RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 DNAH6Q9C0G6 4158 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 TRBV6-5A0A0K0K1A5 114 aa4.48□□□□□ -1.69
VPS53-217ENST00000575100 TRBV6-4A0A1B0GX49 114 aa4.48□□□□□ -1.69
VPS53-217ENST00000575100 SDHAF1A6NFY7 115 aa4.48□□□□□ -1.69
VPS53-217ENST00000575100 CFC1P0CG37 223 aa4.48□□□□□ -1.69
VPS53-217ENST00000575100 POLR2KP53803 58 aaKnown RBP4.48□□□□□ -1.69
VPS53-217ENST00000575100 DIRC1Q969H9 104 aa4.48□□□□□ -1.69
VPS53-217ENST00000575100 TTTY13Q9BZ97 58 aa4.48□□□□□ -1.69
VPS53-217ENST00000575100 A0A096LNJ9 63 aa4.47□□□□□ -1.69
VPS53-217ENST00000575100 A0A096LPF7 62 aa4.47□□□□□ -1.69
VPS53-217ENST00000575100 LY6G6CO95867 125 aa4.47□□□□□ -1.69
VPS53-217ENST00000575100 ATP5EP56381 51 aaPredicted RBP4.47□□□□□ -1.69
VPS53-217ENST00000575100 KRTAP15-1Q3LI76 137 aa4.47□□□□□ -1.69
VPS53-217ENST00000575100 C9orf129Q5T035 196 aaKnown RBP4.47□□□□□ -1.69
VPS53-217ENST00000575100 FAM19A2Q8N3H0 131 aa4.47□□□□□ -1.69
VPS53-217ENST00000575100 SMIM2Q9BVW6 85 aa4.47□□□□□ -1.69
VPS53-217ENST00000575100 FRAS1Q86XX4 4008 aa4.47□□□□□ -1.69
VPS53-217ENST00000575100 CCKP06307 115 aa4.47□□□□□ -1.69
VPS53-217ENST00000575100 PRO0255Q9UI72 69 aa4.47□□□□□ -1.69
VPS53-217ENST00000575100 TRBV7-3A0A075B6L6 115 aa4.46□□□□□ -1.7
VPS53-217ENST00000575100 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.46□□□□□ -1.7
VPS53-217ENST00000575100 TMEM223A0PJW6 202 aa4.46□□□□□ -1.7
VPS53-217ENST00000575100 UBE2D3P61077 147 aa4.46□□□□□ -1.7
VPS53-217ENST00000575100 UBE2D2P62837 147 aa4.46□□□□□ -1.7
VPS53-217ENST00000575100 RHOHQ15669 191 aa4.46□□□□□ -1.7
VPS53-217ENST00000575100 VPS13DQ5THJ4 4388 aa4.46□□□□□ -1.7
VPS53-217ENST00000575100 DEFB131BA0A096LNP1 70 aa4.45□□□□□ -1.7
VPS53-217ENST00000575100 IGHV1-24A0A0C4DH33 117 aa4.45□□□□□ -1.7
VPS53-217ENST00000575100 TRBV10-1A0A0K0K1A3 114 aa4.45□□□□□ -1.7
VPS53-217ENST00000575100 LINC01546A6NGU7 62 aa4.45□□□□□ -1.7
VPS53-217ENST00000575100 LCE4AQ5TA78 99 aa4.45□□□□□ -1.7
VPS53-217ENST00000575100 LINC00474Q9P2X8 69 aa4.45□□□□□ -1.7
VPS53-217ENST00000575100 FUSP35637 526 aaKnown RBP eCLIP4.45□□□□□ -1.7
VPS53-217ENST00000575100 RBM3P98179 157 aaKnown RBP4.45□□□□□ -1.7
VPS53-217ENST00000575100 CIRBPQ14011 172 aaKnown RBP4.45□□□□□ -1.7
VPS53-217ENST00000575100 I3L3M4 83 aa4.44□□□□□ -1.7
VPS53-217ENST00000575100 PPP1R17O96001 155 aa4.44□□□□□ -1.7
VPS53-217ENST00000575100 RPL39P62891 51 aaKnown RBP4.44□□□□□ -1.7
VPS53-217ENST00000575100 RPL36AP83881 106 aaKnown RBP4.44□□□□□ -1.7
VPS53-217ENST00000575100 KMT2AQ03164 3969 aa4.44□□□□□ -1.7
VPS53-217ENST00000575100 PCLOQ9Y6V0 5065 aa4.44□□□□□ -1.7
VPS53-217ENST00000575100 HECTD4Q9Y4D8 3996 aa4.44□□□□□ -1.7
VPS53-217ENST00000575100 A6NED7 52 aa4.44□□□□□ -1.7
VPS53-217ENST00000575100 H7C423 109 aa4.44□□□□□ -1.7
VPS53-217ENST00000575100 LECT2O14960 151 aa4.44□□□□□ -1.7
VPS53-217ENST00000575100 CHCHD1Q96BP2 118 aaKnown RBP4.44□□□□□ -1.7
VPS53-217ENST00000575100 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.43□□□□□ -1.7
VPS53-217ENST00000575100 TRAV10A0A0B4J240 114 aa4.43□□□□□ -1.7
VPS53-217ENST00000575100 IGKV2-29A2NJV5 120 aaPredicted RBP4.43□□□□□ -1.7
VPS53-217ENST00000575100 IBA57-AS1B1ANH7 110 aa4.43□□□□□ -1.7
VPS53-217ENST00000575100 ACYP1P07311 99 aa4.43□□□□□ -1.7
VPS53-217ENST00000575100 KIAA1109Q2LD37 5005 aa4.43□□□□□ -1.7
VPS53-217ENST00000575100 NDUFAF8A1L188 74 aa4.42□□□□□ -1.7
VPS53-217ENST00000575100 SLC25A20O43772 301 aa4.42□□□□□ -1.7
VPS53-217ENST00000575100 FCER1GP30273 86 aa4.42□□□□□ -1.7
VPS53-217ENST00000575100 TMEM170BQ5T4T1 132 aa4.42□□□□□ -1.7
VPS53-217ENST00000575100 TRBV6-8A0A0A6YYG3 113 aa4.42□□□□□ -1.7
VPS53-217ENST00000575100 LINC00643Q86TS7 51 aa4.42□□□□□ -1.7
VPS53-217ENST00000575100 ICOSQ9Y6W8 199 aa4.42□□□□□ -1.7
VPS53-217ENST00000575100 DNAH17Q9UFH2 4485 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 A6NN06 94 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 H3BNG1 76 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 ESRGQ1W209 222 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 S100A7L2Q5SY68 101 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 LYPD5Q6UWN5 251 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 ATP11AUNQ6ZP68 121 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 MIR7-3HGQ8N6C7 128 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 UBE2WQ96B02 151 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 SCGB3A1Q96QR1 104 aa4.41□□□□□ -1.7
VPS53-217ENST00000575100 DYNC1H1Q14204 4646 aaKnown RBP4.4□□□□□ -1.7
VPS53-217ENST00000575100 IGIPA6NJ69 53 aa4.4□□□□□ -1.7
VPS53-217ENST00000575100 K7EMI3 77 aa4.4□□□□□ -1.7
VPS53-217ENST00000575100 LEPROTL1O95214 131 aa4.4□□□□□ -1.7
VPS53-217ENST00000575100 FXYD2P54710 66 aa4.4□□□□□ -1.7
VPS53-217ENST00000575100 SOSTDC1Q6X4U4 206 aa4.4□□□□□ -1.7
VPS53-217ENST00000575100 SMCR5Q8TEV8 140 aa4.4□□□□□ -1.71
VPS53-217ENST00000575100 UBE2D4Q9Y2X8 147 aa4.4□□□□□ -1.71
VPS53-217ENST00000575100 FAM168BA1KXE4 195 aa4.39□□□□□ -1.71
VPS53-217ENST00000575100 WFDC10BQ8IUB3 73 aa4.39□□□□□ -1.71
VPS53-217ENST00000575100 TYMSOSQ8TAI1 123 aa4.39□□□□□ -1.71
VPS53-217ENST00000575100 NHP2Q9NX24 153 aaKnown RBP4.39□□□□□ -1.71
VPS53-217ENST00000575100 DNAH11Q96DT5 4516 aa4.39□□□□□ -1.71
VPS53-217ENST00000575100 IGLV4-60A0A075B6I1 120 aa4.38□□□□□ -1.71
VPS53-217ENST00000575100 TRBV25-1A0A075B6N4 114 aa4.38□□□□□ -1.71
VPS53-217ENST00000575100 A0A1B0GVY2 172 aa4.38□□□□□ -1.71
VPS53-217ENST00000575100 APLNQ9ULZ1 77 aa4.38□□□□□ -1.71
VPS53-217ENST00000575100 MIAQ16674 131 aa4.38□□□□□ -1.71
VPS53-217ENST00000575100 SDIM1Q6ZPB5 146 aa4.38□□□□□ -1.71
VPS53-217ENST00000575100 IFI27L1Q96BM0 104 aa4.38□□□□□ -1.71
VPS53-217ENST00000575100 FAT2Q9NYQ8 4349 aa4.38□□□□□ -1.71
VPS53-217ENST00000575100 RYR1P21817 5038 aa4.37□□□□□ -1.71
VPS53-217ENST00000575100 A8MUU9 505 aa4.37□□□□□ -1.71
VPS53-217ENST00000575100 H7BZZ5 65 aa4.37□□□□□ -1.71
VPS53-217ENST00000575100 IGKV2-30P06310 120 aa4.37□□□□□ -1.71
VPS53-217ENST00000575100 Q1T7F1 81 aa4.37□□□□□ -1.71
VPS53-217ENST00000575100 LELP1Q5T871 98 aa4.37□□□□□ -1.71
VPS53-217ENST00000575100 CLEC2BQ92478 149 aa4.37□□□□□ -1.71
VPS53-217ENST00000575100 LCE5AQ5TCM9 118 aa4.36□□□□□ -1.71
VPS53-217ENST00000575100 CDC42SE2Q9NRR3 84 aa4.36□□□□□ -1.71
VPS53-217ENST00000575100 CLPSL2Q6UWE3 100 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms