RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TRIAP1O43715 76 aa9.58□□□□□ -0.88
SS18-215ENST00000580642 UBE2BP63146 152 aa9.57□□□□□ -0.88
SS18-215ENST00000580642 C6orf99Q4VX62 202 aa9.57□□□□□ -0.88
SS18-215ENST00000580642 FAM30AQ9NZY2 134 aa9.57□□□□□ -0.88
SS18-215ENST00000580642 SCGB1C2P0DMR2 95 aa9.56□□□□□ -0.88
SS18-215ENST00000580642 PHF5AQ7RTV0 110 aaKnown RBP9.56□□□□□ -0.88
SS18-215ENST00000580642 CIRBP-AS1Q8TBR5 109 aa9.56□□□□□ -0.88
SS18-215ENST00000580642 A0A1B0GX51 115 aa9.55□□□□□ -0.88
SS18-215ENST00000580642 RPL37AP8A6NKH3 93 aa9.55□□□□□ -0.88
SS18-215ENST00000580642 SNCGO76070 127 aa9.55□□□□□ -0.88
SS18-215ENST00000580642 REG3GQ6UW15 175 aa9.55□□□□□ -0.88
SS18-215ENST00000580642 SCXQ7RTU7 201 aa9.55□□□□□ -0.88
SS18-215ENST00000580642 KRTAP4-16G5E9R7 235 aaPredicted RBP9.53□□□□□ -0.88
SS18-215ENST00000580642 INAFM2P0DMQ5 153 aa9.53□□□□□ -0.88
SS18-215ENST00000580642 ELOF1P60002 83 aaKnown RBP9.53□□□□□ -0.88
SS18-215ENST00000580642 H0Y9J4 135 aa9.52□□□□□ -0.89
SS18-215ENST00000580642 COX7BP24311 80 aa9.52□□□□□ -0.89
SS18-215ENST00000580642 ETDCA0A1B0GVM5 59 aa9.51□□□□□ -0.89
SS18-215ENST00000580642 NAA38Q9BRA0 125 aaKnown RBP9.51□□□□□ -0.89
SS18-215ENST00000580642 LRP1BQ9NZR2 4599 aa9.5□□□□□ -0.89
SS18-215ENST00000580642 DYNC1H1Q14204 4646 aaKnown RBP9.5□□□□□ -0.89
SS18-215ENST00000580642 BCE1O60756 84 aa9.5□□□□□ -0.89
SS18-215ENST00000580642 ATXN8Q156A1 80 aa9.5□□□□□ -0.89
SS18-215ENST00000580642 GTF2H5Q6ZYL4 71 aa9.5□□□□□ -0.89
SS18-215ENST00000580642 SPCS1Q9Y6A9 102 aa9.5□□□□□ -0.89
SS18-215ENST00000580642 B5MCH6 92 aa9.49□□□□□ -0.89
SS18-215ENST00000580642 LST1O00453 97 aa9.49□□□□□ -0.89
SS18-215ENST00000580642 SLC25A20O43772 301 aa9.49□□□□□ -0.89
SS18-215ENST00000580642 TRACP01848 142 aa9.49□□□□□ -0.89
SS18-215ENST00000580642 Q6ZRX8 168 aa9.49□□□□□ -0.89
SS18-215ENST00000580642 LINC00528Q8N1L1 170 aa9.49□□□□□ -0.89
SS18-215ENST00000580642 DHRS4-AS1Q9P1J3 65 aa9.49□□□□□ -0.89
SS18-215ENST00000580642 K7EP34 96 aa9.48□□□□□ -0.89
SS18-215ENST00000580642 LINC00575Q6W349 94 aa9.48□□□□□ -0.89
SS18-215ENST00000580642 PKHD1P08F94 4074 aa9.48□□□□□ -0.89
SS18-215ENST00000580642 TCL1BO95988 128 aa9.46□□□□□ -0.9
SS18-215ENST00000580642 GHRHP01286 108 aa9.46□□□□□ -0.9
SS18-215ENST00000580642 KRTAP11-1Q8IUC1 163 aa9.46□□□□□ -0.9
SS18-215ENST00000580642 hADV29S1A0JD25 119 aa9.45□□□□□ -0.9
SS18-215ENST00000580642 H3BQ85 93 aa9.45□□□□□ -0.9
SS18-215ENST00000580642 XGP55808 180 aa9.45□□□□□ -0.9
SS18-215ENST00000580642 PSORS1C2Q9UIG4 136 aa9.45□□□□□ -0.9
SS18-215ENST00000580642 A0A1B0GV90 55 aa9.44□□□□□ -0.9
SS18-215ENST00000580642 CDK2AP2O75956 126 aa9.44□□□□□ -0.9
SS18-215ENST00000580642 FAM19A1Q7Z5A9 133 aa9.44□□□□□ -0.9
SS18-215ENST00000580642 CLEC2BQ92478 149 aa9.44□□□□□ -0.9
SS18-215ENST00000580642 DNAL4O96015 105 aa9.43□□□□□ -0.9
SS18-215ENST00000580642 OCIAD2Q56VL3 154 aa9.43□□□□□ -0.9
SS18-215ENST00000580642 KRTAP13-1Q8IUC0 172 aa9.43□□□□□ -0.9
SS18-215ENST00000580642 FAM218AQ96MZ4 157 aa9.43□□□□□ -0.9
SS18-215ENST00000580642 UBE2AP49459 152 aa9.42□□□□□ -0.9
SS18-215ENST00000580642 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.42□□□□□ -0.9
SS18-215ENST00000580642 UBE2V1Q13404 147 aa9.41□□□□□ -0.9
SS18-215ENST00000580642 C1orf137Q5JT78 98 aa9.41□□□□□ -0.9
SS18-215ENST00000580642 H3BMG7 143 aa9.4□□□□□ -0.9
SS18-215ENST00000580642 ZNF861PO60384 105 aa9.39□□□□□ -0.91
SS18-215ENST00000580642 PPDPFLQ8WWR9 84 aa9.39□□□□□ -0.91
SS18-215ENST00000580642 Q9BRP9 147 aa9.39□□□□□ -0.91
SS18-215ENST00000580642 IGLV7-43P04211 117 aa9.38□□□□□ -0.91
SS18-215ENST00000580642 SMCR5Q8TEV8 140 aa9.38□□□□□ -0.91
SS18-215ENST00000580642 LINC01600Q96MT4 127 aa9.38□□□□□ -0.91
SS18-215ENST00000580642 APOBP04114 4563 aaKnown RBP9.37□□□□□ -0.91
SS18-215ENST00000580642 F8W1H4 67 aa9.37□□□□□ -0.91
SS18-215ENST00000580642 PRLHP81277 87 aa9.37□□□□□ -0.91
SS18-215ENST00000580642 H3BT86 120 aa9.36□□□□□ -0.91
SS18-215ENST00000580642 HAMPP81172 84 aa9.36□□□□□ -0.91
SS18-215ENST00000580642 ORMDL1Q9P0S3 153 aa9.36□□□□□ -0.91
SS18-215ENST00000580642 C9JAW5 83 aa9.35□□□□□ -0.91
SS18-215ENST00000580642 TMEM256-PLSCR3K7ERE1 68 aa9.35□□□□□ -0.91
SS18-215ENST00000580642 Q6ZQY7 126 aa9.35□□□□□ -0.91
SS18-215ENST00000580642 HIGD2AQ9BW72 106 aa9.35□□□□□ -0.91
SS18-215ENST00000580642 RPL37AP61513 92 aaKnown RBP9.34□□□□□ -0.91
SS18-215ENST00000580642 ZNF706Q9Y5V0 76 aaPredicted RBP9.34□□□□□ -0.91
SS18-215ENST00000580642 IGLV5-48A0A075B6I7 105 aa9.33□□□□□ -0.92
SS18-215ENST00000580642 BAALC-AS2P0C853 105 aa9.32□□□□□ -0.92
SS18-215ENST00000580642 PRO0461Q9UI25 63 aa9.32□□□□□ -0.92
SS18-215ENST00000580642 ANKRD29Q8N6D5 301 aa9.31□□□□□ -0.92
SS18-215ENST00000580642 TEX49A0A1B0GTD5 131 aa9.3□□□□□ -0.92
SS18-215ENST00000580642 FAM229AH3BQW9 127 aa9.3□□□□□ -0.92
SS18-215ENST00000580642 ERC2-IT1O76042 136 aa9.3□□□□□ -0.92
SS18-215ENST00000580642 SPRR1BP22528 89 aa9.3□□□□□ -0.92
SS18-215ENST00000580642 PLA2G1BP04054 148 aaKnown RBP9.29□□□□□ -0.92
SS18-215ENST00000580642 LINC01547P58512 204 aaPredicted RBP9.27□□□□□ -0.93
SS18-215ENST00000580642 SPINK6Q6UWN8 80 aa9.27□□□□□ -0.93
SS18-215ENST00000580642 EPPK1P58107 5090 aaKnown RBP9.27□□□□□ -0.93
SS18-215ENST00000580642 SMR3BP02814 79 aaPredicted RBP9.26□□□□□ -0.93
SS18-215ENST00000580642 LINC00483Q53H64 154 aa9.26□□□□□ -0.93
SS18-215ENST00000580642 Q8N377 158 aa9.26□□□□□ -0.93
SS18-215ENST00000580642 SPRR4Q96PI1 79 aa9.26□□□□□ -0.93
SS18-215ENST00000580642 SMCPP49901 116 aaPredicted RBP9.25□□□□□ -0.93
SS18-215ENST00000580642 ST20-AS1Q8NBB2 130 aa9.25□□□□□ -0.93
SS18-215ENST00000580642 RYR1P21817 5038 aa9.24□□□□□ -0.93
SS18-215ENST00000580642 JMJD7-PLA2G4BH0Y9G9 81 aa9.24□□□□□ -0.93
SS18-215ENST00000580642 KRTAP10-4P60372 401 aaPredicted RBP9.23□□□□□ -0.93
SS18-215ENST00000580642 DEFB105AQ8NG35 78 aa9.23□□□□□ -0.93
SS18-215ENST00000580642 C21orf62-AS1Q17RA5 79 aa9.22□□□□□ -0.93
SS18-215ENST00000580642 TEN1Q86WV5 123 aa9.22□□□□□ -0.93
SS18-215ENST00000580642 MTURNQ8N3F0 131 aa9.22□□□□□ -0.93
SS18-215ENST00000580642 NDUFV3P56181 108 aaKnown RBP9.21□□□□□ -0.94
SS18-215ENST00000580642 GAGE2AQ6NT46 116 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms