RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 A0A087WTM6 91 aa6.68□□□□□ -1.34
SS18-221ENST00000582448 VPS13BQ7Z7G8 4022 aa6.68□□□□□ -1.34
SS18-221ENST00000582448 K7EP34 96 aa6.67□□□□□ -1.34
SS18-221ENST00000582448 RPL13AP40429 203 aaKnown RBP6.67□□□□□ -1.34
SS18-221ENST00000582448 C15orf56Q8N910 161 aa6.67□□□□□ -1.34
SS18-221ENST00000582448 TRBV20-1A0A075B6N2 111 aa6.66□□□□□ -1.34
SS18-221ENST00000582448 IGKV2D-30A0A075B6S6 120 aa6.66□□□□□ -1.34
SS18-221ENST00000582448 SYCNQ0VAF6 134 aa6.66□□□□□ -1.34
SS18-221ENST00000582448 SOSTDC1Q6X4U4 206 aa6.66□□□□□ -1.34
SS18-221ENST00000582448 LINC00526Q96FQ7 95 aa6.66□□□□□ -1.34
SS18-221ENST00000582448 USP17L23D6RBM5 183 aa6.65□□□□□ -1.34
SS18-221ENST00000582448 C14orf177Q52M58 125 aa6.65□□□□□ -1.34
SS18-221ENST00000582448 C9orf116Q5BN46 136 aaPredicted RBP6.65□□□□□ -1.34
SS18-221ENST00000582448 C6orf48Q9UBA6 75 aa6.65□□□□□ -1.34
SS18-221ENST00000582448 MYCBP2O75592 4640 aa6.65□□□□□ -1.34
SS18-221ENST00000582448 NDUFC2O95298 119 aa6.64□□□□□ -1.35
SS18-221ENST00000582448 OR13C6PQ8NH95 151 aa6.64□□□□□ -1.35
SS18-221ENST00000582448 CARD19Q96LW7 228 aa6.64□□□□□ -1.35
SS18-221ENST00000582448 IGLV5-52A0A0A0MRZ9 124 aa6.63□□□□□ -1.35
SS18-221ENST00000582448 NDUFC2-KCTD14E9PQ53 114 aa6.63□□□□□ -1.35
SS18-221ENST00000582448 Q6ZRU5 148 aa6.63□□□□□ -1.35
SS18-221ENST00000582448 ATXN8Q156A1 80 aa6.61□□□□□ -1.35
SS18-221ENST00000582448 S100A7L2Q5SY68 101 aa6.61□□□□□ -1.35
SS18-221ENST00000582448 PKIGQ9Y2B9 76 aa6.61□□□□□ -1.35
SS18-221ENST00000582448 TMEM126AQ9H061 195 aa6.6□□□□□ -1.35
SS18-221ENST00000582448 CBY1Q9Y3M2 126 aa6.6□□□□□ -1.35
SS18-221ENST00000582448 IGKV2-28A0A075B6P5 120 aa6.59□□□□□ -1.35
SS18-221ENST00000582448 F8W1H4 67 aa6.59□□□□□ -1.35
SS18-221ENST00000582448 H3BMG7 143 aa6.59□□□□□ -1.35
SS18-221ENST00000582448 LECT2O14960 151 aa6.59□□□□□ -1.35
SS18-221ENST00000582448 IGKV2D-28P01615 120 aa6.59□□□□□ -1.35
SS18-221ENST00000582448 LINC00337Q8N6G1 96 aa6.59□□□□□ -1.35
SS18-221ENST00000582448 TRBV10-2A0A0K0K1G8 114 aa6.58□□□□□ -1.36
SS18-221ENST00000582448 H0YGX0 51 aa6.58□□□□□ -1.36
SS18-221ENST00000582448 SNCGO76070 127 aa6.58□□□□□ -1.36
SS18-221ENST00000582448 TCL1BO95988 128 aa6.58□□□□□ -1.36
SS18-221ENST00000582448 RPL28P46779 137 aaKnown RBP6.58□□□□□ -1.36
SS18-221ENST00000582448 RPL18AQ02543 176 aaKnown RBP6.58□□□□□ -1.36
SS18-221ENST00000582448 GAGE2EQ4V326 116 aa6.58□□□□□ -1.36
SS18-221ENST00000582448 SERTAD4-AS1Q5TG53 156 aa6.58□□□□□ -1.36
SS18-221ENST00000582448 XAGE1AQ9HD64 81 aa6.58□□□□□ -1.36
SS18-221ENST00000582448 GAGE2DQ9UEU5 116 aa6.58□□□□□ -1.36
SS18-221ENST00000582448 LOC107984640A0A0U1RRK4 108 aa6.57□□□□□ -1.36
SS18-221ENST00000582448 NCR3O14931 201 aa6.57□□□□□ -1.36
SS18-221ENST00000582448 TLX1NBP0CAT3 122 aa6.57□□□□□ -1.36
SS18-221ENST00000582448 SRRM2Q9UQ35 2752 aaKnown RBP6.57□□□□□ -1.36
SS18-221ENST00000582448 LRCOL1A6NCL2 159 aa6.56□□□□□ -1.36
SS18-221ENST00000582448 Q8N814 137 aa6.56□□□□□ -1.36
SS18-221ENST00000582448 NKAPP1Q8N9T2 125 aa6.56□□□□□ -1.36
SS18-221ENST00000582448 KRTAP2-2Q9BYT5 123 aa6.56□□□□□ -1.36
SS18-221ENST00000582448 M0R378 163 aa6.55□□□□□ -1.36
SS18-221ENST00000582448 CNBPP62633 177 aaKnown RBP6.55□□□□□ -1.36
SS18-221ENST00000582448 PRR3P79522 188 aaKnown RBP6.55□□□□□ -1.36
SS18-221ENST00000582448 Q6ZRP5 223 aa6.55□□□□□ -1.36
SS18-221ENST00000582448 SMIM11BQ8TCY0 68 aa6.55□□□□□ -1.36
SS18-221ENST00000582448 LST1O00453 97 aa6.54□□□□□ -1.36
SS18-221ENST00000582448 C9JAW5 83 aa6.53□□□□□ -1.36
SS18-221ENST00000582448 DNAL4O96015 105 aa6.53□□□□□ -1.36
SS18-221ENST00000582448 GAGE2BQ13066 116 aa6.53□□□□□ -1.36
SS18-221ENST00000582448 LINC01620Q4KN68 170 aa6.53□□□□□ -1.36
SS18-221ENST00000582448 CLEC2BQ92478 149 aa6.53□□□□□ -1.36
SS18-221ENST00000582448 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.52□□□□□ -1.37
SS18-221ENST00000582448 IGLV6-57P01721 117 aa6.52□□□□□ -1.37
SS18-221ENST00000582448 TRACP01848 142 aa6.52□□□□□ -1.37
SS18-221ENST00000582448 VPREB1P12018 145 aa6.52□□□□□ -1.37
SS18-221ENST00000582448 TRAV23DV6A0A075B6W5 121 aa6.51□□□□□ -1.37
SS18-221ENST00000582448 SLC25A20O43772 301 aa6.51□□□□□ -1.37
SS18-221ENST00000582448 WFDC2Q14508 124 aa6.51□□□□□ -1.37
SS18-221ENST00000582448 TRBV10-3A0A0K0K1G6 114 aa6.5□□□□□ -1.37
SS18-221ENST00000582448 C9orf129Q5T035 196 aaKnown RBP6.5□□□□□ -1.37
SS18-221ENST00000582448 UBR4Q5T4S7 5183 aa6.5□□□□□ -1.37
SS18-221ENST00000582448 A0A1B0GX51 115 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 H3BT86 120 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 J3QR89 54 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 K7ERU9 68 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 M0QXV9 152 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 C6orf99Q4VX62 202 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 ANKRD29Q8N6D5 301 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 Q8NDZ9 215 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 DIRC1Q969H9 104 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 LINC00474Q9P2X8 69 aa6.49□□□□□ -1.37
SS18-221ENST00000582448 DNAH8Q96JB1 4490 aa6.48□□□□□ -1.37
SS18-221ENST00000582448 IGLV5-37A0A075B6J1 123 aa6.48□□□□□ -1.37
SS18-221ENST00000582448 ZNF73O43830 326 aaPredicted RBP6.48□□□□□ -1.37
SS18-221ENST00000582448 OXTP01178 125 aa6.48□□□□□ -1.37
SS18-221ENST00000582448 SCXQ7RTU7 201 aa6.48□□□□□ -1.37
SS18-221ENST00000582448 MTURNQ8N3F0 131 aa6.48□□□□□ -1.37
SS18-221ENST00000582448 PRO0461Q9UI25 63 aa6.48□□□□□ -1.37
SS18-221ENST00000582448 TRBV7-6A0A0J9YX20 115 aa6.47□□□□□ -1.37
SS18-221ENST00000582448 COX7BP24311 80 aa6.47□□□□□ -1.37
SS18-221ENST00000582448 Q6ZSA8 131 aa6.47□□□□□ -1.37
SS18-221ENST00000582448 C9orf163Q8N9P6 203 aa6.47□□□□□ -1.37
SS18-221ENST00000582448 IGKV2-24A0A0C4DH68 120 aa6.46□□□□□ -1.38
SS18-221ENST00000582448 ETDBQ3ZM63 59 aa6.46□□□□□ -1.38
SS18-221ENST00000582448 FAM19A5Q7Z5A7 132 aaPredicted RBP6.46□□□□□ -1.38
SS18-221ENST00000582448 TEN1Q86WV5 123 aa6.46□□□□□ -1.38
SS18-221ENST00000582448 C7orf33Q8WU49 177 aa6.46□□□□□ -1.38
SS18-221ENST00000582448 LRP1Q07954 4544 aaKnown RBP6.46□□□□□ -1.38
SS18-221ENST00000582448 A0A087WYN8 130 aa6.45□□□□□ -1.38
SS18-221ENST00000582448 A0A096LNI7 61 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms