RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 GHRHP01286 108 aa12.25□□□□□ -0.45
TNFRSF1A-201ENST00000162749 FAM19A1Q7Z5A9 133 aa12.25□□□□□ -0.45
TNFRSF1A-201ENST00000162749 PRLHP81277 87 aa12.24□□□□□ -0.45
TNFRSF1A-201ENST00000162749 UBL5Q9BZL1 73 aa12.24□□□□□ -0.45
TNFRSF1A-201ENST00000162749 PDE6GP18545 87 aa12.23□□□□□ -0.45
TNFRSF1A-201ENST00000162749 ERC2-IT1O76042 136 aa12.22□□□□□ -0.45
TNFRSF1A-201ENST00000162749 ATP5EP2Q5VTU8 51 aa12.22□□□□□ -0.45
TNFRSF1A-201ENST00000162749 C5orf47Q569G3 176 aa12.2□□□□□ -0.46
TNFRSF1A-201ENST00000162749 LINC01547P58512 204 aaPredicted RBP12.19□□□□□ -0.46
TNFRSF1A-201ENST00000162749 FAM30AQ9NZY2 134 aa12.19□□□□□ -0.46
TNFRSF1A-201ENST00000162749 ST20-AS1Q8NBB2 130 aa12.18□□□□□ -0.46
TNFRSF1A-201ENST00000162749 RPS28P62857 69 aaKnown RBP12.18□□□□□ -0.46
TNFRSF1A-201ENST00000162749 Q6ZVQ6 151 aa12.18□□□□□ -0.46
TNFRSF1A-201ENST00000162749 Q8N377 158 aa12.18□□□□□ -0.46
TNFRSF1A-201ENST00000162749 DEFB105AQ8NG35 78 aa12.18□□□□□ -0.46
TNFRSF1A-201ENST00000162749 H0Y9J4 135 aa12.17□□□□□ -0.46
TNFRSF1A-201ENST00000162749 HIGD2AQ9BW72 106 aa12.17□□□□□ -0.46
TNFRSF1A-201ENST00000162749 BCE1O60756 84 aa12.16□□□□□ -0.46
TNFRSF1A-201ENST00000162749 KRTAP10-1P60331 282 aa12.16□□□□□ -0.46
TNFRSF1A-201ENST00000162749 CYSTM1Q9H1C7 97 aa12.16□□□□□ -0.46
TNFRSF1A-201ENST00000162749 IGLV5-48A0A075B6I7 105 aa12.15□□□□□ -0.46
TNFRSF1A-201ENST00000162749 Q6ZSA8 131 aa12.15□□□□□ -0.46
TNFRSF1A-201ENST00000162749 TMEM258P61165 79 aa12.14□□□□□ -0.47
TNFRSF1A-201ENST00000162749 LINC00336Q6ZUF6 198 aa12.14□□□□□ -0.47
TNFRSF1A-201ENST00000162749 SERP2Q8N6R1 65 aa12.14□□□□□ -0.47
TNFRSF1A-201ENST00000162749 UBE2AP49459 152 aa12.13□□□□□ -0.47
TNFRSF1A-201ENST00000162749 KRTAP13-1Q8IUC0 172 aa12.13□□□□□ -0.47
TNFRSF1A-201ENST00000162749 CIRBP-AS1Q8TBR5 109 aa12.13□□□□□ -0.47
TNFRSF1A-201ENST00000162749 PSORS1C2Q9UIG4 136 aa12.13□□□□□ -0.47
TNFRSF1A-201ENST00000162749 LRP1BQ9NZR2 4599 aa12.11□□□□□ -0.47
TNFRSF1A-201ENST00000162749 HAMPP81172 84 aa12.11□□□□□ -0.47
TNFRSF1A-201ENST00000162749 SCXQ7RTU7 201 aa12.1□□□□□ -0.47
TNFRSF1A-201ENST00000162749 CXCL6P80162 114 aa12.06□□□□□ -0.48
TNFRSF1A-201ENST00000162749 C1orf137Q5JT78 98 aa12.06□□□□□ -0.48
TNFRSF1A-201ENST00000162749 DYNC1H1Q14204 4646 aaKnown RBP12.04□□□□□ -0.48
TNFRSF1A-201ENST00000162749 A0A1B0GVY2 172 aa12.04□□□□□ -0.48
TNFRSF1A-201ENST00000162749 SMIM29Q86T20 159 aa12.04□□□□□ -0.48
TNFRSF1A-201ENST00000162749 RYR3Q15413 4870 aa12.03□□□□□ -0.48
TNFRSF1A-201ENST00000162749 VPS13BQ7Z7G8 4022 aa12.01□□□□□ -0.49
TNFRSF1A-201ENST00000162749 OXTP01178 125 aa12.01□□□□□ -0.49
TNFRSF1A-201ENST00000162749 SPRR1BP22528 89 aa11.98□□□□□ -0.49
TNFRSF1A-201ENST00000162749 ZNF861PO60384 105 aa11.98□□□□□ -0.49
TNFRSF1A-201ENST00000162749 A0A1W2PNM2 257 aa11.97□□□□□ -0.49
TNFRSF1A-201ENST00000162749 IGLV7-43P04211 117 aa11.95□□□□□ -0.5
TNFRSF1A-201ENST00000162749 NREPQ16612 68 aa11.94□□□□□ -0.5
TNFRSF1A-201ENST00000162749 F8WEM9 126 aa11.94□□□□□ -0.5
TNFRSF1A-201ENST00000162749 SPRR4Q96PI1 79 aa11.92□□□□□ -0.5
TNFRSF1A-201ENST00000162749 C4orf26Q17RF5 130 aa11.92□□□□□ -0.5
TNFRSF1A-201ENST00000162749 Q5XG85 94 aa11.92□□□□□ -0.5
TNFRSF1A-201ENST00000162749 APOBP04114 4563 aaKnown RBP11.92□□□□□ -0.5
TNFRSF1A-201ENST00000162749 Q8N9L7 120 aa11.9□□□□□ -0.5
TNFRSF1A-201ENST00000162749 Q8NBF4 154 aa11.9□□□□□ -0.5
TNFRSF1A-201ENST00000162749 IGLV8-61A0A075B6I0 122 aa11.9□□□□□ -0.51
TNFRSF1A-201ENST00000162749 HRCT1Q6UXD1 115 aa11.89□□□□□ -0.51
TNFRSF1A-201ENST00000162749 A0A1B0GW54 56 aa11.88□□□□□ -0.51
TNFRSF1A-201ENST00000162749 LINC00483Q53H64 154 aa11.88□□□□□ -0.51
TNFRSF1A-201ENST00000162749 ZNF706Q9Y5V0 76 aaPredicted RBP11.88□□□□□ -0.51
TNFRSF1A-201ENST00000162749 IGKV4-1P06312 121 aa11.87□□□□□ -0.51
TNFRSF1A-201ENST00000162749 IGFL1Q6UW32 110 aa11.86□□□□□ -0.51
TNFRSF1A-201ENST00000162749 C20orf197Q8N268 126 aa11.86□□□□□ -0.51
TNFRSF1A-201ENST00000162749 A0A0G2JQZ4 141 aa11.86□□□□□ -0.51
TNFRSF1A-201ENST00000162749 BPY2O14599 106 aa11.86□□□□□ -0.51
TNFRSF1A-201ENST00000162749 TRAV7A0A075B6U4 112 aa11.85□□□□□ -0.51
TNFRSF1A-201ENST00000162749 FAM236DA0A1B0GTK5 79 aa11.84□□□□□ -0.51
TNFRSF1A-201ENST00000162749 FAM236CP0DP71 79 aa11.84□□□□□ -0.51
TNFRSF1A-201ENST00000162749 ANAPC11Q9NYG5 84 aa11.81□□□□□ -0.52
TNFRSF1A-201ENST00000162749 FAT1Q14517 4588 aa11.8□□□□□ -0.52
TNFRSF1A-201ENST00000162749 IGLV9-49A0A0B4J1Y8 123 aa11.79□□□□□ -0.52
TNFRSF1A-201ENST00000162749 SERP1Q9Y6X1 66 aa11.77□□□□□ -0.53
TNFRSF1A-201ENST00000162749 H7BZZ5 65 aa11.76□□□□□ -0.53
TNFRSF1A-201ENST00000162749 SMR3BP02814 79 aaPredicted RBP11.74□□□□□ -0.53
TNFRSF1A-201ENST00000162749 DSCR10P59022 87 aa11.74□□□□□ -0.53
TNFRSF1A-201ENST00000162749 KLKP1Q107X0 134 aa11.72□□□□□ -0.53
TNFRSF1A-201ENST00000162749 RPL37AP61513 92 aaKnown RBP11.71□□□□□ -0.53
TNFRSF1A-201ENST00000162749 MOBPQ13875 183 aa11.71□□□□□ -0.53
TNFRSF1A-201ENST00000162749 A0A087WSZ3 146 aa11.68□□□□□ -0.54
TNFRSF1A-201ENST00000162749 OCR1Q9BZK8 76 aa11.68□□□□□ -0.54
TNFRSF1A-201ENST00000162749 SNURFQ9Y675 71 aa11.68□□□□□ -0.54
TNFRSF1A-201ENST00000162749 K7EQZ3 153 aa11.67□□□□□ -0.54
TNFRSF1A-201ENST00000162749 KRTAP1-4P0C5Y4 121 aa11.65□□□□□ -0.54
TNFRSF1A-201ENST00000162749 A0A087X002 238 aa11.64□□□□□ -0.55
TNFRSF1A-201ENST00000162749 DEFB116Q30KQ4 102 aa11.64□□□□□ -0.55
TNFRSF1A-201ENST00000162749 PRO0628Q9UI54 55 aa11.63□□□□□ -0.55
TNFRSF1A-201ENST00000162749 HSPG2P98160 4391 aa11.63□□□□□ -0.55
TNFRSF1A-201ENST00000162749 KRTAP10-4P60372 401 aaPredicted RBP11.62□□□□□ -0.55
TNFRSF1A-201ENST00000162749 SMIM26A0A096LP01 95 aa11.62□□□□□ -0.55
TNFRSF1A-201ENST00000162749 FAM229BQ4G0N7 80 aa11.61□□□□□ -0.55
TNFRSF1A-201ENST00000162749 SPINK6Q6UWN8 80 aa11.61□□□□□ -0.55
TNFRSF1A-201ENST00000162749 TMEM254Q8TBM7 123 aa11.6□□□□□ -0.55
TNFRSF1A-201ENST00000162749 NDUFC1O43677 76 aa11.59□□□□□ -0.55
TNFRSF1A-201ENST00000162749 KRTAP13-2Q52LG2 175 aa11.59□□□□□ -0.55
TNFRSF1A-201ENST00000162749 EPPK1P58107 5090 aaKnown RBP11.59□□□□□ -0.55
TNFRSF1A-201ENST00000162749 FP248Q71RG6 208 aaPredicted RBP11.59□□□□□ -0.55
TNFRSF1A-201ENST00000162749 RYR1P21817 5038 aa11.57□□□□□ -0.56
TNFRSF1A-201ENST00000162749 ATP5EP56381 51 aaPredicted RBP11.56□□□□□ -0.56
TNFRSF1A-201ENST00000162749 SSBP3-AS1Q7Z2R9 100 aa11.56□□□□□ -0.56
TNFRSF1A-201ENST00000162749 PLA2G1BP04054 148 aaKnown RBP11.55□□□□□ -0.56
TNFRSF1A-201ENST00000162749 A0A0U1RQV1 116 aa11.54□□□□□ -0.56
TNFRSF1A-201ENST00000162749 HCG22E2RYF7 251 aa11.54□□□□□ -0.56
TNFRSF1A-201ENST00000162749 CDK2AP2O75956 126 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms