RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 PLAC8Q9NZF1 115 aa4.93□□□□□ -1.62
CLK1-215ENST00000621181 PKHD1L1Q86WI1 4243 aa4.92□□□□□ -1.62
CLK1-215ENST00000621181 IGKV2-24A0A0C4DH68 120 aa4.92□□□□□ -1.62
CLK1-215ENST00000621181 TEX49A0A1B0GTD5 131 aa4.92□□□□□ -1.62
CLK1-215ENST00000621181 HERV-K104P63124 156 aa4.92□□□□□ -1.62
CLK1-215ENST00000621181 PRR3P79522 188 aaKnown RBP4.92□□□□□ -1.62
CLK1-215ENST00000621181 LCE3BQ5TA77 95 aa4.92□□□□□ -1.62
CLK1-215ENST00000621181 IGLV4-60A0A075B6I1 120 aa4.91□□□□□ -1.62
CLK1-215ENST00000621181 COX6CP09669 75 aa4.91□□□□□ -1.62
CLK1-215ENST00000621181 C2orf82Q6UX34 121 aa4.91□□□□□ -1.62
CLK1-215ENST00000621181 IGHV3OR16-9A0A0B4J2B5 98 aa4.9□□□□□ -1.62
CLK1-215ENST00000621181 A0A1B0GUV1 79 aa4.9□□□□□ -1.62
CLK1-215ENST00000621181 COX7A2LO14548 114 aa4.9□□□□□ -1.62
CLK1-215ENST00000621181 CKS1BP61024 79 aa4.9□□□□□ -1.62
CLK1-215ENST00000621181 CFAP161Q6P656 301 aa4.9□□□□□ -1.62
CLK1-215ENST00000621181 REG3GQ6UW15 175 aa4.9□□□□□ -1.62
CLK1-215ENST00000621181 C22orf24Q9Y442 160 aa4.9□□□□□ -1.62
CLK1-215ENST00000621181 A0A1B0GV72 72 aa4.9□□□□□ -1.63
CLK1-215ENST00000621181 UBE2L6O14933 153 aa4.9□□□□□ -1.63
CLK1-215ENST00000621181 COPS9Q8WXC6 57 aa4.9□□□□□ -1.63
CLK1-215ENST00000621181 IGKV3OR2-268A0A0C4DH90 116 aa4.89□□□□□ -1.63
CLK1-215ENST00000621181 FAM240AA0A1B0GVK7 77 aa4.89□□□□□ -1.63
CLK1-215ENST00000621181 HIGD2BQ4VC39 106 aa4.89□□□□□ -1.63
CLK1-215ENST00000621181 SPINK6Q6UWN8 80 aa4.89□□□□□ -1.63
CLK1-215ENST00000621181 C15orf56Q8N910 161 aa4.89□□□□□ -1.63
CLK1-215ENST00000621181 IGKV2-28A0A075B6P5 120 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 A0A087WZ39 114 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 IGKV2D-28P01615 120 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 Q6Q795 121 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 COX7B2Q8TF08 81 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 A0A0U1RRA0 63 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 TRACP01848 142 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 KRTAP10-8P60410 259 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 FAM218AQ96MZ4 157 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 LINC00474Q9P2X8 69 aa4.88□□□□□ -1.63
CLK1-215ENST00000621181 TNXBP22105 4242 aa4.87□□□□□ -1.63
CLK1-215ENST00000621181 A0A096LNI7 61 aa4.87□□□□□ -1.63
CLK1-215ENST00000621181 RPL28P46779 137 aaKnown RBP4.87□□□□□ -1.63
CLK1-215ENST00000621181 MEIG1Q5JSS6 88 aa4.87□□□□□ -1.63
CLK1-215ENST00000621181 LINC00337Q8N6G1 96 aa4.87□□□□□ -1.63
CLK1-215ENST00000621181 Q6ZRP5 223 aa4.86□□□□□ -1.63
CLK1-215ENST00000621181 MIR7-3HGQ8N6C7 128 aa4.86□□□□□ -1.63
CLK1-215ENST00000621181 LINC00959A0A1B0GUT2 108 aa4.86□□□□□ -1.63
CLK1-215ENST00000621181 CHCHD10Q8WYQ3 142 aaPredicted RBP4.86□□□□□ -1.63
CLK1-215ENST00000621181 PKIGQ9Y2B9 76 aa4.86□□□□□ -1.63
CLK1-215ENST00000621181 GVQW2A0A096LPI5 108 aaPredicted RBP4.85□□□□□ -1.63
CLK1-215ENST00000621181 TRAV13-2A0A0B4J235 113 aa4.85□□□□□ -1.63
CLK1-215ENST00000621181 LINC01561Q8N1V8 128 aa4.85□□□□□ -1.63
CLK1-215ENST00000621181 GAGE2BQ13066 116 aa4.84□□□□□ -1.63
CLK1-215ENST00000621181 GAGE2EQ4V326 116 aa4.84□□□□□ -1.63
CLK1-215ENST00000621181 SND1-IT1Q9HBX3 110 aa4.84□□□□□ -1.63
CLK1-215ENST00000621181 GAGE2DQ9UEU5 116 aa4.84□□□□□ -1.63
CLK1-215ENST00000621181 TRBV7-7A0A0K0K1E9 115 aa4.83□□□□□ -1.64
CLK1-215ENST00000621181 SNCGO76070 127 aa4.83□□□□□ -1.64
CLK1-215ENST00000621181 BAALC-AS2P0C853 105 aa4.83□□□□□ -1.64
CLK1-215ENST00000621181 C5orf38Q86SI9 138 aa4.83□□□□□ -1.64
CLK1-215ENST00000621181 XCL1P47992 114 aa4.83□□□□□ -1.64
CLK1-215ENST00000621181 NDUFV3P56181 108 aaKnown RBP4.83□□□□□ -1.64
CLK1-215ENST00000621181 SMIM11BQ8TCY0 68 aa4.83□□□□□ -1.64
CLK1-215ENST00000621181 LINC00526Q96FQ7 95 aa4.83□□□□□ -1.64
CLK1-215ENST00000621181 KRTAP9-9Q9BYP9 154 aa4.83□□□□□ -1.64
CLK1-215ENST00000621181 KRTAP9-4Q9BYQ2 154 aa4.83□□□□□ -1.64
CLK1-215ENST00000621181 ACYP1P07311 99 aa4.82□□□□□ -1.64
CLK1-215ENST00000621181 KIAA0087Q14695 138 aa4.82□□□□□ -1.64
CLK1-215ENST00000621181 Q8IZM0 81 aa4.82□□□□□ -1.64
CLK1-215ENST00000621181 SMCR5Q8TEV8 140 aa4.82□□□□□ -1.64
CLK1-215ENST00000621181 OBSCN-AS1Q96MR7 158 aa4.82□□□□□ -1.64
CLK1-215ENST00000621181 TOMM7Q9P0U1 55 aa4.82□□□□□ -1.64
CLK1-215ENST00000621181 LINC00158P58513 81 aa4.81□□□□□ -1.64
CLK1-215ENST00000621181 ANAPC13Q9BS18 74 aa4.81□□□□□ -1.64
CLK1-215ENST00000621181 ZNF561-AS1K7EIQ3 104 aa4.81□□□□□ -1.64
CLK1-215ENST00000621181 SYCNQ0VAF6 134 aa4.81□□□□□ -1.64
CLK1-215ENST00000621181 H0YGX0 51 aa4.8□□□□□ -1.64
CLK1-215ENST00000621181 MALP21145 153 aa4.8□□□□□ -1.64
CLK1-215ENST00000621181 LINC00167Q96N53 147 aa4.8□□□□□ -1.64
CLK1-215ENST00000621181 SS18Q15532 418 aa4.79□□□□□ -1.64
CLK1-215ENST00000621181 C9orf129Q5T035 196 aaKnown RBP4.79□□□□□ -1.64
CLK1-215ENST00000621181 CD164L2Q6UWJ8 174 aa4.79□□□□□ -1.64
CLK1-215ENST00000621181 IMUPQ9GZP8 106 aa4.79□□□□□ -1.64
CLK1-215ENST00000621181 PSORS1C2Q9UIG4 136 aa4.79□□□□□ -1.64
CLK1-215ENST00000621181 LOC107984640A0A0U1RRK4 108 aa4.79□□□□□ -1.64
CLK1-215ENST00000621181 PFN2P35080 140 aa4.79□□□□□ -1.64
CLK1-215ENST00000621181 C6orf226Q5I0X4 101 aa4.79□□□□□ -1.64
CLK1-215ENST00000621181 LINC00643Q86TS7 51 aa4.79□□□□□ -1.64
CLK1-215ENST00000621181 C1orf137Q5JT78 98 aa4.78□□□□□ -1.64
CLK1-215ENST00000621181 A0A1W2PNN7 141 aa4.77□□□□□ -1.65
CLK1-215ENST00000621181 CCDC179H3BU77 68 aa4.77□□□□□ -1.65
CLK1-215ENST00000621181 NDUFC2O95298 119 aa4.77□□□□□ -1.65
CLK1-215ENST00000621181 COX17Q14061 63 aa4.77□□□□□ -1.65
CLK1-215ENST00000621181 C9orf116Q5BN46 136 aaPredicted RBP4.77□□□□□ -1.65
CLK1-215ENST00000621181 PRR26Q8N8Z3 221 aa4.77□□□□□ -1.65
CLK1-215ENST00000621181 Q8NDZ9 215 aa4.77□□□□□ -1.65
CLK1-215ENST00000621181 A0A0U1RQV1 116 aa4.76□□□□□ -1.65
CLK1-215ENST00000621181 CXCL5P42830 114 aa4.76□□□□□ -1.65
CLK1-215ENST00000621181 RPL18AQ02543 176 aaKnown RBP4.76□□□□□ -1.65
CLK1-215ENST00000621181 CAMK2N2Q96S95 79 aa4.76□□□□□ -1.65
CLK1-215ENST00000621181 LPAP08519 4548 aa4.76□□□□□ -1.65
CLK1-215ENST00000621181 DIRC1Q969H9 104 aa4.76□□□□□ -1.65
CLK1-215ENST00000621181 A0A1B0GX51 115 aa4.75□□□□□ -1.65
CLK1-215ENST00000621181 PRR4Q16378 134 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms