RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TNP2Q05952 138 aa1.99□□□□□ -2.09
SCN1A-219ENST00000641575 FAM19A4Q96LR4 140 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 M0QY20 66 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 NBDYA0A0U1RRE5 68 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 K7EQG2 157 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 LINC00304Q8N9R0 145 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 USP34Q70CQ2 3546 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 LOC101927531A0A1B0GV80 90 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 UQCR11O14957 56 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 CDC42SE1Q9NRR8 79 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 FLVCR1-AS1Q8TAF5 88 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 Q6ZS46 218 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 LINC00574Q9H8X3 128 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 Q96NJ1 140 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 CNFNQ9BYD5 112 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 ZNF575Q86XF7 245 aa1.98□□□□□ -2.09
SCN1A-219ENST00000641575 BBC3Q96PG8 261 aaPredicted RBP1.98□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV1-47P01700 117 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV5-39A0A0G2JS06 123 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 Q6ZTI0 123 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 NDUFAF8A1L188 74 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 ZNF295-AS1Q8N0V1 137 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 C5orf42Q9H799 3197 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 RSPO1Q2MKA7 263 aaPredicted RBP1.97□□□□□ -2.09
SCN1A-219ENST00000641575 GRNP28799 593 aaKnown RBP1.97□□□□□ -2.09
SCN1A-219ENST00000641575 ADGRG4Q8IZF6 3080 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 COL7A1Q02388 2944 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 TP53TG3Q9ULZ0 132 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 SMIM29Q86T20 159 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 DEFB1P60022 68 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 MOBPQ13875 183 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 PLA2G2DQ9UNK4 145 aa1.97□□□□□ -2.09
SCN1A-219ENST00000641575 IGLV1-50A0A075B6I6 118 aa1.96□□□□□ -2.09
SCN1A-219ENST00000641575 LINC00959A0A1B0GUT2 108 aa1.96□□□□□ -2.09
SCN1A-219ENST00000641575 BRI3O95415 125 aa1.96□□□□□ -2.1
SCN1A-219ENST00000641575 LMO4P61968 165 aa1.96□□□□□ -2.1
SCN1A-219ENST00000641575 COX6A2Q02221 97 aa1.96□□□□□ -2.1
SCN1A-219ENST00000641575 TRIOO75962 3097 aa1.96□□□□□ -2.1
SCN1A-219ENST00000641575 MIR22HGQ0VDD5 57 aa1.96□□□□□ -2.1
SCN1A-219ENST00000641575 LINC00528Q8N1L1 170 aa1.96□□□□□ -2.1
SCN1A-219ENST00000641575 C9orf116Q5BN46 136 aaPredicted RBP1.96□□□□□ -2.1
SCN1A-219ENST00000641575 MEGF8Q7Z7M0 2845 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 CEP350Q5VT06 3117 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 H7BZZ5 65 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 ZZEF1O43149 2961 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 DEFB116Q30KQ4 102 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 C11orf1Q9H5F2 150 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 LINC00588Q9Y4M8 146 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 LINC01600Q96MT4 127 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 K7EQZ3 153 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 FRYQ5TBA9 3013 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 COL4A3Q01955 1670 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 COA5Q86WW8 74 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 LAMA1P25391 3075 aa1.95□□□□□ -2.1
SCN1A-219ENST00000641575 PROK1P58294 105 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 UNQ9165/PRO28630Q6UXU0 137 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 TM2D3Q9BRN9 247 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 KRTAP27-1Q3LI81 207 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 ADAMTSL4-AS1Q5T5F5 129 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 APLNQ9ULZ1 77 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 TSPEAR-AS2P59090 65 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 LOC110117498A0A087WWA1 95 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 LITAFQ99732 161 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 OTOGQ6ZRI0 2925 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 A0A087WSZ3 146 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 WIPF1O43516 503 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 Q6ZPA2 131 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 C22orf24Q9Y442 160 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 WDFY3Q8IZQ1 3526 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 DNAH14Q0VDD8 3507 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 CDSNQ15517 529 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 ASB16-AS1Q495Z4 193 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 AMELXQ99217 191 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 CRIP1P50238 77 aa1.94□□□□□ -2.1
SCN1A-219ENST00000641575 Q1T7F1 81 aa1.93□□□□□ -2.1
SCN1A-219ENST00000641575 SMCR5Q8TEV8 140 aa1.93□□□□□ -2.1
SCN1A-219ENST00000641575 GOLGB1Q14789 3259 aaKnown RBP1.93□□□□□ -2.1
SCN1A-219ENST00000641575 IGIPA6NJ69 53 aa1.93□□□□□ -2.1
SCN1A-219ENST00000641575 PRR3P79522 188 aaKnown RBP1.93□□□□□ -2.1
SCN1A-219ENST00000641575 C11orf72Q8NBR9 251 aa1.93□□□□□ -2.1
SCN1A-219ENST00000641575 COX8CQ7Z4L0 72 aa1.93□□□□□ -2.1
SCN1A-219ENST00000641575 DMAC1Q96GE9 116 aa1.93□□□□□ -2.1
SCN1A-219ENST00000641575 CHTF8P0CG12 524 aa1.93□□□□□ -2.1
SCN1A-219ENST00000641575 Q6ZQT0 140 aa1.93□□□□□ -2.1
SCN1A-219ENST00000641575 CDC42SE2Q9NRR3 84 aa1.93□□□□□ -2.1
SCN1A-219ENST00000641575 ZNF861PO60384 105 aa1.92□□□□□ -2.1
SCN1A-219ENST00000641575 CFAP54Q96N23 3096 aa1.92□□□□□ -2.1
SCN1A-219ENST00000641575 LINC00310P59036 64 aa1.92□□□□□ -2.1
SCN1A-219ENST00000641575 LINC00242Q5T6M2 205 aa1.92□□□□□ -2.1
SCN1A-219ENST00000641575 C9orf129Q5T035 196 aaKnown RBP1.92□□□□□ -2.1
SCN1A-219ENST00000641575 CSAG1Q6PB30 78 aa1.92□□□□□ -2.1
SCN1A-219ENST00000641575 MRPL34Q9BQ48 92 aaKnown RBP1.92□□□□□ -2.1
SCN1A-219ENST00000641575 DMXL1Q9Y485 3027 aa1.92□□□□□ -2.1
SCN1A-219ENST00000641575 POLR2KP53803 58 aaKnown RBP1.92□□□□□ -2.1
SCN1A-219ENST00000641575 UNQ6190/PRO20217Q6UXQ8 127 aa1.91□□□□□ -2.1
SCN1A-219ENST00000641575 LINC00315P59091 139 aa1.91□□□□□ -2.1
SCN1A-219ENST00000641575 SPANXA2-OT1Q8N9U9 137 aa1.91□□□□□ -2.1
SCN1A-219ENST00000641575 PRO3102Q9H379 93 aa1.91□□□□□ -2.1
SCN1A-219ENST00000641575 PRR9Q5T870 116 aa1.91□□□□□ -2.1
SCN1A-219ENST00000641575 MYO15AQ9UKN7 3530 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms