RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FAM30AQ9NZY2 134 aa9.58□□□□□ -0.88
TRIM28-209ENST00000597423 TRBV20-1A0A075B6N2 111 aa9.57□□□□□ -0.88
TRIM28-209ENST00000597423 REG3GQ6UW15 175 aa9.57□□□□□ -0.88
TRIM28-209ENST00000597423 CIRBP-AS1Q8TBR5 109 aa9.56□□□□□ -0.88
TRIM28-209ENST00000597423 ETDCA0A1B0GVM5 59 aa9.55□□□□□ -0.88
TRIM28-209ENST00000597423 COX7BP24311 80 aa9.55□□□□□ -0.88
TRIM28-209ENST00000597423 DNAH11Q96DT5 4516 aa9.55□□□□□ -0.88
TRIM28-209ENST00000597423 SLC25A20O43772 301 aa9.54□□□□□ -0.88
TRIM28-209ENST00000597423 GTF2H5Q6ZYL4 71 aa9.54□□□□□ -0.88
TRIM28-209ENST00000597423 SCXQ7RTU7 201 aa9.54□□□□□ -0.88
TRIM28-209ENST00000597423 SPRR1AP35321 89 aa9.53□□□□□ -0.88
TRIM28-209ENST00000597423 ATXN8Q156A1 80 aa9.53□□□□□ -0.88
TRIM28-209ENST00000597423 SPCS1Q9Y6A9 102 aa9.53□□□□□ -0.88
TRIM28-209ENST00000597423 PKD1P98161 4303 aa9.52□□□□□ -0.88
TRIM28-209ENST00000597423 INAFM2P0DMQ5 153 aa9.52□□□□□ -0.89
TRIM28-209ENST00000597423 A0A1B0GX51 115 aa9.51□□□□□ -0.89
TRIM28-209ENST00000597423 ELOF1P60002 83 aaKnown RBP9.5□□□□□ -0.89
TRIM28-209ENST00000597423 BCE1O60756 84 aa9.49□□□□□ -0.89
TRIM28-209ENST00000597423 FAM19A1Q7Z5A9 133 aa9.49□□□□□ -0.89
TRIM28-209ENST00000597423 DHRS4-AS1Q9P1J3 65 aa9.49□□□□□ -0.89
TRIM28-209ENST00000597423 A0A1B0GV90 55 aa9.48□□□□□ -0.89
TRIM28-209ENST00000597423 B5MCH6 92 aa9.48□□□□□ -0.89
TRIM28-209ENST00000597423 K7EP34 96 aa9.48□□□□□ -0.89
TRIM28-209ENST00000597423 TCL1BO95988 128 aa9.48□□□□□ -0.89
TRIM28-209ENST00000597423 LINC00575Q6W349 94 aa9.48□□□□□ -0.89
TRIM28-209ENST00000597423 CLEC2BQ92478 149 aa9.48□□□□□ -0.89
TRIM28-209ENST00000597423 hADV29S1A0JD25 119 aa9.47□□□□□ -0.89
TRIM28-209ENST00000597423 KRTAP4-16G5E9R7 235 aaPredicted RBP9.47□□□□□ -0.89
TRIM28-209ENST00000597423 H0Y9J4 135 aa9.47□□□□□ -0.89
TRIM28-209ENST00000597423 LST1O00453 97 aa9.47□□□□□ -0.89
TRIM28-209ENST00000597423 DNAL4O96015 105 aa9.47□□□□□ -0.89
TRIM28-209ENST00000597423 GHRHP01286 108 aa9.47□□□□□ -0.89
TRIM28-209ENST00000597423 TRACP01848 142 aa9.47□□□□□ -0.89
TRIM28-209ENST00000597423 UBE2AP49459 152 aa9.47□□□□□ -0.89
TRIM28-209ENST00000597423 Q6ZRX8 168 aa9.47□□□□□ -0.89
TRIM28-209ENST00000597423 LINC00528Q8N1L1 170 aa9.47□□□□□ -0.89
TRIM28-209ENST00000597423 PSORS1C2Q9UIG4 136 aa9.46□□□□□ -0.9
TRIM28-209ENST00000597423 DNAH5Q8TE73 4624 aa9.45□□□□□ -0.9
TRIM28-209ENST00000597423 C1orf137Q5JT78 98 aa9.45□□□□□ -0.9
TRIM28-209ENST00000597423 KRTAP11-1Q8IUC1 163 aa9.45□□□□□ -0.9
TRIM28-209ENST00000597423 H3BQ85 93 aa9.44□□□□□ -0.9
TRIM28-209ENST00000597423 RYR3Q15413 4870 aa9.44□□□□□ -0.9
TRIM28-209ENST00000597423 H3BMG7 143 aa9.43□□□□□ -0.9
TRIM28-209ENST00000597423 XGP55808 180 aa9.43□□□□□ -0.9
TRIM28-209ENST00000597423 FAM218AQ96MZ4 157 aa9.43□□□□□ -0.9
TRIM28-209ENST00000597423 HAMPP81172 84 aa9.42□□□□□ -0.9
TRIM28-209ENST00000597423 UBE2V1Q13404 147 aa9.42□□□□□ -0.9
TRIM28-209ENST00000597423 OCIAD2Q56VL3 154 aa9.42□□□□□ -0.9
TRIM28-209ENST00000597423 DNAH8Q96JB1 4490 aa9.41□□□□□ -0.9
TRIM28-209ENST00000597423 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.41□□□□□ -0.9
TRIM28-209ENST00000597423 CDK2AP2O75956 126 aa9.4□□□□□ -0.9
TRIM28-209ENST00000597423 C9JAW5 83 aa9.39□□□□□ -0.91
TRIM28-209ENST00000597423 ZNF861PO60384 105 aa9.39□□□□□ -0.91
TRIM28-209ENST00000597423 IGLV7-43P04211 117 aa9.39□□□□□ -0.91
TRIM28-209ENST00000597423 PRLHP81277 87 aa9.39□□□□□ -0.91
TRIM28-209ENST00000597423 HIGD2AQ9BW72 106 aa9.39□□□□□ -0.91
TRIM28-209ENST00000597423 ORMDL1Q9P0S3 153 aa9.39□□□□□ -0.91
TRIM28-209ENST00000597423 SMCR5Q8TEV8 140 aa9.38□□□□□ -0.91
TRIM28-209ENST00000597423 Q9BRP9 147 aa9.38□□□□□ -0.91
TRIM28-209ENST00000597423 F8W1H4 67 aa9.37□□□□□ -0.91
TRIM28-209ENST00000597423 TMEM256-PLSCR3K7ERE1 68 aa9.36□□□□□ -0.91
TRIM28-209ENST00000597423 BAALC-AS2P0C853 105 aa9.36□□□□□ -0.91
TRIM28-209ENST00000597423 RPL37AP61513 92 aaKnown RBP9.36□□□□□ -0.91
TRIM28-209ENST00000597423 Q6ZQY7 126 aa9.36□□□□□ -0.91
TRIM28-209ENST00000597423 KRTAP13-1Q8IUC0 172 aa9.36□□□□□ -0.91
TRIM28-209ENST00000597423 PPDPFLQ8WWR9 84 aa9.35□□□□□ -0.91
TRIM28-209ENST00000597423 DYNC1H1Q14204 4646 aaKnown RBP9.34□□□□□ -0.91
TRIM28-209ENST00000597423 FAM229AH3BQW9 127 aa9.34□□□□□ -0.91
TRIM28-209ENST00000597423 H3BT86 120 aa9.34□□□□□ -0.91
TRIM28-209ENST00000597423 ZNF706Q9Y5V0 76 aaPredicted RBP9.34□□□□□ -0.91
TRIM28-209ENST00000597423 PKHD1P08F94 4074 aa9.34□□□□□ -0.91
TRIM28-209ENST00000597423 SMR3BP02814 79 aaPredicted RBP9.33□□□□□ -0.92
TRIM28-209ENST00000597423 LRP1BQ9NZR2 4599 aa9.33□□□□□ -0.92
TRIM28-209ENST00000597423 ERC2-IT1O76042 136 aa9.32□□□□□ -0.92
TRIM28-209ENST00000597423 ANKRD29Q8N6D5 301 aa9.32□□□□□ -0.92
TRIM28-209ENST00000597423 DEFB105AQ8NG35 78 aa9.32□□□□□ -0.92
TRIM28-209ENST00000597423 TEX49A0A1B0GTD5 131 aa9.31□□□□□ -0.92
TRIM28-209ENST00000597423 PLA2G1BP04054 148 aaKnown RBP9.31□□□□□ -0.92
TRIM28-209ENST00000597423 LINC01600Q96MT4 127 aa9.29□□□□□ -0.92
TRIM28-209ENST00000597423 PRO0461Q9UI25 63 aa9.29□□□□□ -0.92
TRIM28-209ENST00000597423 IGLV5-48A0A075B6I7 105 aa9.28□□□□□ -0.92
TRIM28-209ENST00000597423 MTURNQ8N3F0 131 aa9.28□□□□□ -0.92
TRIM28-209ENST00000597423 ST20-AS1Q8NBB2 130 aa9.28□□□□□ -0.92
TRIM28-209ENST00000597423 SPINK6Q6UWN8 80 aa9.27□□□□□ -0.93
TRIM28-209ENST00000597423 GAGE2AQ6NT46 116 aa9.26□□□□□ -0.93
TRIM28-209ENST00000597423 Q8N377 158 aa9.26□□□□□ -0.93
TRIM28-209ENST00000597423 LAMTOR3Q9UHA4 124 aa9.26□□□□□ -0.93
TRIM28-209ENST00000597423 SPRR4Q96PI1 79 aa9.25□□□□□ -0.93
TRIM28-209ENST00000597423 JMJD7-PLA2G4BH0Y9G9 81 aa9.24□□□□□ -0.93
TRIM28-209ENST00000597423 SPRR1BP22528 89 aa9.24□□□□□ -0.93
TRIM28-209ENST00000597423 SMCPP49901 116 aaPredicted RBP9.24□□□□□ -0.93
TRIM28-209ENST00000597423 F8WEM9 126 aa9.23□□□□□ -0.93
TRIM28-209ENST00000597423 NDUFV3P56181 108 aaKnown RBP9.23□□□□□ -0.93
TRIM28-209ENST00000597423 LINC01547P58512 204 aaPredicted RBP9.23□□□□□ -0.93
TRIM28-209ENST00000597423 LINC00483Q53H64 154 aa9.21□□□□□ -0.94
TRIM28-209ENST00000597423 TEN1Q86WV5 123 aa9.21□□□□□ -0.94
TRIM28-209ENST00000597423 RBM3P98179 157 aaKnown RBP9.2□□□□□ -0.94
TRIM28-209ENST00000597423 ETDBQ3ZM63 59 aa9.2□□□□□ -0.94
TRIM28-209ENST00000597423 APOBP04114 4563 aaKnown RBP9.19□□□□□ -0.94
TRIM28-209ENST00000597423 Q5VSD8 79 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms