RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 NCR3O14931 201 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 ADCYAP1P18509 176 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 LINC00158P58513 81 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 KRTAP10-12P60413 245 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 S100A12P80511 92 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 PMVKQ15126 192 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 KRTAP6-3Q3LI67 103 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 SFTA2Q6UW10 78 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 ALKAL2Q6UX46 152 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 NOTCH2NLQ7Z3S9 236 aa3.03□□□□□ -1.92
VPS53-208ENST00000570650 TRBV10-3A0A0K0K1G6 114 aa3.02□□□□□ -1.93
VPS53-208ENST00000570650 LINC01549A6NIU2 74 aa3.02□□□□□ -1.93
VPS53-208ENST00000570650 HRCT1Q6UXD1 115 aa3.02□□□□□ -1.93
VPS53-208ENST00000570650 BOD1L2Q8IYS8 172 aa3.02□□□□□ -1.93
VPS53-208ENST00000570650 Q9BRP9 147 aa3.02□□□□□ -1.93
VPS53-208ENST00000570650 A0A0U1RRA0 63 aa3.01□□□□□ -1.93
VPS53-208ENST00000570650 MT2AP02795 61 aa3.01□□□□□ -1.93
VPS53-208ENST00000570650 IGLC3P0DOY3 106 aa3.01□□□□□ -1.93
VPS53-208ENST00000570650 ZNF22P17026 224 aaPredicted RBP3.01□□□□□ -1.93
VPS53-208ENST00000570650 UBE2V1Q13404 147 aa3.01□□□□□ -1.93
VPS53-208ENST00000570650 Q6ZRX8 168 aa3.01□□□□□ -1.93
VPS53-208ENST00000570650 KIAA1644Q3SXP7 199 aa3□□□□□ -1.93
VPS53-208ENST00000570650 C20orf202A1L168 122 aa2.99□□□□□ -1.93
VPS53-208ENST00000570650 C9JQL5 133 aa2.99□□□□□ -1.93
VPS53-208ENST00000570650 ATP6V1G1O75348 118 aa2.99□□□□□ -1.93
VPS53-208ENST00000570650 JOSD1Q15040 202 aaPredicted RBP2.99□□□□□ -1.93
VPS53-208ENST00000570650 KRTAP19-6Q3LI70 58 aa2.99□□□□□ -1.93
VPS53-208ENST00000570650 TCTE3Q8IZS6 198 aa2.99□□□□□ -1.93
VPS53-208ENST00000570650 C5orf52A6NGY3 159 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 MT1FP04733 61 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 SMIM13P0DJ93 91 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 DDTP30046 118 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 CD164Q04900 197 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 MEIG1Q5JSS6 88 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 C1orf195Q5TG92 126 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 SLC25A34Q6PIV7 304 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 FA2HQ7L5A8 372 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 MIR7-3HGQ8N6C7 128 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 ST20-AS1Q8NBB2 130 aa2.98□□□□□ -1.93
VPS53-208ENST00000570650 LINC01546A6NGU7 62 aa2.97□□□□□ -1.93
VPS53-208ENST00000570650 NDUFA6P56556 154 aa2.97□□□□□ -1.93
VPS53-208ENST00000570650 PEA15Q15121 130 aa2.97□□□□□ -1.93
VPS53-208ENST00000570650 TMEM170BQ5T4T1 132 aa2.97□□□□□ -1.93
VPS53-208ENST00000570650 Q5XG85 94 aa2.97□□□□□ -1.93
VPS53-208ENST00000570650 CHTOPQ9Y3Y2 248 aaKnown RBP2.97□□□□□ -1.93
VPS53-208ENST00000570650 TRBV10-2A0A0K0K1G8 114 aa2.96□□□□□ -1.94
VPS53-208ENST00000570650 C11orf86A6NJI1 115 aa2.96□□□□□ -1.94
VPS53-208ENST00000570650 H7C2G1 150 aa2.96□□□□□ -1.94
VPS53-208ENST00000570650 SCGB1D1O95968 90 aa2.96□□□□□ -1.94
VPS53-208ENST00000570650 SPRR1BP22528 89 aa2.96□□□□□ -1.94
VPS53-208ENST00000570650 KRTAP10-10P60014 251 aa2.96□□□□□ -1.94
VPS53-208ENST00000570650 ATP11AUNQ6ZP68 121 aa2.96□□□□□ -1.94
VPS53-208ENST00000570650 LAMTOR3Q9UHA4 124 aa2.96□□□□□ -1.94
VPS53-208ENST00000570650 LINC00587B1AMM8 73 aa2.95□□□□□ -1.94
VPS53-208ENST00000570650 HERV-K104P63124 156 aa2.95□□□□□ -1.94
VPS53-208ENST00000570650 PRO1933Q9H354 126 aa2.95□□□□□ -1.94
VPS53-208ENST00000570650 SMCO4Q9NRQ5 59 aa2.95□□□□□ -1.94
VPS53-208ENST00000570650 TRBV20-1A0A075B6N2 111 aa2.94□□□□□ -1.94
VPS53-208ENST00000570650 TRAV23DV6A0A075B6W5 121 aa2.94□□□□□ -1.94
VPS53-208ENST00000570650 KRTAP20-1Q3LI63 56 aa2.94□□□□□ -1.94
VPS53-208ENST00000570650 S100A7L2Q5SY68 101 aa2.94□□□□□ -1.94
VPS53-208ENST00000570650 MAP1LC3CQ9BXW4 147 aa2.94□□□□□ -1.94
VPS53-208ENST00000570650 SPANXB1Q9NS25 103 aaPredicted RBP2.94□□□□□ -1.94
VPS53-208ENST00000570650 LOC107984156A0A0G2JMH3 177 aa2.93□□□□□ -1.94
VPS53-208ENST00000570650 TMEM223A0PJW6 202 aa2.93□□□□□ -1.94
VPS53-208ENST00000570650 ZNF73O43830 326 aaPredicted RBP2.93□□□□□ -1.94
VPS53-208ENST00000570650 MT-ND4LP03901 98 aa2.93□□□□□ -1.94
VPS53-208ENST00000570650 HINT1P49773 126 aaPredicted RBP2.93□□□□□ -1.94
VPS53-208ENST00000570650 C10orf91Q5T1B1 145 aa2.93□□□□□ -1.94
VPS53-208ENST00000570650 BAGE3Q86Y29 109 aa2.93□□□□□ -1.94
VPS53-208ENST00000570650 ARL17AQ8IVW1 177 aa2.93□□□□□ -1.94
VPS53-208ENST00000570650 PRAC1Q96KF2 57 aa2.93□□□□□ -1.94
VPS53-208ENST00000570650 NEBP20929 6669 aa2.93□□□□□ -1.94
VPS53-208ENST00000570650 KRTAP16-1A8MUX0 517 aa2.92□□□□□ -1.94
VPS53-208ENST00000570650 AKR1D1P51857 326 aa2.92□□□□□ -1.94
VPS53-208ENST00000570650 SNRPEP62304 92 aaKnown RBP2.92□□□□□ -1.94
VPS53-208ENST00000570650 Q1RN00 199 aa2.92□□□□□ -1.94
VPS53-208ENST00000570650 ADAMTSL4-AS1Q5T5F5 129 aa2.92□□□□□ -1.94
VPS53-208ENST00000570650 A0A096LNJ9 63 aa2.91□□□□□ -1.94
VPS53-208ENST00000570650 MYMXA0A1B0GTQ4 84 aa2.91□□□□□ -1.94
VPS53-208ENST00000570650 NDUFC2O95298 119 aa2.91□□□□□ -1.94
VPS53-208ENST00000570650 TCL1BO95988 128 aa2.91□□□□□ -1.94
VPS53-208ENST00000570650 HBDP02042 147 aa2.91□□□□□ -1.94
VPS53-208ENST00000570650 LCE3CQ5T5A8 94 aa2.91□□□□□ -1.94
VPS53-208ENST00000570650 MIEN1Q9BRT3 115 aa2.91□□□□□ -1.94
VPS53-208ENST00000570650 DHRS4-AS1Q9P1J3 65 aa2.91□□□□□ -1.94
VPS53-208ENST00000570650 CBY1Q9Y3M2 126 aa2.91□□□□□ -1.94
VPS53-208ENST00000570650 FAM236DA0A1B0GTK5 79 aa2.9□□□□□ -1.95
VPS53-208ENST00000570650 FAM236CP0DP71 79 aa2.9□□□□□ -1.95
VPS53-208ENST00000570650 LGALS3P17931 250 aaKnown RBP2.9□□□□□ -1.95
VPS53-208ENST00000570650 TAL2Q16559 108 aa2.9□□□□□ -1.95
VPS53-208ENST00000570650 C6orf99Q4VX62 202 aa2.9□□□□□ -1.95
VPS53-208ENST00000570650 COMMD7Q86VX2 200 aa2.9□□□□□ -1.95
VPS53-208ENST00000570650 PCP2Q8IVA1 136 aa2.9□□□□□ -1.95
VPS53-208ENST00000570650 C20orf166-AS1Q96NR2 134 aa2.9□□□□□ -1.95
VPS53-208ENST00000570650 A0A0G2JQZ4 141 aa2.89□□□□□ -1.95
VPS53-208ENST00000570650 TEX49A0A1B0GTD5 131 aa2.89□□□□□ -1.95
VPS53-208ENST00000570650 DEFB105AQ8NG35 78 aa2.89□□□□□ -1.95
VPS53-208ENST00000570650 OBSCN-AS1Q96MR7 158 aa2.89□□□□□ -1.95
VPS53-208ENST00000570650 PMCHL1Q16048 86 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms