RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 Q6ZVH6 145 aa7.37□□□□□ -1.23
SS18-225ENST00000585121 HIST1H4GQ99525 98 aa7.37□□□□□ -1.23
SS18-225ENST00000585121 TMEM126AQ9H061 195 aa7.37□□□□□ -1.23
SS18-225ENST00000585121 M0R378 163 aa7.36□□□□□ -1.23
SS18-225ENST00000585121 KRTAP13-1Q8IUC0 172 aa7.36□□□□□ -1.23
SS18-225ENST00000585121 CEND1Q8N111 149 aa7.35□□□□□ -1.23
SS18-225ENST00000585121 MIR7-3HGQ8N6C7 128 aa7.35□□□□□ -1.23
SS18-225ENST00000585121 TYMSOSQ8TAI1 123 aa7.35□□□□□ -1.23
SS18-225ENST00000585121 PRLHP81277 87 aa7.34□□□□□ -1.23
SS18-225ENST00000585121 BATFQ16520 125 aa7.33□□□□□ -1.24
SS18-225ENST00000585121 Q8NDZ9 215 aa7.33□□□□□ -1.24
SS18-225ENST00000585121 LITAFQ99732 161 aa7.33□□□□□ -1.24
SS18-225ENST00000585121 SPANXDQ9BXN6 97 aa7.33□□□□□ -1.24
SS18-225ENST00000585121 SPANXCQ9NY87 97 aa7.33□□□□□ -1.24
SS18-225ENST00000585121 A0A087X002 238 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 A6NDN8 102 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 FAM229BQ4G0N7 80 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 COL5A1-AS1Q5SY13 56 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 TMEM238LA0A1B0GVL6 79 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 A6NJY4 79 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 IFITM1P13164 125 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 PRR4Q16378 134 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 PPDPFQ9H3Y8 114 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 ANAPC11Q9NYG5 84 aa7.32□□□□□ -1.24
SS18-225ENST00000585121 NCR3O14931 201 aa7.31□□□□□ -1.24
SS18-225ENST00000585121 TSPAN13O95857 204 aa7.31□□□□□ -1.24
SS18-225ENST00000585121 ADAMTSL4-AS1Q5T5F5 129 aa7.31□□□□□ -1.24
SS18-225ENST00000585121 COPS9Q8WXC6 57 aa7.31□□□□□ -1.24
SS18-225ENST00000585121 HIGD2AQ9BW72 106 aa7.31□□□□□ -1.24
SS18-225ENST00000585121 PRYO14603 147 aa7.3□□□□□ -1.24
SS18-225ENST00000585121 FXYD2P54710 66 aa7.3□□□□□ -1.24
SS18-225ENST00000585121 RNF213Q63HN8 5207 aa7.29□□□□□ -1.24
SS18-225ENST00000585121 MUSTN1Q8IVN3 82 aa7.29□□□□□ -1.24
SS18-225ENST00000585121 ETDCA0A1B0GVM5 59 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 A0A1B0GWB2 263 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 KRTAP13-2Q52LG2 175 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 DAND5Q8N907 189 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 KCNQ1DNQ9H478 68 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 ZNF706Q9Y5V0 76 aaPredicted RBP7.27□□□□□ -1.25
SS18-225ENST00000585121 LOC107984156A0A0G2JMH3 177 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 ARL17AQ8IVW1 177 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 LINC00337Q8N6G1 96 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 LINC00304Q8N9R0 145 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 LINC00308Q8TCZ7 52 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 LPAP08519 4548 aa7.27□□□□□ -1.25
SS18-225ENST00000585121 TRBV10-3A0A0K0K1G6 114 aa7.26□□□□□ -1.25
SS18-225ENST00000585121 NHP2Q9NX24 153 aaKnown RBP7.26□□□□□ -1.25
SS18-225ENST00000585121 TRBV10-2A0A0K0K1G8 114 aa7.25□□□□□ -1.25
SS18-225ENST00000585121 A4D1N5 150 aa7.25□□□□□ -1.25
SS18-225ENST00000585121 TAX1BP3O14907 124 aa7.23□□□□□ -1.25
SS18-225ENST00000585121 CFC1BP0CG36 223 aa7.23□□□□□ -1.25
SS18-225ENST00000585121 CFC1P0CG37 223 aa7.23□□□□□ -1.25
SS18-225ENST00000585121 SPRR1AP35321 89 aa7.23□□□□□ -1.25
SS18-225ENST00000585121 S100A7L2Q5SY68 101 aa7.23□□□□□ -1.25
SS18-225ENST00000585121 SPRR4Q96PI1 79 aa7.23□□□□□ -1.25
SS18-225ENST00000585121 A0A0B4J2C4 111 aa7.22□□□□□ -1.25
SS18-225ENST00000585121 NDUFC2O95298 119 aa7.22□□□□□ -1.25
SS18-225ENST00000585121 SMCR5Q8TEV8 140 aa7.22□□□□□ -1.25
SS18-225ENST00000585121 NPC2P61916 151 aa7.22□□□□□ -1.25
SS18-225ENST00000585121 SOSTDC1Q6X4U4 206 aa7.22□□□□□ -1.25
SS18-225ENST00000585121 PRO1854Q9UHT4 67 aa7.22□□□□□ -1.25
SS18-225ENST00000585121 C9orf118A6NHY6 69 aa7.21□□□□□ -1.26
SS18-225ENST00000585121 EIF4EBP3O60516 100 aaPredicted RBP7.21□□□□□ -1.26
SS18-225ENST00000585121 C3orf22Q8N5N4 141 aa7.21□□□□□ -1.26
SS18-225ENST00000585121 RAB37Q96AX2 223 aa7.21□□□□□ -1.26
SS18-225ENST00000585121 CBY1Q9Y3M2 126 aa7.21□□□□□ -1.26
SS18-225ENST00000585121 KRTAP4-16G5E9R7 235 aaPredicted RBP7.2□□□□□ -1.26
SS18-225ENST00000585121 C4orf48Q5BLP8 95 aa7.2□□□□□ -1.26
SS18-225ENST00000585121 B5MCH6 92 aa7.19□□□□□ -1.26
SS18-225ENST00000585121 K7ERJ3 54 aa7.19□□□□□ -1.26
SS18-225ENST00000585121 SPAG11AQ6PDA7 123 aa7.19□□□□□ -1.26
SS18-225ENST00000585121 IGLV6-57P01721 117 aa7.18□□□□□ -1.26
SS18-225ENST00000585121 TRAV23DV6A0A075B6W5 121 aa7.17□□□□□ -1.26
SS18-225ENST00000585121 A0A1B0GV90 55 aa7.17□□□□□ -1.26
SS18-225ENST00000585121 TRAV13-2A0A0B4J235 113 aa7.17□□□□□ -1.26
SS18-225ENST00000585121 H3BUT2 72 aa7.17□□□□□ -1.26
SS18-225ENST00000585121 GAGE2AQ6NT46 116 aa7.17□□□□□ -1.26
SS18-225ENST00000585121 Q6ZRX8 168 aa7.16□□□□□ -1.26
SS18-225ENST00000585121 RETNLBQ9BQ08 111 aa7.16□□□□□ -1.26
SS18-225ENST00000585121 A0A1W2PPM0 123 aa7.15□□□□□ -1.27
SS18-225ENST00000585121 ZNF73O43830 326 aaPredicted RBP7.15□□□□□ -1.27
SS18-225ENST00000585121 LINC00483Q53H64 154 aa7.15□□□□□ -1.27
SS18-225ENST00000585121 OR13C6PQ8NH95 151 aa7.15□□□□□ -1.27
SS18-225ENST00000585121 Q8NBF4 154 aa7.14□□□□□ -1.27
SS18-225ENST00000585121 ERC2-IT1O76042 136 aa7.13□□□□□ -1.27
SS18-225ENST00000585121 FABP2P12104 132 aa7.13□□□□□ -1.27
SS18-225ENST00000585121 Q9BRP9 147 aa7.13□□□□□ -1.27
SS18-225ENST00000585121 IGLV7-46A0A075B6I9 117 aa7.12□□□□□ -1.27
SS18-225ENST00000585121 LYRM7Q5U5X0 104 aa7.12□□□□□ -1.27
SS18-225ENST00000585121 IGLV9-49A0A0B4J1Y8 123 aa7.11□□□□□ -1.27
SS18-225ENST00000585121 VAMP3Q15836 100 aa7.11□□□□□ -1.27
SS18-225ENST00000585121 Q1RN00 199 aa7.11□□□□□ -1.27
SS18-225ENST00000585121 SPINK1P00995 79 aa7.11□□□□□ -1.27
SS18-225ENST00000585121 COX6CP09669 75 aa7.11□□□□□ -1.27
SS18-225ENST00000585121 SSBP3-AS1Q7Z2R9 100 aa7.11□□□□□ -1.27
SS18-225ENST00000585121 NAA38Q9BRA0 125 aaKnown RBP7.11□□□□□ -1.27
SS18-225ENST00000585121 H7C2G1 150 aa7.1□□□□□ -1.27
SS18-225ENST00000585121 PSMB2P49721 201 aa7.1□□□□□ -1.27
SS18-225ENST00000585121 MOBPQ13875 183 aa7.1□□□□□ -1.27
SS18-225ENST00000585121 GTF2H5Q6ZYL4 71 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms