RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CLEC2BQ92478 149 aa11.66□□□□□ -0.54
CLN3-254ENST00000637050 LINC00167Q96N53 147 aa11.66□□□□□ -0.54
CLN3-254ENST00000637050 M0QXV9 152 aa11.65□□□□□ -0.54
CLN3-254ENST00000637050 C6orf99Q4VX62 202 aa11.65□□□□□ -0.54
CLN3-254ENST00000637050 LINC00336Q6ZUF6 198 aa11.65□□□□□ -0.54
CLN3-254ENST00000637050 IGLV1-50A0A075B6I6 118 aa11.65□□□□□ -0.55
CLN3-254ENST00000637050 B5MCH6 92 aa11.65□□□□□ -0.55
CLN3-254ENST00000637050 H0YGX0 51 aa11.65□□□□□ -0.55
CLN3-254ENST00000637050 MT-ATP8P03928 68 aa11.65□□□□□ -0.55
CLN3-254ENST00000637050 KCNQ1DNQ9H478 68 aa11.65□□□□□ -0.55
CLN3-254ENST00000637050 ATXN8Q156A1 80 aa11.64□□□□□ -0.55
CLN3-254ENST00000637050 Q6Q795 121 aa11.64□□□□□ -0.55
CLN3-254ENST00000637050 EPM2AB3EWF7 344 aa11.63□□□□□ -0.55
CLN3-254ENST00000637050 LST1O00453 97 aa11.63□□□□□ -0.55
CLN3-254ENST00000637050 ZNF73O43830 326 aaPredicted RBP11.63□□□□□ -0.55
CLN3-254ENST00000637050 RPL37AP8A6NKH3 93 aa11.62□□□□□ -0.55
CLN3-254ENST00000637050 XGP55808 180 aa11.62□□□□□ -0.55
CLN3-254ENST00000637050 DIRC1Q969H9 104 aa11.62□□□□□ -0.55
CLN3-254ENST00000637050 FAM218AQ96MZ4 157 aa11.62□□□□□ -0.55
CLN3-254ENST00000637050 TEN1Q86WV5 123 aa11.61□□□□□ -0.55
CLN3-254ENST00000637050 SMIM20Q8N5G0 67 aa11.61□□□□□ -0.55
CLN3-254ENST00000637050 DPH3Q96FX2 82 aa11.61□□□□□ -0.55
CLN3-254ENST00000637050 TRBV7-6A0A0J9YX20 115 aa11.59□□□□□ -0.55
CLN3-254ENST00000637050 PRYO14603 147 aa11.59□□□□□ -0.55
CLN3-254ENST00000637050 A0A087WYN8 130 aa11.59□□□□□ -0.55
CLN3-254ENST00000637050 HECTD4Q9Y4D8 3996 aa11.59□□□□□ -0.55
CLN3-254ENST00000637050 SNCGO76070 127 aa11.58□□□□□ -0.56
CLN3-254ENST00000637050 NDUFV3P56181 108 aaKnown RBP11.58□□□□□ -0.56
CLN3-254ENST00000637050 PHF5AQ7RTV0 110 aaKnown RBP11.58□□□□□ -0.56
CLN3-254ENST00000637050 TRACP01848 142 aa11.57□□□□□ -0.56
CLN3-254ENST00000637050 SPRR1AP35321 89 aa11.57□□□□□ -0.56
CLN3-254ENST00000637050 FAT2Q9NYQ8 4349 aa11.57□□□□□ -0.56
CLN3-254ENST00000637050 ELOF1P60002 83 aaKnown RBP11.56□□□□□ -0.56
CLN3-254ENST00000637050 PLAC8Q9NZF1 115 aa11.56□□□□□ -0.56
CLN3-254ENST00000637050 KRTAP4-16G5E9R7 235 aaPredicted RBP11.55□□□□□ -0.56
CLN3-254ENST00000637050 COX7BP24311 80 aa11.55□□□□□ -0.56
CLN3-254ENST00000637050 LINC00575Q6W349 94 aa11.55□□□□□ -0.56
CLN3-254ENST00000637050 RYR2Q92736 4967 aa11.54□□□□□ -0.56
CLN3-254ENST00000637050 A0A1B0GX51 115 aa11.54□□□□□ -0.56
CLN3-254ENST00000637050 DNAH11Q96DT5 4516 aa11.54□□□□□ -0.56
CLN3-254ENST00000637050 A0A1B0GVY2 172 aa11.53□□□□□ -0.56
CLN3-254ENST00000637050 C9JAW5 83 aa11.53□□□□□ -0.56
CLN3-254ENST00000637050 KRTAP10-1P60331 282 aa11.53□□□□□ -0.56
CLN3-254ENST00000637050 REG3GQ6UW15 175 aa11.53□□□□□ -0.56
CLN3-254ENST00000637050 C5orf47Q569G3 176 aa11.52□□□□□ -0.56
CLN3-254ENST00000637050 KRTAP11-1Q8IUC1 163 aa11.52□□□□□ -0.56
CLN3-254ENST00000637050 LINC00528Q8N1L1 170 aa11.52□□□□□ -0.56
CLN3-254ENST00000637050 KMT2CQ8NEZ4 4911 aaKnown RBP11.52□□□□□ -0.56
CLN3-254ENST00000637050 UBE2BP63146 152 aa11.52□□□□□ -0.57
CLN3-254ENST00000637050 Q6ZSA8 131 aa11.52□□□□□ -0.57
CLN3-254ENST00000637050 FAM30AQ9NZY2 134 aa11.52□□□□□ -0.57
CLN3-254ENST00000637050 SMCPP49901 116 aaPredicted RBP11.5□□□□□ -0.57
CLN3-254ENST00000637050 PKD1P98161 4303 aa11.5□□□□□ -0.57
CLN3-254ENST00000637050 SLC25A20O43772 301 aa11.49□□□□□ -0.57
CLN3-254ENST00000637050 ETDCA0A1B0GVM5 59 aa11.49□□□□□ -0.57
CLN3-254ENST00000637050 hADV29S1A0JD25 119 aa11.49□□□□□ -0.57
CLN3-254ENST00000637050 Q6ZRX8 168 aa11.49□□□□□ -0.57
CLN3-254ENST00000637050 DNAL4O96015 105 aa11.48□□□□□ -0.57
CLN3-254ENST00000637050 LINC01600Q96MT4 127 aa11.47□□□□□ -0.57
CLN3-254ENST00000637050 INAFM2P0DMQ5 153 aa11.46□□□□□ -0.57
CLN3-254ENST00000637050 H3BT86 120 aa11.46□□□□□ -0.58
CLN3-254ENST00000637050 ANKRD29Q8N6D5 301 aa11.46□□□□□ -0.58
CLN3-254ENST00000637050 CIRBP-AS1Q8TBR5 109 aa11.46□□□□□ -0.58
CLN3-254ENST00000637050 DNAH5Q8TE73 4624 aa11.44□□□□□ -0.58
CLN3-254ENST00000637050 CCDC179H3BU77 68 aa11.44□□□□□ -0.58
CLN3-254ENST00000637050 SCXQ7RTU7 201 aa11.43□□□□□ -0.58
CLN3-254ENST00000637050 Q9BRP9 147 aa11.43□□□□□ -0.58
CLN3-254ENST00000637050 BAALC-AS2P0C853 105 aa11.43□□□□□ -0.58
CLN3-254ENST00000637050 DHRS4-AS1Q9P1J3 65 aa11.43□□□□□ -0.58
CLN3-254ENST00000637050 FAM19A1Q7Z5A9 133 aa11.42□□□□□ -0.58
CLN3-254ENST00000637050 ORMDL1Q9P0S3 153 aa11.42□□□□□ -0.58
CLN3-254ENST00000637050 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.41□□□□□ -0.58
CLN3-254ENST00000637050 Q6ZQY7 126 aa11.4□□□□□ -0.58
CLN3-254ENST00000637050 H0Y9J4 135 aa11.4□□□□□ -0.59
CLN3-254ENST00000637050 BCE1O60756 84 aa11.4□□□□□ -0.59
CLN3-254ENST00000637050 PRLHP81277 87 aa11.39□□□□□ -0.59
CLN3-254ENST00000637050 SMCR5Q8TEV8 140 aa11.38□□□□□ -0.59
CLN3-254ENST00000637050 PSORS1C2Q9UIG4 136 aa11.38□□□□□ -0.59
CLN3-254ENST00000637050 HAMPP81172 84 aa11.36□□□□□ -0.59
CLN3-254ENST00000637050 KRTAP13-1Q8IUC0 172 aa11.36□□□□□ -0.59
CLN3-254ENST00000637050 FAM240AA0A1B0GVK7 77 aa11.35□□□□□ -0.59
CLN3-254ENST00000637050 J3KT08 172 aa11.35□□□□□ -0.59
CLN3-254ENST00000637050 TMEM256-PLSCR3K7ERE1 68 aa11.35□□□□□ -0.59
CLN3-254ENST00000637050 ERC2-IT1O76042 136 aa11.35□□□□□ -0.59
CLN3-254ENST00000637050 H3BQ85 93 aa11.34□□□□□ -0.59
CLN3-254ENST00000637050 UBE2AP49459 152 aa11.34□□□□□ -0.59
CLN3-254ENST00000637050 IMUPQ9GZP8 106 aa11.33□□□□□ -0.6
CLN3-254ENST00000637050 DNAH8Q96JB1 4490 aa11.33□□□□□ -0.6
CLN3-254ENST00000637050 GHRHP01286 108 aa11.33□□□□□ -0.6
CLN3-254ENST00000637050 HIGD2AQ9BW72 106 aa11.32□□□□□ -0.6
CLN3-254ENST00000637050 C1orf137Q5JT78 98 aa11.31□□□□□ -0.6
CLN3-254ENST00000637050 TRBV7-7A0A0K0K1E9 115 aa11.3□□□□□ -0.6
CLN3-254ENST00000637050 RPS28P62857 69 aaKnown RBP11.3□□□□□ -0.6
CLN3-254ENST00000637050 LINC01547P58512 204 aaPredicted RBP11.3□□□□□ -0.6
CLN3-254ENST00000637050 ST20-AS1Q8NBB2 130 aa11.3□□□□□ -0.6
CLN3-254ENST00000637050 RYR3Q15413 4870 aa11.29□□□□□ -0.6
CLN3-254ENST00000637050 IGLV5-48A0A075B6I7 105 aa11.29□□□□□ -0.6
CLN3-254ENST00000637050 PKHD1P08F94 4074 aa11.28□□□□□ -0.6
CLN3-254ENST00000637050 TEX49A0A1B0GTD5 131 aa11.28□□□□□ -0.6
CLN3-254ENST00000637050 Q8N377 158 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms