RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 PRLHP81277 87 aa11.7□□□□□ -0.54
UPF1-209ENST00000600310 OR13C6PQ8NH95 151 aa11.69□□□□□ -0.54
UPF1-209ENST00000600310 CBY1Q9Y3M2 126 aa11.69□□□□□ -0.54
UPF1-209ENST00000600310 TRAV23DV6A0A075B6W5 121 aa11.68□□□□□ -0.54
UPF1-209ENST00000600310 C2orf91Q6ZV80 131 aa11.68□□□□□ -0.54
UPF1-209ENST00000600310 HIST1H4GQ99525 98 aa11.68□□□□□ -0.54
UPF1-209ENST00000600310 ETDCA0A1B0GVM5 59 aa11.66□□□□□ -0.54
UPF1-209ENST00000600310 A4D1N5 150 aa11.65□□□□□ -0.54
UPF1-209ENST00000600310 LINC01600Q96MT4 127 aa11.65□□□□□ -0.54
UPF1-209ENST00000600310 ZNF73O43830 326 aaPredicted RBP11.64□□□□□ -0.55
UPF1-209ENST00000600310 TRAV13-2A0A0B4J235 113 aa11.63□□□□□ -0.55
UPF1-209ENST00000600310 LOC105371267A0A1B0GV96 52 aa11.63□□□□□ -0.55
UPF1-209ENST00000600310 B5MCH6 92 aa11.63□□□□□ -0.55
UPF1-209ENST00000600310 A6NDN8 102 aa11.62□□□□□ -0.55
UPF1-209ENST00000600310 J3QL48 77 aa11.62□□□□□ -0.55
UPF1-209ENST00000600310 KRTAP1-4P0C5Y4 121 aa11.62□□□□□ -0.55
UPF1-209ENST00000600310 SMIM6P0DI80 62 aa11.62□□□□□ -0.55
UPF1-209ENST00000600310 TAL2Q16559 108 aa11.61□□□□□ -0.55
UPF1-209ENST00000600310 HIGD2AQ9BW72 106 aa11.61□□□□□ -0.55
UPF1-209ENST00000600310 UQCR10Q9UDW1 63 aa11.61□□□□□ -0.55
UPF1-209ENST00000600310 Q6ZRX8 168 aa11.6□□□□□ -0.55
UPF1-209ENST00000600310 MT1HL1P0DM35 61 aa11.59□□□□□ -0.55
UPF1-209ENST00000600310 HINT1P49773 126 aaPredicted RBP11.59□□□□□ -0.55
UPF1-209ENST00000600310 LRP1Q07954 4544 aaKnown RBP11.58□□□□□ -0.56
UPF1-209ENST00000600310 C6orf99Q4VX62 202 aa11.57□□□□□ -0.56
UPF1-209ENST00000600310 SMCR5Q8TEV8 140 aa11.57□□□□□ -0.56
UPF1-209ENST00000600310 KRTAP10-8P60410 259 aa11.56□□□□□ -0.56
UPF1-209ENST00000600310 CEND1Q8N111 149 aa11.56□□□□□ -0.56
UPF1-209ENST00000600310 FAT3Q8TDW7 4589 aa11.56□□□□□ -0.56
UPF1-209ENST00000600310 Q9BRP9 147 aa11.56□□□□□ -0.56
UPF1-209ENST00000600310 C12orf57Q99622 126 aa11.55□□□□□ -0.56
UPF1-209ENST00000600310 SMIM11BQ8TCY0 68 aa11.54□□□□□ -0.56
UPF1-209ENST00000600310 TRBV7-6A0A0J9YX20 115 aa11.53□□□□□ -0.56
UPF1-209ENST00000600310 HSD52Q0P140 79 aa11.53□□□□□ -0.56
UPF1-209ENST00000600310 PRR26Q8N8Z3 221 aa11.53□□□□□ -0.56
UPF1-209ENST00000600310 CFC1BP0CG36 223 aa11.52□□□□□ -0.57
UPF1-209ENST00000600310 CFC1P0CG37 223 aa11.52□□□□□ -0.57
UPF1-209ENST00000600310 COX7BP24311 80 aa11.52□□□□□ -0.57
UPF1-209ENST00000600310 ELOF1P60002 83 aaKnown RBP11.52□□□□□ -0.57
UPF1-209ENST00000600310 ERC2-IT1O76042 136 aa11.51□□□□□ -0.57
UPF1-209ENST00000600310 RPL13AP40429 203 aaKnown RBP11.51□□□□□ -0.57
UPF1-209ENST00000600310 SPRR4Q96PI1 79 aa11.51□□□□□ -0.57
UPF1-209ENST00000600310 PRO1933Q9H354 126 aa11.51□□□□□ -0.57
UPF1-209ENST00000600310 ZNF706Q9Y5V0 76 aaPredicted RBP11.51□□□□□ -0.57
UPF1-209ENST00000600310 A0A0B4J2C4 111 aa11.5□□□□□ -0.57
UPF1-209ENST00000600310 TMEM238LA0A1B0GVL6 79 aa11.5□□□□□ -0.57
UPF1-209ENST00000600310 A6NJY4 79 aa11.5□□□□□ -0.57
UPF1-209ENST00000600310 FXYD2P54710 66 aa11.5□□□□□ -0.57
UPF1-209ENST00000600310 ANAPC11Q9NYG5 84 aa11.5□□□□□ -0.57
UPF1-209ENST00000600310 A0A1B0GWB2 263 aa11.49□□□□□ -0.57
UPF1-209ENST00000600310 FAM229BQ4G0N7 80 aa11.49□□□□□ -0.57
UPF1-209ENST00000600310 CRYGAP11844 174 aa11.48□□□□□ -0.57
UPF1-209ENST00000600310 RAB37Q96AX2 223 aa11.48□□□□□ -0.57
UPF1-209ENST00000600310 DHRS4-AS1Q9P1J3 65 aa11.48□□□□□ -0.57
UPF1-209ENST00000600310 A0A087X002 238 aa11.47□□□□□ -0.57
UPF1-209ENST00000600310 LINC00483Q53H64 154 aa11.44□□□□□ -0.58
UPF1-209ENST00000600310 VAMP3Q15836 100 aa11.43□□□□□ -0.58
UPF1-209ENST00000600310 GAGE2AQ6NT46 116 aa11.43□□□□□ -0.58
UPF1-209ENST00000600310 H7C2G1 150 aa11.42□□□□□ -0.58
UPF1-209ENST00000600310 PRO1854Q9UHT4 67 aa11.42□□□□□ -0.58
UPF1-209ENST00000600310 KRTAP13-2Q52LG2 175 aa11.41□□□□□ -0.58
UPF1-209ENST00000600310 ST20-AS1Q8NBB2 130 aa11.41□□□□□ -0.58
UPF1-209ENST00000600310 TYMSOSQ8TAI1 123 aa11.4□□□□□ -0.58
UPF1-209ENST00000600310 NHP2Q9NX24 153 aaKnown RBP11.4□□□□□ -0.58
UPF1-209ENST00000600310 TNXBP22105 4242 aa11.39□□□□□ -0.59
UPF1-209ENST00000600310 TSTD3H0UI37 97 aa11.39□□□□□ -0.59
UPF1-209ENST00000600310 BVES-AS1Q5T3Y7 98 aa11.39□□□□□ -0.59
UPF1-209ENST00000600310 CTAG1AP78358 180 aa11.37□□□□□ -0.59
UPF1-209ENST00000600310 LINC00575Q6W349 94 aa11.37□□□□□ -0.59
UPF1-209ENST00000600310 SLC25A20O43772 301 aa11.36□□□□□ -0.59
UPF1-209ENST00000600310 SPRR1BP22528 89 aa11.36□□□□□ -0.59
UPF1-209ENST00000600310 C3orf22Q8N5N4 141 aa11.36□□□□□ -0.59
UPF1-209ENST00000600310 K7ERJ3 54 aa11.35□□□□□ -0.59
UPF1-209ENST00000600310 Q1RN00 199 aa11.35□□□□□ -0.59
UPF1-209ENST00000600310 M0R143 59 aa11.33□□□□□ -0.6
UPF1-209ENST00000600310 HMCN2Q8NDA2 5059 aa11.31□□□□□ -0.6
UPF1-209ENST00000600310 IGLV5-48A0A075B6I7 105 aa11.31□□□□□ -0.6
UPF1-209ENST00000600310 hADV29S1A0JD25 119 aa11.31□□□□□ -0.6
UPF1-209ENST00000600310 H0YGX0 51 aa11.31□□□□□ -0.6
UPF1-209ENST00000600310 TEX49A0A1B0GTD5 131 aa11.3□□□□□ -0.6
UPF1-209ENST00000600310 DEFB105AQ8NG35 78 aa11.3□□□□□ -0.6
UPF1-209ENST00000600310 LINC01547P58512 204 aaPredicted RBP11.29□□□□□ -0.6
UPF1-209ENST00000600310 IGLV9-49A0A0B4J1Y8 123 aa11.28□□□□□ -0.6
UPF1-209ENST00000600310 TRIAP1O43715 76 aa11.28□□□□□ -0.6
UPF1-209ENST00000600310 TSPAN13O95857 204 aa11.27□□□□□ -0.61
UPF1-209ENST00000600310 MOBPQ13875 183 aa11.27□□□□□ -0.61
UPF1-209ENST00000600310 LINC00304Q8N9R0 145 aa11.27□□□□□ -0.61
UPF1-209ENST00000600310 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.26□□□□□ -0.61
UPF1-209ENST00000600310 Q6ZQY7 126 aa11.26□□□□□ -0.61
UPF1-209ENST00000600310 SSBP3-AS1Q7Z2R9 100 aa11.26□□□□□ -0.61
UPF1-209ENST00000600310 LAMTOR3Q9UHA4 124 aa11.26□□□□□ -0.61
UPF1-209ENST00000600310 Q8N377 158 aa11.25□□□□□ -0.61
UPF1-209ENST00000600310 FAM218AQ96MZ4 157 aa11.25□□□□□ -0.61
UPF1-209ENST00000600310 PSMB2P49721 201 aa11.24□□□□□ -0.61
UPF1-209ENST00000600310 Q8NBF4 154 aa11.24□□□□□ -0.61
UPF1-209ENST00000600310 SNCGO76070 127 aa11.23□□□□□ -0.61
UPF1-209ENST00000600310 SMIM29Q86T20 159 aa11.23□□□□□ -0.61
UPF1-209ENST00000600310 UBR4Q5T4S7 5183 aa11.23□□□□□ -0.61
UPF1-209ENST00000600310 A0A1B0GX51 115 aa11.22□□□□□ -0.61
UPF1-209ENST00000600310 C9orf153Q5TBE3 101 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms