8 2551 aa10.27□□□□□ -0.76
CTCF-201ENST00000264010 C1orf134Q5TEV5 83 aa10.27□□□□□ -0.77
CTCF-201ENST00000264010 IGFL1Q6UW32 110 aa10.27□□□□□ -0.77
CTCF-201ENST00000264010 IGLV5-52A0A0A0MRZ9 124 aa10.26□□□□□ -0.77
CTCF-201ENST00000264010 Q5VV11 94 aa10.26□□□□□ -0.77
CTCF-201ENST00000264010 RTL8CO15255 209 aa10.22□□□□□ -0.77
CTCF-201ENST00000264010 SPRR4Q96PI1 79 aa10.22□□□□□ -0.77
CTCF-201ENST00000264010 K7ERS5 55 aa10.22□□□□□ -0.77
CTCF-201ENST00000264010 KRTAP7-1Q8IUC3 87 aa10.22□□□□□ -0.77
CTCF-201ENST00000264010 CDC42SE1Q9NRR8 79 aa10.22□□□□□ -0.77
CTCF-201ENST00000264010 FBN1P35555 2871 aaKnown RBP10.22□□□□□ -0.77
CTCF-201ENST00000264010 Q8N9P0 234 aaPredicted RBP10.22□□□□□ -0.77
CTCF-201ENST00000264010 A0A087WTM6 91 aa10.21□□□□□ -0.77
CTCF-201ENST00000264010 PRR26Q8N8Z3 221 aa10.21□□□□□ -0.77
CTCF-201ENST00000264010 LINC01554Q52M75 96 aa10.2□□□□□ -0.78
CTCF-201ENST00000264010 TNP2Q05952 138 aa10.18□□□□□ -0.78
CTCF-201ENST00000264010 LINC00313P59037 77 aa10.18□□□□□ -0.78
CTCF-201ENST00000264010 SRRM2Q9UQ35 2752 aaKnown RBP10.18□□□□□ -0.78
CTCF-201ENST00000264010 ANK2Q01484 3957 aa10.15□□□□□ -0.78
CTCF-201ENST00000264010 IGKV2D-30A0A075B6S6 120 aa10.11□□□□□ -0.79
CTCF-201ENST00000264010 IGKV2-30P06310 120 aa10.11□□□□□ -0.79
CTCF-201ENST00000264010 SPINK7P58062 85 aa10.11□□□□□ -0.79
CTCF-201ENST00000264010 DSCR10P59022 87 aa10.1□□□□□ -0.79
CTCF-201ENST00000264010 SSBP3-AS1Q7Z2R9 100 aa10.1□□□□□ -0.79
CTCF-201ENST00000264010 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.1□□□□□ -0.79
CTCF-201ENST00000264010 MOBPQ13875 183 aa10.09□□□□□ -0.79
CTCF-201ENST00000264010 SPINT4Q6UDR6 99 aa10.09□□□□□ -0.79
CTCF-201ENST00000264010 SPACA4Q8TDM5 124 aa10.09□□□□□ -0.79
CTCF-201ENST00000264010 SPRR1BP22528 89 aa10.08□□□□□ -0.8
CTCF-201ENST00000264010 ACYP2P14621 99 aa10.08□□□□□ -0.8
CTCF-201ENST00000264010 H3BPC8 53 aa10.06□□□□□ -0.8
CTCF-201ENST00000264010 COL7A1Q02388 2944 aa10.06□□□□□ -0.8
CTCF-201ENST00000264010 MIR22HGQ0VDD5 57 aa10.06□□□□□ -0.8
CTCF-201ENST00000264010 A8MWP4 228 aa10.06□□□□□ -0.8
CTCF-201ENST00000264010 CIRBP-AS1Q8TBR5 109 aa10.06□□□□□ -0.8
CTCF-201ENST00000264010 PSORS1C2Q9UIG4 136 aa10.05□□□□□ -0.8
CTCF-201ENST00000264010 UQCR11O14957 56 aa10.04□□□□□ -0.8
CTCF-201ENST00000264010 Q6ZRN7 208 aaPredicted RBP10.04□□□□□ -0.8
CTCF-201ENST00000264010 ZNF861PO60384 105 aa10.03□□□□□ -0.8
CTCF-201ENST00000264010 Q75L30 129 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms