RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 LRP2P98164 4655 aa8.33□□□□□ -1.08
PNKP-223ENST00000629179 ZNF815PA8K554 130 aa8.32□□□□□ -1.08
PNKP-223ENST00000629179 UBR4Q5T4S7 5183 aa8.31□□□□□ -1.08
PNKP-223ENST00000629179 SMCR5Q8TEV8 140 aa8.31□□□□□ -1.08
PNKP-223ENST00000629179 SPRR4Q96PI1 79 aa8.31□□□□□ -1.08
PNKP-223ENST00000629179 C20orf202A1L168 122 aa8.3□□□□□ -1.08
PNKP-223ENST00000629179 TIMM17BO60830 172 aa8.3□□□□□ -1.08
PNKP-223ENST00000629179 IGLV6-57P01721 117 aa8.3□□□□□ -1.08
PNKP-223ENST00000629179 S100A7L2Q5SY68 101 aa8.3□□□□□ -1.08
PNKP-223ENST00000629179 ATOH7Q8N100 152 aa8.3□□□□□ -1.08
PNKP-223ENST00000629179 C3orf22Q8N5N4 141 aa8.3□□□□□ -1.08
PNKP-223ENST00000629179 LINC00308Q8TCZ7 52 aa8.3□□□□□ -1.08
PNKP-223ENST00000629179 B5MCH6 92 aa8.29□□□□□ -1.08
PNKP-223ENST00000629179 PRR4Q16378 134 aa8.29□□□□□ -1.08
PNKP-223ENST00000629179 ANKRD39Q53RE8 183 aa8.29□□□□□ -1.08
PNKP-223ENST00000629179 LINC00304Q8N9R0 145 aa8.27□□□□□ -1.09
PNKP-223ENST00000629179 VAMP8Q9BV40 100 aa8.27□□□□□ -1.09
PNKP-223ENST00000629179 PPDPFQ9H3Y8 114 aa8.27□□□□□ -1.09
PNKP-223ENST00000629179 ZNF706Q9Y5V0 76 aaPredicted RBP8.27□□□□□ -1.09
PNKP-223ENST00000629179 TRAV23DV6A0A075B6W5 121 aa8.26□□□□□ -1.09
PNKP-223ENST00000629179 ERC2-IT1O76042 136 aa8.26□□□□□ -1.09
PNKP-223ENST00000629179 CTAG1AP78358 180 aa8.26□□□□□ -1.09
PNKP-223ENST00000629179 SPANXCQ9NY87 97 aa8.26□□□□□ -1.09
PNKP-223ENST00000629179 Q6ZRX8 168 aa8.25□□□□□ -1.09
PNKP-223ENST00000629179 Q9BRP9 147 aa8.25□□□□□ -1.09
PNKP-223ENST00000629179 SCGB1D4Q6XE38 83 aa8.24□□□□□ -1.09
PNKP-223ENST00000629179 OR13C6PQ8NH95 151 aa8.24□□□□□ -1.09
PNKP-223ENST00000629179 ZNF73O43830 326 aaPredicted RBP8.23□□□□□ -1.09
PNKP-223ENST00000629179 GAGE2AQ6NT46 116 aa8.23□□□□□ -1.09
PNKP-223ENST00000629179 PCP2Q8IVA1 136 aa8.23□□□□□ -1.09
PNKP-223ENST00000629179 SPANXDQ9BXN6 97 aa8.22□□□□□ -1.09
PNKP-223ENST00000629179 PRO1933Q9H354 126 aa8.22□□□□□ -1.09
PNKP-223ENST00000629179 LPAP08519 4548 aa8.22□□□□□ -1.09
PNKP-223ENST00000629179 HSBP1L1C9JCN9 74 aa8.21□□□□□ -1.1
PNKP-223ENST00000629179 LINC00483Q53H64 154 aa8.21□□□□□ -1.1
PNKP-223ENST00000629179 RETNLBQ9BQ08 111 aa8.21□□□□□ -1.1
PNKP-223ENST00000629179 UQCR10Q9UDW1 63 aa8.2□□□□□ -1.1
PNKP-223ENST00000629179 C14orf144Q96I85 54 aa8.19□□□□□ -1.1
PNKP-223ENST00000629179 CBY1Q9Y3M2 126 aa8.19□□□□□ -1.1
PNKP-223ENST00000629179 M0R143 59 aa8.18□□□□□ -1.1
PNKP-223ENST00000629179 HINT1P49773 126 aaPredicted RBP8.18□□□□□ -1.1
PNKP-223ENST00000629179 SPATA45Q537H7 98 aa8.18□□□□□ -1.1
PNKP-223ENST00000629179 Q8NBF4 154 aa8.18□□□□□ -1.1
PNKP-223ENST00000629179 IFITM1P13164 125 aa8.17□□□□□ -1.1
PNKP-223ENST00000629179 MUSTN1Q8IVN3 82 aa8.17□□□□□ -1.1
PNKP-223ENST00000629179 PAM16Q9Y3D7 125 aa8.17□□□□□ -1.1
PNKP-223ENST00000629179 IGLV9-49A0A0B4J1Y8 123 aa8.16□□□□□ -1.1
PNKP-223ENST00000629179 C4orf48Q5BLP8 95 aa8.16□□□□□ -1.1
PNKP-223ENST00000629179 SPAG11AQ6PDA7 123 aa8.16□□□□□ -1.1
PNKP-223ENST00000629179 Q6ZVH6 145 aa8.16□□□□□ -1.1
PNKP-223ENST00000629179 ST20-AS1Q8NBB2 130 aa8.16□□□□□ -1.1
PNKP-223ENST00000629179 COPS9Q8WXC6 57 aa8.16□□□□□ -1.1
PNKP-223ENST00000629179 MOBPQ13875 183 aa8.15□□□□□ -1.1
PNKP-223ENST00000629179 C6orf99Q4VX62 202 aa8.14□□□□□ -1.11
PNKP-223ENST00000629179 COX7BP24311 80 aa8.13□□□□□ -1.11
PNKP-223ENST00000629179 A6NDN8 102 aa8.12□□□□□ -1.11
PNKP-223ENST00000629179 ELOF1P60002 83 aaKnown RBP8.12□□□□□ -1.11
PNKP-223ENST00000629179 SSBP3-AS1Q7Z2R9 100 aa8.12□□□□□ -1.11
PNKP-223ENST00000629179 DHRS4-AS1Q9P1J3 65 aa8.12□□□□□ -1.11
PNKP-223ENST00000629179 IGLV7-46A0A075B6I9 117 aa8.1□□□□□ -1.11
PNKP-223ENST00000629179 SPINK1P00995 79 aa8.09□□□□□ -1.11
PNKP-223ENST00000629179 C9orf153Q5TBE3 101 aa8.09□□□□□ -1.11
PNKP-223ENST00000629179 SLC25A34Q6PIV7 304 aa8.09□□□□□ -1.11
PNKP-223ENST00000629179 RNF213Q63HN8 5207 aa8.08□□□□□ -1.12
PNKP-223ENST00000629179 TRAV13-2A0A0B4J235 113 aa8.07□□□□□ -1.12
PNKP-223ENST00000629179 TRBV7-6A0A0J9YX20 115 aa8.07□□□□□ -1.12
PNKP-223ENST00000629179 SPRR1BP22528 89 aa8.07□□□□□ -1.12
PNKP-223ENST00000629179 COL5A1-AS1Q5SY13 56 aa8.07□□□□□ -1.12
PNKP-223ENST00000629179 SNHG12Q9BXW3 62 aa8.07□□□□□ -1.12
PNKP-223ENST00000629179 A0A1B0GWB2 263 aa8.06□□□□□ -1.12
PNKP-223ENST00000629179 SMIM11BQ8TCY0 68 aa8.06□□□□□ -1.12
PNKP-223ENST00000629179 A4D1N5 150 aa8.05□□□□□ -1.12
PNKP-223ENST00000629179 DLEU1O43261 78 aa8.05□□□□□ -1.12
PNKP-223ENST00000629179 TAL2Q16559 108 aa8.05□□□□□ -1.12
PNKP-223ENST00000629179 DEFB105AQ8NG35 78 aa8.05□□□□□ -1.12
PNKP-223ENST00000629179 COX8AP10176 69 aa8.04□□□□□ -1.12
PNKP-223ENST00000629179 TPRXLQ17RH7 258 aa8.04□□□□□ -1.12
PNKP-223ENST00000629179 FP248Q71RG6 208 aaPredicted RBP8.03□□□□□ -1.12
PNKP-223ENST00000629179 CDIP1Q9H305 208 aa8.03□□□□□ -1.12
PNKP-223ENST00000629179 LAMTOR3Q9UHA4 124 aa8.03□□□□□ -1.12
PNKP-223ENST00000629179 RPS29P62273 56 aaKnown RBP8.02□□□□□ -1.13
PNKP-223ENST00000629179 Q1RN00 199 aa8.02□□□□□ -1.13
PNKP-223ENST00000629179 Q8N377 158 aa8.02□□□□□ -1.13
PNKP-223ENST00000629179 TEX49A0A1B0GTD5 131 aa8.01□□□□□ -1.13
PNKP-223ENST00000629179 HIST1H4GQ99525 98 aa8.01□□□□□ -1.13
PNKP-223ENST00000629179 LINC01547P58512 204 aaPredicted RBP8□□□□□ -1.13
PNKP-223ENST00000629179 A0A1B0GV90 55 aa7.99□□□□□ -1.13
PNKP-223ENST00000629179 SLC25A20O43772 301 aa7.99□□□□□ -1.13
PNKP-223ENST00000629179 HRCT1Q6UXD1 115 aa7.99□□□□□ -1.13
PNKP-223ENST00000629179 SMIM29Q86T20 159 aa7.98□□□□□ -1.13
PNKP-223ENST00000629179 IGLV5-48A0A075B6I7 105 aa7.97□□□□□ -1.13
PNKP-223ENST00000629179 VAMP3Q15836 100 aa7.97□□□□□ -1.13
PNKP-223ENST00000629179 BATFQ16520 125 aa7.97□□□□□ -1.13
PNKP-223ENST00000629179 KRTAP13-3Q3SY46 172 aa7.97□□□□□ -1.13
PNKP-223ENST00000629179 NHP2Q9NX24 153 aaKnown RBP7.97□□□□□ -1.13
PNKP-223ENST00000629179 HIGD1BQ9P298 99 aa7.97□□□□□ -1.13
PNKP-223ENST00000629179 HSD52Q0P140 79 aa7.95□□□□□ -1.14
PNKP-223ENST00000629179 LINC00575Q6W349 94 aa7.95□□□□□ -1.14
PNKP-223ENST00000629179 A0A0G2JQZ4 141 aa7.93□□□□□ -1.14
PNKP-223ENST00000629179 BVES-AS1Q5T3Y7 98 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms