RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 LINC00308Q8TCZ7 52 aa8.64□□□□□ -1.03
SS18-212ENST00000579061 CBY1Q9Y3M2 126 aa8.64□□□□□ -1.03
SS18-212ENST00000579061 LPAP08519 4548 aa8.64□□□□□ -1.03
SS18-212ENST00000579061 SNRPEP62304 92 aaKnown RBP8.63□□□□□ -1.03
SS18-212ENST00000579061 C3orf22Q8N5N4 141 aa8.63□□□□□ -1.03
SS18-212ENST00000579061 SPANXCQ9NY87 97 aa8.63□□□□□ -1.03
SS18-212ENST00000579061 TRAV23DV6A0A075B6W5 121 aa8.62□□□□□ -1.03
SS18-212ENST00000579061 Q6ZRX8 168 aa8.62□□□□□ -1.03
SS18-212ENST00000579061 LINC00483Q53H64 154 aa8.61□□□□□ -1.03
SS18-212ENST00000579061 LCE2DQ5TA82 110 aaPredicted RBP8.61□□□□□ -1.03
SS18-212ENST00000579061 C5orf52A6NGY3 159 aa8.6□□□□□ -1.03
SS18-212ENST00000579061 JOSD1Q15040 202 aaPredicted RBP8.6□□□□□ -1.03
SS18-212ENST00000579061 SPAG11AQ6PDA7 123 aa8.6□□□□□ -1.03
SS18-212ENST00000579061 Q9BRP9 147 aa8.6□□□□□ -1.03
SS18-212ENST00000579061 TTTY13Q9BZ97 58 aa8.6□□□□□ -1.03
SS18-212ENST00000579061 ZNF73O43830 326 aaPredicted RBP8.59□□□□□ -1.03
SS18-212ENST00000579061 ANKRD39Q53RE8 183 aa8.59□□□□□ -1.03
SS18-212ENST00000579061 ERC2-IT1O76042 136 aa8.58□□□□□ -1.04
SS18-212ENST00000579061 LINC00518Q8N0U6 118 aa8.58□□□□□ -1.04
SS18-212ENST00000579061 HIST3H2BBQ8N257 126 aa8.58□□□□□ -1.04
SS18-212ENST00000579061 SPANXDQ9BXN6 97 aa8.58□□□□□ -1.04
SS18-212ENST00000579061 PPDPFQ9H3Y8 114 aa8.58□□□□□ -1.04
SS18-212ENST00000579061 HINT1P49773 126 aaPredicted RBP8.57□□□□□ -1.04
SS18-212ENST00000579061 SCGB1D4Q6XE38 83 aa8.57□□□□□ -1.04
SS18-212ENST00000579061 COPS9Q8WXC6 57 aa8.57□□□□□ -1.04
SS18-212ENST00000579061 GAGE2AQ6NT46 116 aa8.56□□□□□ -1.04
SS18-212ENST00000579061 Q6ZVH6 145 aa8.56□□□□□ -1.04
SS18-212ENST00000579061 ATOH7Q8N100 152 aa8.56□□□□□ -1.04
SS18-212ENST00000579061 OR13C6PQ8NH95 151 aa8.56□□□□□ -1.04
SS18-212ENST00000579061 IFITM1P13164 125 aa8.55□□□□□ -1.04
SS18-212ENST00000579061 HIST1H2BLQ99880 126 aa8.55□□□□□ -1.04
SS18-212ENST00000579061 C4orf48Q5BLP8 95 aa8.54□□□□□ -1.04
SS18-212ENST00000579061 SSBP3-AS1Q7Z2R9 100 aa8.53□□□□□ -1.04
SS18-212ENST00000579061 Q8NBF4 154 aa8.53□□□□□ -1.04
SS18-212ENST00000579061 PCP2Q8IVA1 136 aa8.52□□□□□ -1.05
SS18-212ENST00000579061 RETNLBQ9BQ08 111 aa8.52□□□□□ -1.05
SS18-212ENST00000579061 RNF213Q63HN8 5207 aa8.5□□□□□ -1.05
SS18-212ENST00000579061 SPINK1P00995 79 aa8.5□□□□□ -1.05
SS18-212ENST00000579061 DHRS4-AS1Q9P1J3 65 aa8.5□□□□□ -1.05
SS18-212ENST00000579061 IGLV9-49A0A0B4J1Y8 123 aa8.49□□□□□ -1.05
SS18-212ENST00000579061 MOBPQ13875 183 aa8.49□□□□□ -1.05
SS18-212ENST00000579061 IGLV7-46A0A075B6I9 117 aa8.48□□□□□ -1.05
SS18-212ENST00000579061 TRBV7-6A0A0J9YX20 115 aa8.48□□□□□ -1.05
SS18-212ENST00000579061 HSBP1L1C9JCN9 74 aa8.48□□□□□ -1.05
SS18-212ENST00000579061 COX7BP24311 80 aa8.48□□□□□ -1.05
SS18-212ENST00000579061 ELOF1P60002 83 aaKnown RBP8.48□□□□□ -1.05
SS18-212ENST00000579061 RPS29P62273 56 aaKnown RBP8.48□□□□□ -1.05
SS18-212ENST00000579061 TPRXLQ17RH7 258 aa8.48□□□□□ -1.05
SS18-212ENST00000579061 MUSTN1Q8IVN3 82 aa8.48□□□□□ -1.05
SS18-212ENST00000579061 SPRR1BP22528 89 aa8.47□□□□□ -1.05
SS18-212ENST00000579061 C6orf99Q4VX62 202 aa8.47□□□□□ -1.05
SS18-212ENST00000579061 FP248Q71RG6 208 aaPredicted RBP8.47□□□□□ -1.05
SS18-212ENST00000579061 SCGB1D1O95968 90 aa8.46□□□□□ -1.06
SS18-212ENST00000579061 ST20-AS1Q8NBB2 130 aa8.46□□□□□ -1.06
SS18-212ENST00000579061 SLC25A34Q6PIV7 304 aa8.45□□□□□ -1.06
SS18-212ENST00000579061 TRAV13-2A0A0B4J235 113 aa8.44□□□□□ -1.06
SS18-212ENST00000579061 A0A1B0GWB2 263 aa8.44□□□□□ -1.06
SS18-212ENST00000579061 A6NDN8 102 aa8.43□□□□□ -1.06
SS18-212ENST00000579061 C9orf153Q5TBE3 101 aa8.43□□□□□ -1.06
SS18-212ENST00000579061 LOC105371267A0A1B0GV96 52 aa8.42□□□□□ -1.06
SS18-212ENST00000579061 A4D1N5 150 aa8.41□□□□□ -1.06
SS18-212ENST00000579061 CDIP1Q9H305 208 aa8.41□□□□□ -1.06
SS18-212ENST00000579061 LAMTOR3Q9UHA4 124 aa8.4□□□□□ -1.06
SS18-212ENST00000579061 Q8N377 158 aa8.39□□□□□ -1.07
SS18-212ENST00000579061 SLC25A20O43772 301 aa8.38□□□□□ -1.07
SS18-212ENST00000579061 TAL2Q16559 108 aa8.38□□□□□ -1.07
SS18-212ENST00000579061 TEX49A0A1B0GTD5 131 aa8.37□□□□□ -1.07
SS18-212ENST00000579061 SMIM11BQ8TCY0 68 aa8.37□□□□□ -1.07
SS18-212ENST00000579061 NHP2Q9NX24 153 aaKnown RBP8.37□□□□□ -1.07
SS18-212ENST00000579061 SMIM6P0DI80 62 aa8.36□□□□□ -1.07
SS18-212ENST00000579061 IGLV5-48A0A075B6I7 105 aa8.35□□□□□ -1.07
SS18-212ENST00000579061 COX8AP10176 69 aa8.35□□□□□ -1.07
SS18-212ENST00000579061 KRTAP13-3Q3SY46 172 aa8.35□□□□□ -1.07
SS18-212ENST00000579061 PYY3Q5JQD4 70 aa8.35□□□□□ -1.07
SS18-212ENST00000579061 DLEU1O43261 78 aa8.34□□□□□ -1.07
SS18-212ENST00000579061 LINC01547P58512 204 aaPredicted RBP8.34□□□□□ -1.07
SS18-212ENST00000579061 DEFB105AQ8NG35 78 aa8.34□□□□□ -1.07
SS18-212ENST00000579061 VAMP8Q9BV40 100 aa8.34□□□□□ -1.07
SS18-212ENST00000579061 MUC17Q685J3 4493 aa8.33□□□□□ -1.08
SS18-212ENST00000579061 VAMP3Q15836 100 aa8.33□□□□□ -1.08
SS18-212ENST00000579061 CD164Q04900 197 aa8.32□□□□□ -1.08
SS18-212ENST00000579061 Q1RN00 199 aa8.32□□□□□ -1.08
SS18-212ENST00000579061 HIST1H4GQ99525 98 aa8.32□□□□□ -1.08
SS18-212ENST00000579061 LIMD2Q9BT23 127 aa8.32□□□□□ -1.08
SS18-212ENST00000579061 PRO1933Q9H354 126 aa8.32□□□□□ -1.08
SS18-212ENST00000579061 SMIM29Q86T20 159 aa8.31□□□□□ -1.08
SS18-212ENST00000579061 A0A0U1RQV1 116 aa8.3□□□□□ -1.08
SS18-212ENST00000579061 LINC00575Q6W349 94 aa8.29□□□□□ -1.08
SS18-212ENST00000579061 C12orf57Q99622 126 aa8.29□□□□□ -1.08
SS18-212ENST00000579061 PAM16Q9Y3D7 125 aa8.29□□□□□ -1.08
SS18-212ENST00000579061 MUC2Q02817 5179 aa8.28□□□□□ -1.08
SS18-212ENST00000579061 SPATA45Q537H7 98 aa8.28□□□□□ -1.08
SS18-212ENST00000579061 HIGD1BQ9P298 99 aa8.28□□□□□ -1.08
SS18-212ENST00000579061 HRCT1Q6UXD1 115 aa8.27□□□□□ -1.09
SS18-212ENST00000579061 C14orf144Q96I85 54 aa8.27□□□□□ -1.09
SS18-212ENST00000579061 hADV29S1A0JD25 119 aa8.26□□□□□ -1.09
SS18-212ENST00000579061 H7C2G1 150 aa8.26□□□□□ -1.09
SS18-212ENST00000579061 BVES-AS1Q5T3Y7 98 aa8.25□□□□□ -1.09
SS18-212ENST00000579061 Q5XG85 94 aa8.25□□□□□ -1.09
SS18-212ENST00000579061 ASB16-AS1Q495Z4 193 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms