RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 LINC00167Q96N53 147 aa5.27□□□□□ -1.57
SF3B3-212ENST00000568539 A4D1N5 150 aa5.26□□□□□ -1.57
SF3B3-212ENST00000568539 KRTAP11-1Q8IUC1 163 aa5.26□□□□□ -1.57
SF3B3-212ENST00000568539 IGLV1-50A0A075B6I6 118 aa5.25□□□□□ -1.57
SF3B3-212ENST00000568539 RPL37AP8A6NKH3 93 aa5.25□□□□□ -1.57
SF3B3-212ENST00000568539 SMR3BP02814 79 aaPredicted RBP5.25□□□□□ -1.57
SF3B3-212ENST00000568539 UBE2BP63146 152 aa5.25□□□□□ -1.57
SF3B3-212ENST00000568539 DNAH8Q96JB1 4490 aa5.25□□□□□ -1.57
SF3B3-212ENST00000568539 HMCN2Q8NDA2 5059 aa5.24□□□□□ -1.57
SF3B3-212ENST00000568539 TRBV10-3A0A0K0K1G6 114 aa5.24□□□□□ -1.57
SF3B3-212ENST00000568539 PCP4L1A6NKN8 68 aa5.24□□□□□ -1.57
SF3B3-212ENST00000568539 IGLV6-57P01721 117 aa5.24□□□□□ -1.57
SF3B3-212ENST00000568539 FXYD2P54710 66 aa5.24□□□□□ -1.57
SF3B3-212ENST00000568539 LINC00337Q8N6G1 96 aa5.24□□□□□ -1.57
SF3B3-212ENST00000568539 FAT1Q14517 4588 aa5.23□□□□□ -1.57
SF3B3-212ENST00000568539 DDTP30046 118 aa5.23□□□□□ -1.57
SF3B3-212ENST00000568539 S100A7L2Q5SY68 101 aa5.23□□□□□ -1.57
SF3B3-212ENST00000568539 TMEM126AQ9H061 195 aa5.23□□□□□ -1.57
SF3B3-212ENST00000568539 PSORS1C2Q9UIG4 136 aa5.23□□□□□ -1.57
SF3B3-212ENST00000568539 TRAV13-2A0A0B4J235 113 aa5.22□□□□□ -1.57
SF3B3-212ENST00000568539 A6NDN8 102 aa5.22□□□□□ -1.57
SF3B3-212ENST00000568539 CFC1BP0CG36 223 aa5.22□□□□□ -1.57
SF3B3-212ENST00000568539 CFC1P0CG37 223 aa5.22□□□□□ -1.57
SF3B3-212ENST00000568539 BVES-AS1Q5T3Y7 98 aa5.22□□□□□ -1.57
SF3B3-212ENST00000568539 OR13C6PQ8NH95 151 aa5.22□□□□□ -1.57
SF3B3-212ENST00000568539 KCNQ1DNQ9H478 68 aa5.22□□□□□ -1.57
SF3B3-212ENST00000568539 A0A0B4J2C4 111 aa5.21□□□□□ -1.58
SF3B3-212ENST00000568539 PRYO14603 147 aa5.21□□□□□ -1.58
SF3B3-212ENST00000568539 KRTAP10-4P60372 401 aaPredicted RBP5.21□□□□□ -1.58
SF3B3-212ENST00000568539 RPL37AP61513 92 aaKnown RBP5.21□□□□□ -1.58
SF3B3-212ENST00000568539 TRAV23DV6A0A075B6W5 121 aa5.2□□□□□ -1.58
SF3B3-212ENST00000568539 A0A1B0GWB2 263 aa5.2□□□□□ -1.58
SF3B3-212ENST00000568539 M0R143 59 aa5.2□□□□□ -1.58
SF3B3-212ENST00000568539 SPRR1AP35321 89 aa5.2□□□□□ -1.58
SF3B3-212ENST00000568539 HINT1P49773 126 aaPredicted RBP5.2□□□□□ -1.58
SF3B3-212ENST00000568539 Q5VSD8 79 aa5.2□□□□□ -1.58
SF3B3-212ENST00000568539 REG3GQ6UW15 175 aa5.2□□□□□ -1.58
SF3B3-212ENST00000568539 Q8N1X5 172 aa5.2□□□□□ -1.58
SF3B3-212ENST00000568539 NHP2Q9NX24 153 aaKnown RBP5.2□□□□□ -1.58
SF3B3-212ENST00000568539 KRTAP4-16G5E9R7 235 aaPredicted RBP5.19□□□□□ -1.58
SF3B3-212ENST00000568539 BCE1O60756 84 aa5.19□□□□□ -1.58
SF3B3-212ENST00000568539 RPL13AP40429 203 aaKnown RBP5.19□□□□□ -1.58
SF3B3-212ENST00000568539 C1orf137Q5JT78 98 aa5.19□□□□□ -1.58
SF3B3-212ENST00000568539 RAB37Q96AX2 223 aa5.19□□□□□ -1.58
SF3B3-212ENST00000568539 KRTAP3-1Q9BYR8 98 aa5.19□□□□□ -1.58
SF3B3-212ENST00000568539 K7ERJ3 54 aa5.18□□□□□ -1.58
SF3B3-212ENST00000568539 ZNF73O43830 326 aaPredicted RBP5.18□□□□□ -1.58
SF3B3-212ENST00000568539 SMIM11BQ8TCY0 68 aa5.18□□□□□ -1.58
SF3B3-212ENST00000568539 PRO1854Q9UHT4 67 aa5.18□□□□□ -1.58
SF3B3-212ENST00000568539 TRIAP1O43715 76 aa5.17□□□□□ -1.58
SF3B3-212ENST00000568539 IGLV7-43P04211 117 aa5.17□□□□□ -1.58
SF3B3-212ENST00000568539 PCP4P48539 62 aa5.17□□□□□ -1.58
SF3B3-212ENST00000568539 C6orf99Q4VX62 202 aa5.17□□□□□ -1.58
SF3B3-212ENST00000568539 KRTAP13-1Q8IUC0 172 aa5.17□□□□□ -1.58
SF3B3-212ENST00000568539 DIRC1Q969H9 104 aa5.17□□□□□ -1.58
SF3B3-212ENST00000568539 ETDCA0A1B0GVM5 59 aa5.16□□□□□ -1.58
SF3B3-212ENST00000568539 H7C2G1 150 aa5.16□□□□□ -1.58
SF3B3-212ENST00000568539 RPL28P46779 137 aaKnown RBP5.16□□□□□ -1.58
SF3B3-212ENST00000568539 FAM19A1Q7Z5A9 133 aa5.16□□□□□ -1.58
SF3B3-212ENST00000568539 TRBV7-6A0A0J9YX20 115 aa5.15□□□□□ -1.59
SF3B3-212ENST00000568539 H0Y9J4 135 aa5.15□□□□□ -1.59
SF3B3-212ENST00000568539 ZNF861PO60384 105 aa5.15□□□□□ -1.59
SF3B3-212ENST00000568539 UBE2AP49459 152 aa5.15□□□□□ -1.59
SF3B3-212ENST00000568539 PRLHP81277 87 aa5.15□□□□□ -1.59
SF3B3-212ENST00000568539 BATFQ16520 125 aa5.15□□□□□ -1.59
SF3B3-212ENST00000568539 LCE3BQ5TA77 95 aa5.15□□□□□ -1.59
SF3B3-212ENST00000568539 SRRM2Q9UQ35 2752 aaKnown RBP5.14□□□□□ -1.59
SF3B3-212ENST00000568539 TSPAN13O95857 204 aa5.14□□□□□ -1.59
SF3B3-212ENST00000568539 ELOF1P60002 83 aaKnown RBP5.14□□□□□ -1.59
SF3B3-212ENST00000568539 Q1RN00 199 aa5.14□□□□□ -1.59
SF3B3-212ENST00000568539 Q6ZRX8 168 aa5.14□□□□□ -1.59
SF3B3-212ENST00000568539 SNHG12Q9BXW3 62 aa5.14□□□□□ -1.59
SF3B3-212ENST00000568539 COX7BP24311 80 aa5.13□□□□□ -1.59
SF3B3-212ENST00000568539 SMCR5Q8TEV8 140 aa5.13□□□□□ -1.59
SF3B3-212ENST00000568539 Q9BRP9 147 aa5.13□□□□□ -1.59
SF3B3-212ENST00000568539 VPS13BQ7Z7G8 4022 aa5.12□□□□□ -1.59
SF3B3-212ENST00000568539 VAMP3Q15836 100 aa5.12□□□□□ -1.59
SF3B3-212ENST00000568539 SPINK6Q6UWN8 80 aa5.12□□□□□ -1.59
SF3B3-212ENST00000568539 HIGD2AQ9BW72 106 aa5.12□□□□□ -1.59
SF3B3-212ENST00000568539 H0YGX0 51 aa5.1□□□□□ -1.59
SF3B3-212ENST00000568539 ERC2-IT1O76042 136 aa5.1□□□□□ -1.59
SF3B3-212ENST00000568539 INAFM2P0DMQ5 153 aa5.1□□□□□ -1.59
SF3B3-212ENST00000568539 PSMB2P49721 201 aa5.1□□□□□ -1.59
SF3B3-212ENST00000568539 RNF213Q63HN8 5207 aa5.1□□□□□ -1.59
SF3B3-212ENST00000568539 LINC00575Q6W349 94 aa5.1□□□□□ -1.59
SF3B3-212ENST00000568539 DHRS4-AS1Q9P1J3 65 aa5.1□□□□□ -1.59
SF3B3-212ENST00000568539 TAX1BP3O14907 124 aa5.09□□□□□ -1.59
SF3B3-212ENST00000568539 KRTAP19-1Q8IUB9 90 aa5.09□□□□□ -1.59
SF3B3-212ENST00000568539 COX6CP09669 75 aa5.08□□□□□ -1.6
SF3B3-212ENST00000568539 COL5A1-AS1Q5SY13 56 aa5.08□□□□□ -1.6
SF3B3-212ENST00000568539 FAM218AQ96MZ4 157 aa5.08□□□□□ -1.6
SF3B3-212ENST00000568539 NAA38Q9BRA0 125 aaKnown RBP5.08□□□□□ -1.6
SF3B3-212ENST00000568539 hADV29S1A0JD25 119 aa5.07□□□□□ -1.6
SF3B3-212ENST00000568539 SLC25A20O43772 301 aa5.07□□□□□ -1.6
SF3B3-212ENST00000568539 SPRR4Q96PI1 79 aa5.07□□□□□ -1.6
SF3B3-212ENST00000568539 FLG2Q5D862 2391 aaPredicted RBP5.06□□□□□ -1.6
SF3B3-212ENST00000568539 KRTAP4-8A0A0G2JLE6 195 aa5.06□□□□□ -1.6
SF3B3-212ENST00000568539 H3BUT2 72 aa5.06□□□□□ -1.6
SF3B3-212ENST00000568539 KRTAP1-4P0C5Y4 121 aa5.06□□□□□ -1.6
SF3B3-212ENST00000568539 ST20-AS1Q8NBB2 130 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms