RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 DDTP30046 118 aa12.09□□□□□ -0.47
UPF3A-211ENST00000618700 HNRNPA3P51991 378 aaKnown RBP12.09□□□□□ -0.47
UPF3A-211ENST00000618700 LINC00518Q8N0U6 118 aa12.09□□□□□ -0.47
UPF3A-211ENST00000618700 LINC00337Q8N6G1 96 aa12.08□□□□□ -0.48
UPF3A-211ENST00000618700 KCNQ1DNQ9H478 68 aa12.08□□□□□ -0.48
UPF3A-211ENST00000618700 PRYO14603 147 aa12.07□□□□□ -0.48
UPF3A-211ENST00000618700 BCE1O60756 84 aa12.07□□□□□ -0.48
UPF3A-211ENST00000618700 IGLV7-43P04211 117 aa12.07□□□□□ -0.48
UPF3A-211ENST00000618700 REG3GQ6UW15 175 aa12.07□□□□□ -0.48
UPF3A-211ENST00000618700 TMEM126AQ9H061 195 aa12.07□□□□□ -0.48
UPF3A-211ENST00000618700 TAL2Q16559 108 aa12.06□□□□□ -0.48
UPF3A-211ENST00000618700 S100A7L2Q5SY68 101 aa12.06□□□□□ -0.48
UPF3A-211ENST00000618700 C12orf57Q99622 126 aa12.06□□□□□ -0.48
UPF3A-211ENST00000618700 A4D1N5 150 aa12.05□□□□□ -0.48
UPF3A-211ENST00000618700 SPRR1AP35321 89 aa12.05□□□□□ -0.48
UPF3A-211ENST00000618700 PRO1933Q9H354 126 aa12.04□□□□□ -0.48
UPF3A-211ENST00000618700 INAFM2P0DMQ5 153 aa12.03□□□□□ -0.48
UPF3A-211ENST00000618700 KRTAP13-1Q8IUC0 172 aa12.03□□□□□ -0.48
UPF3A-211ENST00000618700 OR13C6PQ8NH95 151 aa12.02□□□□□ -0.49
UPF3A-211ENST00000618700 TRAV23DV6A0A075B6W5 121 aa12.01□□□□□ -0.49
UPF3A-211ENST00000618700 KRTAP4-16G5E9R7 235 aaPredicted RBP12.01□□□□□ -0.49
UPF3A-211ENST00000618700 HSD52Q0P140 79 aa12.01□□□□□ -0.49
UPF3A-211ENST00000618700 TRAV13-2A0A0B4J235 113 aa12□□□□□ -0.49
UPF3A-211ENST00000618700 SPINK6Q6UWN8 80 aa12□□□□□ -0.49
UPF3A-211ENST00000618700 CEND1Q8N111 149 aa12□□□□□ -0.49
UPF3A-211ENST00000618700 ZNF861PO60384 105 aa11.99□□□□□ -0.49
UPF3A-211ENST00000618700 CBY1Q9Y3M2 126 aa11.99□□□□□ -0.49
UPF3A-211ENST00000618700 FAM19A1Q7Z5A9 133 aa11.98□□□□□ -0.49
UPF3A-211ENST00000618700 A6NDN8 102 aa11.97□□□□□ -0.49
UPF3A-211ENST00000618700 ZNF73O43830 326 aaPredicted RBP11.97□□□□□ -0.49
UPF3A-211ENST00000618700 RPL28P46779 137 aaKnown RBP11.97□□□□□ -0.49
UPF3A-211ENST00000618700 UBE2AP49459 152 aa11.97□□□□□ -0.49
UPF3A-211ENST00000618700 FXYD2P54710 66 aa11.96□□□□□ -0.49
UPF3A-211ENST00000618700 PRLHP81277 87 aa11.96□□□□□ -0.49
UPF3A-211ENST00000618700 MYCBP2O75592 4640 aa11.96□□□□□ -0.5
UPF3A-211ENST00000618700 FLG2Q5D862 2391 aaPredicted RBP11.96□□□□□ -0.5
UPF3A-211ENST00000618700 ETDCA0A1B0GVM5 59 aa11.95□□□□□ -0.5
UPF3A-211ENST00000618700 H0Y9J4 135 aa11.95□□□□□ -0.5
UPF3A-211ENST00000618700 CFC1BP0CG36 223 aa11.95□□□□□ -0.5
UPF3A-211ENST00000618700 CFC1P0CG37 223 aa11.95□□□□□ -0.5
UPF3A-211ENST00000618700 TSTD3H0UI37 97 aa11.94□□□□□ -0.5
UPF3A-211ENST00000618700 LCE3BQ5TA77 95 aa11.94□□□□□ -0.5
UPF3A-211ENST00000618700 DIRC1Q969H9 104 aa11.94□□□□□ -0.5
UPF3A-211ENST00000618700 A0A0B4J2C4 111 aa11.93□□□□□ -0.5
UPF3A-211ENST00000618700 B5MCH6 92 aa11.93□□□□□ -0.5
UPF3A-211ENST00000618700 RPL13AP40429 203 aaKnown RBP11.91□□□□□ -0.5
UPF3A-211ENST00000618700 Q6ZRX8 168 aa11.91□□□□□ -0.5
UPF3A-211ENST00000618700 FAT3Q8TDW7 4589 aa11.91□□□□□ -0.5
UPF3A-211ENST00000618700 C6orf99Q4VX62 202 aa11.9□□□□□ -0.5
UPF3A-211ENST00000618700 SMIM11BQ8TCY0 68 aa11.9□□□□□ -0.5
UPF3A-211ENST00000618700 LRP1Q07954 4544 aaKnown RBP11.89□□□□□ -0.51
UPF3A-211ENST00000618700 RAB37Q96AX2 223 aa11.88□□□□□ -0.51
UPF3A-211ENST00000618700 HINT1P49773 126 aaPredicted RBP11.87□□□□□ -0.51
UPF3A-211ENST00000618700 ELOF1P60002 83 aaKnown RBP11.87□□□□□ -0.51
UPF3A-211ENST00000618700 CTAG1AP78358 180 aa11.87□□□□□ -0.51
UPF3A-211ENST00000618700 SMCR5Q8TEV8 140 aa11.87□□□□□ -0.51
UPF3A-211ENST00000618700 Q9BRP9 147 aa11.87□□□□□ -0.51
UPF3A-211ENST00000618700 HIGD2AQ9BW72 106 aa11.87□□□□□ -0.51
UPF3A-211ENST00000618700 TRBV7-6A0A0J9YX20 115 aa11.86□□□□□ -0.51
UPF3A-211ENST00000618700 A0A1B0GWB2 263 aa11.86□□□□□ -0.51
UPF3A-211ENST00000618700 BVES-AS1Q5T3Y7 98 aa11.86□□□□□ -0.51
UPF3A-211ENST00000618700 NHP2Q9NX24 153 aaKnown RBP11.85□□□□□ -0.51
UPF3A-211ENST00000618700 KRTAP1-4P0C5Y4 121 aa11.84□□□□□ -0.51
UPF3A-211ENST00000618700 COX7BP24311 80 aa11.84□□□□□ -0.51
UPF3A-211ENST00000618700 PRO1854Q9UHT4 67 aa11.83□□□□□ -0.52
UPF3A-211ENST00000618700 K7ERJ3 54 aa11.82□□□□□ -0.52
UPF3A-211ENST00000618700 M0R143 59 aa11.82□□□□□ -0.52
UPF3A-211ENST00000618700 H7C2G1 150 aa11.81□□□□□ -0.52
UPF3A-211ENST00000618700 ERC2-IT1O76042 136 aa11.81□□□□□ -0.52
UPF3A-211ENST00000618700 OXTP01178 125 aa11.81□□□□□ -0.52
UPF3A-211ENST00000618700 KRTAP29-1A8MX34 341 aaPredicted RBP11.8□□□□□ -0.52
UPF3A-211ENST00000618700 LINC01600Q96MT4 127 aa11.79□□□□□ -0.52
UPF3A-211ENST00000618700 DHRS4-AS1Q9P1J3 65 aa11.79□□□□□ -0.52
UPF3A-211ENST00000618700 SPRR4Q96PI1 79 aa11.77□□□□□ -0.53
UPF3A-211ENST00000618700 VAMP3Q15836 100 aa11.76□□□□□ -0.53
UPF3A-211ENST00000618700 ZNF706Q9Y5V0 76 aaPredicted RBP11.76□□□□□ -0.53
UPF3A-211ENST00000618700 TNXBP22105 4242 aa11.76□□□□□ -0.53
UPF3A-211ENST00000618700 Q1RN00 199 aa11.75□□□□□ -0.53
UPF3A-211ENST00000618700 DMBT1Q9UGM3 2413 aaPredicted RBP11.74□□□□□ -0.53
UPF3A-211ENST00000618700 TSPAN13O95857 204 aa11.73□□□□□ -0.53
UPF3A-211ENST00000618700 MT1HL1P0DM35 61 aa11.73□□□□□ -0.53
UPF3A-211ENST00000618700 ANAPC11Q9NYG5 84 aa11.73□□□□□ -0.53
UPF3A-211ENST00000618700 LINC00575Q6W349 94 aa11.72□□□□□ -0.53
UPF3A-211ENST00000618700 TRIAP1O43715 76 aa11.71□□□□□ -0.53
UPF3A-211ENST00000618700 FAM229BQ4G0N7 80 aa11.71□□□□□ -0.53
UPF3A-211ENST00000618700 LINC00483Q53H64 154 aa11.71□□□□□ -0.53
UPF3A-211ENST00000618700 ST20-AS1Q8NBB2 130 aa11.71□□□□□ -0.53
UPF3A-211ENST00000618700 A0A087X002 238 aa11.7□□□□□ -0.54
UPF3A-211ENST00000618700 PRR26Q8N8Z3 221 aa11.7□□□□□ -0.54
UPF3A-211ENST00000618700 KRTAP10-8P60410 259 aa11.69□□□□□ -0.54
UPF3A-211ENST00000618700 H0YGX0 51 aa11.68□□□□□ -0.54
UPF3A-211ENST00000618700 KRTAP9-9Q9BYP9 154 aa11.68□□□□□ -0.54
UPF3A-211ENST00000618700 KRTAP9-4Q9BYQ2 154 aa11.68□□□□□ -0.54
UPF3A-211ENST00000618700 SLC25A20O43772 301 aa11.67□□□□□ -0.54
UPF3A-211ENST00000618700 CRYGAP11844 174 aa11.67□□□□□ -0.54
UPF3A-211ENST00000618700 GAGE2AQ6NT46 116 aa11.67□□□□□ -0.54
UPF3A-211ENST00000618700 hADV29S1A0JD25 119 aa11.66□□□□□ -0.54
UPF3A-211ENST00000618700 BATFQ16520 125 aa11.66□□□□□ -0.54
UPF3A-211ENST00000618700 SPRR1BP22528 89 aa11.65□□□□□ -0.54
UPF3A-211ENST00000618700 KRTAP13-2Q52LG2 175 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms