RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 OCIAD2Q56VL3 154 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 CFAP126Q5VTH2 177 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 LCN15Q6UWW0 184 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 LINC00269Q8N2A0 174 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 TRGV9Q99603 122 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 TMEM191AQ9H0A3 160 aa2.27□□□□□ -2.05
LINC00540-201ENST00000611481 COLCA2A8K830 154 aa2.26□□□□□ -2.05
LINC00540-201ENST00000611481 CEBPZOSA8MTT3 80 aa2.26□□□□□ -2.05
LINC00540-201ENST00000611481 F6UZH7 168 aa2.26□□□□□ -2.05
LINC00540-201ENST00000611481 CFDP00746 253 aaPredicted RBP2.26□□□□□ -2.05
LINC00540-201ENST00000611481 MT2AP02795 61 aa2.26□□□□□ -2.05
LINC00540-201ENST00000611481 FOXA3P55318 350 aaPredicted RBP2.26□□□□□ -2.05
LINC00540-201ENST00000611481 C9orf116Q5BN46 136 aaPredicted RBP2.26□□□□□ -2.05
LINC00540-201ENST00000611481 OR2T35Q8NGX2 323 aa2.26□□□□□ -2.05
LINC00540-201ENST00000611481 C14orf144Q96I85 54 aa2.26□□□□□ -2.05
LINC00540-201ENST00000611481 AGPAT4-IT1Q9H0P7 198 aa2.26□□□□□ -2.05
LINC00540-201ENST00000611481 ATG5Q9H1Y0 275 aa2.26□□□□□ -2.05
LINC00540-201ENST00000611481 R4GN34 69 aa2.26□□□□□ -2.05
LINC00540-201ENST00000611481 HBDP02042 147 aa2.25□□□□□ -2.05
LINC00540-201ENST00000611481 MT1FP04733 61 aa2.25□□□□□ -2.05
LINC00540-201ENST00000611481 TRGC1P0CF51 173 aa2.25□□□□□ -2.05
LINC00540-201ENST00000611481 TPT1P13693 172 aaKnown RBP2.25□□□□□ -2.05
LINC00540-201ENST00000611481 MRPS36P82909 103 aaKnown RBP2.25□□□□□ -2.05
LINC00540-201ENST00000611481 NMSQ5H8A3 153 aa2.25□□□□□ -2.05
LINC00540-201ENST00000611481 TMEM91Q6ZNR0 172 aa2.25□□□□□ -2.05
LINC00540-201ENST00000611481 FXYD6Q9H0Q3 95 aa2.25□□□□□ -2.05
LINC00540-201ENST00000611481 FAM236AA0A1B0GUQ0 79 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 FAM236BA0A1B0GV22 79 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 M0R3E3 92 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 LYRM1O43325 122 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 S100A8P05109 93 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 FABP4P15090 132 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 FGF7P21781 194 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 KRTAP13-2Q52LG2 175 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 SPANXN5Q5MJ07 72 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 TEN1Q86WV5 123 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 CHCHD1Q96BP2 118 aaKnown RBP2.24□□□□□ -2.05
LINC00540-201ENST00000611481 PSMG3Q9BT73 122 aaPredicted RBP2.24□□□□□ -2.05
LINC00540-201ENST00000611481 NIT2Q9NQR4 276 aa2.24□□□□□ -2.05
LINC00540-201ENST00000611481 C20orf202A1L168 122 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 C17orf112F2Z3M2 114 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 HYPMO75409 117 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 NMBP08949 121 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 IZUMO2Q6UXV1 221 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 Q6ZQT0 140 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 ATOH7Q8N100 152 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 DEDD2Q8WXF8 326 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 COMMD3Q9UBI1 195 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 UBE2D4Q9Y2X8 147 aa2.23□□□□□ -2.05
LINC00540-201ENST00000611481 IGKV2-40A0A087WW87 121 aaPredicted RBP2.22□□□□□ -2.05
LINC00540-201ENST00000611481 TRBV6-8A0A0A6YYG3 113 aa2.22□□□□□ -2.05
LINC00540-201ENST00000611481 HMSDA8MTL9 139 aa2.22□□□□□ -2.05
LINC00540-201ENST00000611481 G3V3Q6 166 aa2.22□□□□□ -2.05
LINC00540-201ENST00000611481 IGKV2D-40P01614 121 aaPredicted RBP2.22□□□□□ -2.05
LINC00540-201ENST00000611481 KRTAP10-10P60014 251 aa2.22□□□□□ -2.05
LINC00540-201ENST00000611481 TMEM258P61165 79 aa2.22□□□□□ -2.05
LINC00540-201ENST00000611481 CMTM2Q8TAZ6 248 aa2.22□□□□□ -2.05
LINC00540-201ENST00000611481 LINC00526Q96FQ7 95 aa2.22□□□□□ -2.05
LINC00540-201ENST00000611481 C14orf132Q9NPU4 83 aa2.22□□□□□ -2.05
LINC00540-201ENST00000611481 TPRKBQ9Y3C4 175 aa2.22□□□□□ -2.05
LINC00540-201ENST00000611481 IGKV2-28A0A075B6P5 120 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 GVQW2A0A096LPI5 108 aaPredicted RBP2.21□□□□□ -2.06
LINC00540-201ENST00000611481 H3BQ15 152 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 IGKV2D-28P01615 120 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 PMP2P02689 132 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 IL5P05113 134 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 BAALC-AS2P0C853 105 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 HRES1P13985 223 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 GNG4P50150 75 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 PKIAP61925 76 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 PYDC2Q56P42 97 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 CLEC2BQ92478 149 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 Q9H521 79 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 LSM2Q9Y333 95 aaKnown RBP2.21□□□□□ -2.06
LINC00540-201ENST00000611481 AP4S1Q9Y587 144 aa2.21□□□□□ -2.06
LINC00540-201ENST00000611481 LOC100130705A0A1B0GUX0 176 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 SMIM31A0A1B0GVY4 71 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 A0A1W2PNM2 257 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 hDV103S1A0JD37 113 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 AKAIN1P0CW23 69 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 IGLC2P0DOY2 106 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 PYYP10082 97 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 HINT1P49773 126 aaPredicted RBP2.2□□□□□ -2.06
LINC00540-201ENST00000611481 ROMO1P60602 79 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 ZNF345Q14585 488 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 CYP2G1PQ6ZSU1 146 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 HYLS1Q96M11 299 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 NAA38Q9BRA0 125 aaKnown RBP2.2□□□□□ -2.06
LINC00540-201ENST00000611481 Q9BRP9 147 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 CST9LQ9H4G1 147 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 NDUFB11Q9NX14 153 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 SCN3BQ9NY72 215 aa2.2□□□□□ -2.06
LINC00540-201ENST00000611481 TRBV20-1A0A075B6N2 111 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 IGKV2D-26A0A0A0MRZ7 120 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 MUC21A0A140T8X8 626 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 IFITM5A6NNB3 132 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 CD3DP04234 171 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 SPRR2EP22531 72 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 SPRR2BP35325 72 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 SPRR2AP35326 72 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 134.9 ms