RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CCL26Q9Y258 94 aa2.34□□□□□ -2.03
SCN1A-221ENST00000641996 IGLV1-50A0A075B6I6 118 aa2.34□□□□□ -2.03
SCN1A-221ENST00000641996 H3BRN7 92 aa2.34□□□□□ -2.03
SCN1A-221ENST00000641996 COL4A1P02462 1669 aa2.34□□□□□ -2.03
SCN1A-221ENST00000641996 EGFEM1PQ0D2K5 195 aa2.34□□□□□ -2.04
SCN1A-221ENST00000641996 IGLV1-47P01700 117 aa2.34□□□□□ -2.04
SCN1A-221ENST00000641996 LINC01546A6NGU7 62 aa2.34□□□□□ -2.04
SCN1A-221ENST00000641996 C1orf137Q5JT78 98 aa2.34□□□□□ -2.04
SCN1A-221ENST00000641996 PKD1L1Q8TDX9 2849 aa2.34□□□□□ -2.04
SCN1A-221ENST00000641996 A8MTW9 85 aa2.33□□□□□ -2.04
SCN1A-221ENST00000641996 CXorf51AA0A1B0GTR3 108 aa2.33□□□□□ -2.04
SCN1A-221ENST00000641996 SSC5DA1L4H1 1573 aa2.33□□□□□ -2.04
SCN1A-221ENST00000641996 IGLV1-44P01699 117 aa2.33□□□□□ -2.04
SCN1A-221ENST00000641996 DEFB1P60022 68 aa2.33□□□□□ -2.04
SCN1A-221ENST00000641996 SPANXA2-OT1Q8N9U9 137 aa2.32□□□□□ -2.04
SCN1A-221ENST00000641996 FAM104AQ969W3 186 aa2.32□□□□□ -2.04
SCN1A-221ENST00000641996 PRO3102Q9H379 93 aa2.32□□□□□ -2.04
SCN1A-221ENST00000641996 WT1-ASQ06250 92 aa2.32□□□□□ -2.04
SCN1A-221ENST00000641996 IGLV2-18A0A075B6J9 118 aa2.32□□□□□ -2.04
SCN1A-221ENST00000641996 CCL14Q16627 93 aa2.32□□□□□ -2.04
SCN1A-221ENST00000641996 SRCAPQ6ZRS2 3230 aa2.31□□□□□ -2.04
SCN1A-221ENST00000641996 NBEAQ8NFP9 2946 aa2.31□□□□□ -2.04
SCN1A-221ENST00000641996 HTN3P15516 51 aa2.31□□□□□ -2.04
SCN1A-221ENST00000641996 HMGA1P17096 107 aaKnown RBP2.31□□□□□ -2.04
SCN1A-221ENST00000641996 AMELXQ99217 191 aa2.31□□□□□ -2.04
SCN1A-221ENST00000641996 TMEM167AQ8TBQ9 72 aa2.31□□□□□ -2.04
SCN1A-221ENST00000641996 OBSCN-AS1Q96MR7 158 aa2.31□□□□□ -2.04
SCN1A-221ENST00000641996 DEFB133Q30KQ1 61 aa2.3□□□□□ -2.04
SCN1A-221ENST00000641996 SPINK13Q1W4C9 94 aa2.3□□□□□ -2.04
SCN1A-221ENST00000641996 NOTCH2NLQ7Z3S9 236 aa2.3□□□□□ -2.04
SCN1A-221ENST00000641996 DCHS2Q6V1P9 2916 aa2.3□□□□□ -2.04
SCN1A-221ENST00000641996 ZANQ9Y493 2812 aa2.3□□□□□ -2.04
SCN1A-221ENST00000641996 ODF3BA8MYP8 253 aa2.3□□□□□ -2.04
SCN1A-221ENST00000641996 UBE2DNLQ8IWF7 75 aa2.29□□□□□ -2.04
SCN1A-221ENST00000641996 RNF5Q99942 180 aa2.29□□□□□ -2.04
SCN1A-221ENST00000641996 ZNF575Q86XF7 245 aa2.29□□□□□ -2.04
SCN1A-221ENST00000641996 MEGF8Q7Z7M0 2845 aa2.29□□□□□ -2.04
SCN1A-221ENST00000641996 HRNRQ86YZ3 2850 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-221ENST00000641996 KPRPQ5T749 579 aaPredicted RBP2.29□□□□□ -2.04
SCN1A-221ENST00000641996 APLNQ9ULZ1 77 aa2.29□□□□□ -2.04
SCN1A-221ENST00000641996 DMXL2Q8TDJ6 3036 aa2.29□□□□□ -2.04
SCN1A-221ENST00000641996 Q8NDZ9 215 aa2.29□□□□□ -2.04
SCN1A-221ENST00000641996 P0C879 139 aa2.28□□□□□ -2.04
SCN1A-221ENST00000641996 COX6A2Q02221 97 aa2.28□□□□□ -2.04
SCN1A-221ENST00000641996 Q6ZSN1 163 aa2.28□□□□□ -2.04
SCN1A-221ENST00000641996 IGLV3-1P01715 115 aa2.28□□□□□ -2.04
SCN1A-221ENST00000641996 CCL19Q99731 98 aa2.28□□□□□ -2.04
SCN1A-221ENST00000641996 C4orf3Q8WVX3 66 aa2.28□□□□□ -2.04
SCN1A-221ENST00000641996 Q8IZM0 81 aa2.27□□□□□ -2.05
SCN1A-221ENST00000641996 LPAL2Q16609 132 aa2.27□□□□□ -2.05
SCN1A-221ENST00000641996 DEFB136Q30KP8 78 aa2.27□□□□□ -2.05
SCN1A-221ENST00000641996 IGKV2-28A0A075B6P5 120 aa2.27□□□□□ -2.05
SCN1A-221ENST00000641996 K7EQZ3 153 aa2.27□□□□□ -2.05
SCN1A-221ENST00000641996 IGKV2D-28P01615 120 aa2.27□□□□□ -2.05
SCN1A-221ENST00000641996 LITAFQ99732 161 aa2.27□□□□□ -2.05
SCN1A-221ENST00000641996 A0A096LPF7 62 aa2.27□□□□□ -2.05
SCN1A-221ENST00000641996 LY6EQ16553 131 aa2.27□□□□□ -2.05
SCN1A-221ENST00000641996 COL4A6Q14031 1691 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 M0QY20 66 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 A0A0D9SG42 100 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 PRR9Q5T870 116 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 COL4A3Q01955 1670 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 CLPSP04118 112 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 P0C880 135 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 PROK1P58294 105 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 A0A096LNI7 61 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 C9orf163Q8N9P6 203 aa2.26□□□□□ -2.05
SCN1A-221ENST00000641996 A0A1W2PNN7 141 aa2.25□□□□□ -2.05
SCN1A-221ENST00000641996 ANGP03950 147 aaKnown RBP2.25□□□□□ -2.05
SCN1A-221ENST00000641996 SPINK14Q6IE38 97 aa2.25□□□□□ -2.05
SCN1A-221ENST00000641996 C15orf56Q8N910 161 aa2.25□□□□□ -2.05
SCN1A-221ENST00000641996 CNBPP62633 177 aaKnown RBP2.25□□□□□ -2.05
SCN1A-221ENST00000641996 CNFNQ9BYD5 112 aa2.25□□□□□ -2.05
SCN1A-221ENST00000641996 TENM4Q6N022 2769 aa2.25□□□□□ -2.05
SCN1A-221ENST00000641996 LY6G6CO95867 125 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 Q8N377 158 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 R4GN34 69 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 TENM2Q9NT68 2774 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 LINC00315P59091 139 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 M0R2N4 97 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 POLR2KP53803 58 aaKnown RBP2.24□□□□□ -2.05
SCN1A-221ENST00000641996 RTL8CO15255 209 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 K7EIM0 57 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 DEFB130BP0DP73 79 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 DEFB130AP0DP74 79 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 COX14Q96I36 57 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 IGKV2D-30A0A075B6S6 120 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 IGKV2-30P06310 120 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 HRES1P13985 223 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 TP53AIP1Q9HCN2 124 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 A0A0G2JQZ4 141 aa2.24□□□□□ -2.05
SCN1A-221ENST00000641996 Q6ZRX8 168 aa2.23□□□□□ -2.05
SCN1A-221ENST00000641996 SPINK6Q6UWN8 80 aa2.23□□□□□ -2.05
SCN1A-221ENST00000641996 A0A087WSZ3 146 aa2.23□□□□□ -2.05
SCN1A-221ENST00000641996 I3L2K1 104 aa2.23□□□□□ -2.05
SCN1A-221ENST00000641996 RHPN1-AS1Q9BWJ2 59 aa2.23□□□□□ -2.05
SCN1A-221ENST00000641996 IGKV2D-24A0A075B6R9 120 aa2.23□□□□□ -2.05
SCN1A-221ENST00000641996 NOP10Q9NPE3 64 aaKnown RBP2.23□□□□□ -2.05
SCN1A-221ENST00000641996 Q9Y3F1 56 aa2.23□□□□□ -2.05
SCN1A-221ENST00000641996 C5orf42Q9H799 3197 aa2.22□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms