RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 DPH3Q96FX2 82 aa7.22□□□□□ -1.25
LINC00539-204ENST00000608957 NAA38Q9BRA0 125 aaKnown RBP7.22□□□□□ -1.25
LINC00539-204ENST00000608957 PLA2G2DQ9UNK4 145 aa7.22□□□□□ -1.25
LINC00539-204ENST00000608957 PRR3P79522 188 aaKnown RBP7.21□□□□□ -1.26
LINC00539-204ENST00000608957 A0A1B0GV90 55 aa7.2□□□□□ -1.26
LINC00539-204ENST00000608957 OXTP01178 125 aa7.2□□□□□ -1.26
LINC00539-204ENST00000608957 OR13C6PQ8NH95 151 aa7.2□□□□□ -1.26
LINC00539-204ENST00000608957 IGLV5-37A0A075B6J1 123 aa7.19□□□□□ -1.26
LINC00539-204ENST00000608957 A0A1W2PPM0 123 aa7.19□□□□□ -1.26
LINC00539-204ENST00000608957 SERTAD4-AS1Q5TG53 156 aa7.19□□□□□ -1.26
LINC00539-204ENST00000608957 FAM168BA1KXE4 195 aa7.18□□□□□ -1.26
LINC00539-204ENST00000608957 M0R378 163 aa7.18□□□□□ -1.26
LINC00539-204ENST00000608957 PSMB2P49721 201 aa7.18□□□□□ -1.26
LINC00539-204ENST00000608957 S100A7L2Q5SY68 101 aa7.18□□□□□ -1.26
LINC00539-204ENST00000608957 LYRM7Q5U5X0 104 aa7.18□□□□□ -1.26
LINC00539-204ENST00000608957 NKAPP1Q8N9T2 125 aa7.18□□□□□ -1.26
LINC00539-204ENST00000608957 TMEM126AQ9H061 195 aa7.18□□□□□ -1.26
LINC00539-204ENST00000608957 A0A1W2PNN7 141 aa7.17□□□□□ -1.26
LINC00539-204ENST00000608957 TRIAP1O43715 76 aa7.17□□□□□ -1.26
LINC00539-204ENST00000608957 IGLV6-57P01721 117 aa7.17□□□□□ -1.26
LINC00539-204ENST00000608957 MT1HL1P0DM35 61 aa7.17□□□□□ -1.26
LINC00539-204ENST00000608957 FABP2P12104 132 aa7.17□□□□□ -1.26
LINC00539-204ENST00000608957 FAM19A5Q7Z5A7 132 aaPredicted RBP7.17□□□□□ -1.26
LINC00539-204ENST00000608957 LINC00474Q9P2X8 69 aa7.17□□□□□ -1.26
LINC00539-204ENST00000608957 TRBV10-3A0A0K0K1G6 114 aa7.16□□□□□ -1.26
LINC00539-204ENST00000608957 SMIM11BQ8TCY0 68 aa7.16□□□□□ -1.26
LINC00539-204ENST00000608957 RPL28P46779 137 aaKnown RBP7.15□□□□□ -1.26
LINC00539-204ENST00000608957 VAMP3Q15836 100 aa7.15□□□□□ -1.26
LINC00539-204ENST00000608957 KRTAP7-1Q8IUC3 87 aa7.15□□□□□ -1.26
LINC00539-204ENST00000608957 C7orf33Q8WU49 177 aa7.15□□□□□ -1.26
LINC00539-204ENST00000608957 M0QXV9 152 aa7.14□□□□□ -1.27
LINC00539-204ENST00000608957 COX6CP09669 75 aa7.14□□□□□ -1.27
LINC00539-204ENST00000608957 SCGB1C2P0DMR2 95 aa7.14□□□□□ -1.27
LINC00539-204ENST00000608957 C22orf24Q9Y442 160 aa7.14□□□□□ -1.27
LINC00539-204ENST00000608957 SPCS1Q9Y6A9 102 aa7.14□□□□□ -1.27
LINC00539-204ENST00000608957 TNXBP22105 4242 aa7.13□□□□□ -1.27
LINC00539-204ENST00000608957 TRAV23DV6A0A075B6W5 121 aa7.13□□□□□ -1.27
LINC00539-204ENST00000608957 GAGE10A6NGK3 116 aa7.13□□□□□ -1.27
LINC00539-204ENST00000608957 K7EP34 96 aa7.13□□□□□ -1.27
LINC00539-204ENST00000608957 MRPL55Q7Z7F7 128 aaKnown RBP7.13□□□□□ -1.27
LINC00539-204ENST00000608957 CBY1Q9Y3M2 126 aa7.13□□□□□ -1.27
LINC00539-204ENST00000608957 TRBV20-1A0A075B6N2 111 aa7.11□□□□□ -1.27
LINC00539-204ENST00000608957 TCL1BO95988 128 aa7.11□□□□□ -1.27
LINC00539-204ENST00000608957 GTF2H5Q6ZYL4 71 aa7.11□□□□□ -1.27
LINC00539-204ENST00000608957 LINC00167Q96N53 147 aa7.11□□□□□ -1.27
LINC00539-204ENST00000608957 PRYO14603 147 aa7.1□□□□□ -1.27
LINC00539-204ENST00000608957 C6orf99Q4VX62 202 aa7.1□□□□□ -1.27
LINC00539-204ENST00000608957 PHF5AQ7RTV0 110 aaKnown RBP7.1□□□□□ -1.27
LINC00539-204ENST00000608957 DIRC1Q969H9 104 aa7.1□□□□□ -1.27
LINC00539-204ENST00000608957 IGLV1-50A0A075B6I6 118 aa7.09□□□□□ -1.27
LINC00539-204ENST00000608957 ZNF73O43830 326 aaPredicted RBP7.09□□□□□ -1.27
LINC00539-204ENST00000608957 ATXN8Q156A1 80 aa7.09□□□□□ -1.27
LINC00539-204ENST00000608957 CLEC2BQ92478 149 aa7.09□□□□□ -1.27
LINC00539-204ENST00000608957 KCNQ1DNQ9H478 68 aa7.09□□□□□ -1.27
LINC00539-204ENST00000608957 RPL37AP8A6NKH3 93 aa7.08□□□□□ -1.28
LINC00539-204ENST00000608957 H0YGX0 51 aa7.08□□□□□ -1.28
LINC00539-204ENST00000608957 LST1O00453 97 aa7.08□□□□□ -1.28
LINC00539-204ENST00000608957 KRTAP11-1Q8IUC1 163 aa7.08□□□□□ -1.28
LINC00539-204ENST00000608957 UBE2V1Q13404 147 aa7.07□□□□□ -1.28
LINC00539-204ENST00000608957 PSORS1C2Q9UIG4 136 aa7.07□□□□□ -1.28
LINC00539-204ENST00000608957 TRBV7-6A0A0J9YX20 115 aa7.06□□□□□ -1.28
LINC00539-204ENST00000608957 H3BMG7 143 aa7.06□□□□□ -1.28
LINC00539-204ENST00000608957 UBE2BP63146 152 aa7.06□□□□□ -1.28
LINC00539-204ENST00000608957 LINC01600Q96MT4 127 aa7.06□□□□□ -1.28
LINC00539-204ENST00000608957 FAM218AQ96MZ4 157 aa7.06□□□□□ -1.28
LINC00539-204ENST00000608957 COX7BP24311 80 aa7.05□□□□□ -1.28
LINC00539-204ENST00000608957 SPRR1AP35321 89 aa7.05□□□□□ -1.28
LINC00539-204ENST00000608957 ELOF1P60002 83 aaKnown RBP7.05□□□□□ -1.28
LINC00539-204ENST00000608957 SPINK6Q6UWN8 80 aa7.05□□□□□ -1.28
LINC00539-204ENST00000608957 TRACP01848 142 aa7.04□□□□□ -1.28
LINC00539-204ENST00000608957 REG3GQ6UW15 175 aa7.04□□□□□ -1.28
LINC00539-204ENST00000608957 HMCN2Q8NDA2 5059 aa7.03□□□□□ -1.28
LINC00539-204ENST00000608957 ETDCA0A1B0GVM5 59 aa7.03□□□□□ -1.28
LINC00539-204ENST00000608957 A0A1B0GX51 115 aa7.03□□□□□ -1.28
LINC00539-204ENST00000608957 KRTAP4-16G5E9R7 235 aaPredicted RBP7.03□□□□□ -1.28
LINC00539-204ENST00000608957 KRTAP10-8P60410 259 aa7.02□□□□□ -1.29
LINC00539-204ENST00000608957 C1orf137Q5JT78 98 aa7.02□□□□□ -1.29
LINC00539-204ENST00000608957 LINC00575Q6W349 94 aa7.02□□□□□ -1.29
LINC00539-204ENST00000608957 B5MCH6 92 aa7.01□□□□□ -1.29
LINC00539-204ENST00000608957 C9JAW5 83 aa7.01□□□□□ -1.29
LINC00539-204ENST00000608957 SLC25A20O43772 301 aa7.01□□□□□ -1.29
LINC00539-204ENST00000608957 DNAL4O96015 105 aa7.01□□□□□ -1.29
LINC00539-204ENST00000608957 Q6ZRX8 168 aa7.01□□□□□ -1.29
LINC00539-204ENST00000608957 MTURNQ8N3F0 131 aa7.01□□□□□ -1.29
LINC00539-204ENST00000608957 hADV29S1A0JD25 119 aa7□□□□□ -1.29
LINC00539-204ENST00000608957 SNCGO76070 127 aa7□□□□□ -1.29
LINC00539-204ENST00000608957 PRO0461Q9UI25 63 aa7□□□□□ -1.29
LINC00539-204ENST00000608957 IGLV7-43P04211 117 aa6.99□□□□□ -1.29
LINC00539-204ENST00000608957 F8W1H4 67 aa6.98□□□□□ -1.29
LINC00539-204ENST00000608957 FAM19A1Q7Z5A9 133 aa6.98□□□□□ -1.29
LINC00539-204ENST00000608957 H3BT86 120 aa6.97□□□□□ -1.29
LINC00539-204ENST00000608957 BCE1O60756 84 aa6.97□□□□□ -1.29
LINC00539-204ENST00000608957 SMCPP49901 116 aaPredicted RBP6.97□□□□□ -1.29
LINC00539-204ENST00000608957 DHRS4-AS1Q9P1J3 65 aa6.97□□□□□ -1.29
LINC00539-204ENST00000608957 PRLHP81277 87 aa6.96□□□□□ -1.3
LINC00539-204ENST00000608957 ANKRD29Q8N6D5 301 aa6.96□□□□□ -1.3
LINC00539-204ENST00000608957 Q9BRP9 147 aa6.96□□□□□ -1.3
LINC00539-204ENST00000608957 ORMDL1Q9P0S3 153 aa6.96□□□□□ -1.3
LINC00539-204ENST00000608957 H0Y9J4 135 aa6.95□□□□□ -1.3
LINC00539-204ENST00000608957 UBE2AP49459 152 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms