RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 PKD1L2Q7Z442 2459 aa3.7□□□□□ -1.82
SCN1A-209ENST00000635750 A0A087WTM6 91 aa3.7□□□□□ -1.82
SCN1A-209ENST00000635750 FAM218AQ96MZ4 157 aa3.7□□□□□ -1.82
SCN1A-209ENST00000635750 A0A096LNJ9 63 aa3.69□□□□□ -1.82
SCN1A-209ENST00000635750 IGLV7-43P04211 117 aa3.69□□□□□ -1.82
SCN1A-209ENST00000635750 KCNQ1DNQ9H478 68 aa3.69□□□□□ -1.82
SCN1A-209ENST00000635750 IGFL1Q6UW32 110 aa3.69□□□□□ -1.82
SCN1A-209ENST00000635750 LINC00528Q8N1L1 170 aa3.69□□□□□ -1.82
SCN1A-209ENST00000635750 FAM104AQ969W3 186 aa3.68□□□□□ -1.82
SCN1A-209ENST00000635750 K7EIL1 84 aa3.68□□□□□ -1.82
SCN1A-209ENST00000635750 LINC00310P59036 64 aa3.68□□□□□ -1.82
SCN1A-209ENST00000635750 A8MUN3 132 aa3.67□□□□□ -1.82
SCN1A-209ENST00000635750 NCOR2Q9Y618 2525 aa3.67□□□□□ -1.82
SCN1A-209ENST00000635750 SETD2Q9BYW2 2564 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-209ENST00000635750 PSORS1C2Q9UIG4 136 aa3.66□□□□□ -1.82
SCN1A-209ENST00000635750 IGLV7-46A0A075B6I9 117 aa3.66□□□□□ -1.82
SCN1A-209ENST00000635750 PLA2G2DQ9UNK4 145 aa3.66□□□□□ -1.82
SCN1A-209ENST00000635750 Q8N1X5 172 aa3.65□□□□□ -1.83
SCN1A-209ENST00000635750 KRTAP10-11P60412 298 aa3.65□□□□□ -1.83
SCN1A-209ENST00000635750 C15orf56Q8N910 161 aa3.64□□□□□ -1.83
SCN1A-209ENST00000635750 TLX1NBP0CAT3 122 aa3.64□□□□□ -1.83
SCN1A-209ENST00000635750 Q1T7F1 81 aa3.64□□□□□ -1.83
SCN1A-209ENST00000635750 KTN1-AS1Q86SY8 53 aa3.64□□□□□ -1.83
SCN1A-209ENST00000635750 CD164Q04900 197 aa3.63□□□□□ -1.83
SCN1A-209ENST00000635750 LCA10Q71F78 164 aa3.63□□□□□ -1.83
SCN1A-209ENST00000635750 ANAPC11Q9NYG5 84 aa3.63□□□□□ -1.83
SCN1A-209ENST00000635750 SPRR4Q96PI1 79 aa3.63□□□□□ -1.83
SCN1A-209ENST00000635750 C19orf73Q9NVV2 129 aa3.63□□□□□ -1.83
SCN1A-209ENST00000635750 ANKRD11Q6UB99 2663 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-209ENST00000635750 Q8N377 158 aa3.62□□□□□ -1.83
SCN1A-209ENST00000635750 MTORP42345 2549 aa3.62□□□□□ -1.83
SCN1A-209ENST00000635750 PRR26Q8N8Z3 221 aa3.61□□□□□ -1.83
SCN1A-209ENST00000635750 SPANXA2-OT1Q8N9U9 137 aa3.61□□□□□ -1.83
SCN1A-209ENST00000635750 S4R3F8 94 aa3.61□□□□□ -1.83
SCN1A-209ENST00000635750 CHD8Q9HCK8 2581 aa3.61□□□□□ -1.83
SCN1A-209ENST00000635750 C10orf142B7Z368 130 aa3.61□□□□□ -1.83
SCN1A-209ENST00000635750 SMCPP49901 116 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-209ENST00000635750 CSAG1Q6PB30 78 aa3.6□□□□□ -1.83
SCN1A-209ENST00000635750 PRR34Q9NV39 138 aa3.6□□□□□ -1.83
SCN1A-209ENST00000635750 CNBPP62633 177 aaKnown RBP3.6□□□□□ -1.83
SCN1A-209ENST00000635750 SPTBN4Q9H254 2564 aa3.59□□□□□ -1.83
SCN1A-209ENST00000635750 POLQO75417 2590 aa3.59□□□□□ -1.83
SCN1A-209ENST00000635750 A0A0A0MQY5 61 aa3.59□□□□□ -1.83
SCN1A-209ENST00000635750 USP24Q9UPU5 2620 aa3.59□□□□□ -1.83
SCN1A-209ENST00000635750 A0A1B0GU33 70 aa3.59□□□□□ -1.83
SCN1A-209ENST00000635750 LINC00612Q8N6U2 182 aa3.59□□□□□ -1.84
SCN1A-209ENST00000635750 SEC61BP60468 96 aaKnown RBP3.59□□□□□ -1.84
SCN1A-209ENST00000635750 A0A1W2PNN7 141 aa3.58□□□□□ -1.84
SCN1A-209ENST00000635750 KLKP1Q107X0 134 aa3.58□□□□□ -1.84
SCN1A-209ENST00000635750 BPTFQ12830 3046 aa3.58□□□□□ -1.84
SCN1A-209ENST00000635750 PLAC4Q8WY50 150 aa3.58□□□□□ -1.84
SCN1A-209ENST00000635750 DMAC1Q96GE9 116 aa3.57□□□□□ -1.84
SCN1A-209ENST00000635750 PRO0461Q9UI25 63 aa3.57□□□□□ -1.84
SCN1A-209ENST00000635750 FASNP49327 2511 aaKnown RBP3.56□□□□□ -1.84
SCN1A-209ENST00000635750 R4GN34 69 aa3.56□□□□□ -1.84
SCN1A-209ENST00000635750 USP9YO00507 2555 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-209ENST00000635750 A0A0G2JQZ4 141 aa3.55□□□□□ -1.84
SCN1A-209ENST00000635750 CASC10Q5T4H9 136 aa3.55□□□□□ -1.84
SCN1A-209ENST00000635750 FAM229BQ4G0N7 80 aa3.55□□□□□ -1.84
SCN1A-209ENST00000635750 LITAFQ99732 161 aa3.55□□□□□ -1.84
SCN1A-209ENST00000635750 H7BZZ5 65 aa3.54□□□□□ -1.84
SCN1A-209ENST00000635750 TNP2Q05952 138 aa3.53□□□□□ -1.84
SCN1A-209ENST00000635750 H1FX-AS1Q4G0G2 97 aa3.52□□□□□ -1.85
SCN1A-209ENST00000635750 ZCCHC13Q8WW36 166 aaKnown RBP3.52□□□□□ -1.85
SCN1A-209ENST00000635750 H3BS24 57 aa3.51□□□□□ -1.85
SCN1A-209ENST00000635750 KLK9Q2XQG4 91 aa3.51□□□□□ -1.85
SCN1A-209ENST00000635750 KRTAP10-3P60369 221 aa3.51□□□□□ -1.85
SCN1A-209ENST00000635750 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-209ENST00000635750 SPINK7P58062 85 aa3.51□□□□□ -1.85
SCN1A-209ENST00000635750 GIG44P09565 113 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-209ENST00000635750 A0A1W2PNM2 257 aa3.49□□□□□ -1.85
SCN1A-209ENST00000635750 OXTP01178 125 aa3.49□□□□□ -1.85
SCN1A-209ENST00000635750 EPG5Q9HCE0 2579 aa3.48□□□□□ -1.85
SCN1A-209ENST00000635750 Q5VSD8 79 aa3.48□□□□□ -1.85
SCN1A-209ENST00000635750 WIPF1O43516 503 aa3.46□□□□□ -1.86
SCN1A-209ENST00000635750 Q75L30 129 aa3.46□□□□□ -1.86
SCN1A-209ENST00000635750 M0QZ58 72 aa3.45□□□□□ -1.86
SCN1A-209ENST00000635750 PLAC8Q9NZF1 115 aa3.45□□□□□ -1.86
SCN1A-209ENST00000635750 ROMO1P60602 79 aa3.43□□□□□ -1.86
SCN1A-209ENST00000635750 OCR1Q9BZK8 76 aa3.43□□□□□ -1.86
SCN1A-209ENST00000635750 A0A096LNT2 108 aa3.43□□□□□ -1.86
SCN1A-209ENST00000635750 RPL37P61927 97 aaKnown RBP3.43□□□□□ -1.86
SCN1A-209ENST00000635750 Q8N9P0 234 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-209ENST00000635750 EIF4EBP3O60516 100 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-209ENST00000635750 FP248Q71RG6 208 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-209ENST00000635750 MGAM2Q2M2H8 2515 aa3.41□□□□□ -1.86
SCN1A-209ENST00000635750 CFAP46Q8IYW2 2715 aa3.41□□□□□ -1.86
SCN1A-209ENST00000635750 Q5W150 140 aa3.4□□□□□ -1.86
SCN1A-209ENST00000635750 CENPFP49454 3210 aa3.4□□□□□ -1.86
SCN1A-209ENST00000635750 PRRC2CQ9Y520 2896 aaKnown RBP3.4□□□□□ -1.87
SCN1A-209ENST00000635750 LINC01558Q9Y6Z2 57 aa3.4□□□□□ -1.87
SCN1A-209ENST00000635750 ADM2Q7Z4H4 148 aa3.4□□□□□ -1.87
SCN1A-209ENST00000635750 CEP295Q9C0D2 2601 aa3.39□□□□□ -1.87
SCN1A-209ENST00000635750 LCE6AA0A183 80 aa3.39□□□□□ -1.87
SCN1A-209ENST00000635750 SRCAPQ6ZRS2 3230 aa3.38□□□□□ -1.87
SCN1A-209ENST00000635750 MMP24-AS1A0A0U1RRL7 71 aa3.38□□□□□ -1.87
SCN1A-209ENST00000635750 HECTD1Q9ULT8 2610 aa3.37□□□□□ -1.87
SCN1A-209ENST00000635750 KRTAP1-3Q8IUG1 177 aa3.37□□□□□ -1.87
SCN1A-209ENST00000635750 DMBT1Q9UGM3 2413 aaPredicted RBP3.35□□□□□ -1.87
SCN1A-209ENST00000635750 KRTAP1-1Q07627 177 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms