RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 NPC2P61916 151 aa10.87□□□□□ -0.67
CLN3-227ENST00000567495 SPANXCQ9NY87 97 aa10.87□□□□□ -0.67
CLN3-227ENST00000567495 EIF4EBP3O60516 100 aaPredicted RBP10.86□□□□□ -0.67
CLN3-227ENST00000567495 S100A1P23297 94 aa10.86□□□□□ -0.67
CLN3-227ENST00000567495 LINC00483Q53H64 154 aa10.86□□□□□ -0.67
CLN3-227ENST00000567495 C3orf22Q8N5N4 141 aa10.86□□□□□ -0.67
CLN3-227ENST00000567495 ZNF73O43830 326 aaPredicted RBP10.85□□□□□ -0.67
CLN3-227ENST00000567495 HINT1P49773 126 aaPredicted RBP10.84□□□□□ -0.67
CLN3-227ENST00000567495 C4orf48Q5BLP8 95 aa10.83□□□□□ -0.68
CLN3-227ENST00000567495 COPS9Q8WXC6 57 aa10.83□□□□□ -0.68
CLN3-227ENST00000567495 GAGE2AQ6NT46 116 aa10.82□□□□□ -0.68
CLN3-227ENST00000567495 SCGB1D4Q6XE38 83 aa10.82□□□□□ -0.68
CLN3-227ENST00000567495 LINC00518Q8N0U6 118 aa10.82□□□□□ -0.68
CLN3-227ENST00000567495 Q9BRP9 147 aa10.82□□□□□ -0.68
CLN3-227ENST00000567495 SPANXDQ9BXN6 97 aa10.82□□□□□ -0.68
CLN3-227ENST00000567495 PPDPFQ9H3Y8 114 aa10.82□□□□□ -0.68
CLN3-227ENST00000567495 LPAP08519 4548 aa10.81□□□□□ -0.68
CLN3-227ENST00000567495 TTTY13Q9BZ97 58 aa10.81□□□□□ -0.68
CLN3-227ENST00000567495 C5orf52A6NGY3 159 aa10.8□□□□□ -0.68
CLN3-227ENST00000567495 ERC2-IT1O76042 136 aa10.8□□□□□ -0.68
CLN3-227ENST00000567495 SNRPEP62304 92 aaKnown RBP10.8□□□□□ -0.68
CLN3-227ENST00000567495 OR13C6PQ8NH95 151 aa10.8□□□□□ -0.68
CLN3-227ENST00000567495 Q6ZVH6 145 aa10.79□□□□□ -0.68
CLN3-227ENST00000567495 RNF213Q63HN8 5207 aa10.78□□□□□ -0.68
CLN3-227ENST00000567495 ANKRD39Q53RE8 183 aa10.78□□□□□ -0.68
CLN3-227ENST00000567495 Q8NBF4 154 aa10.78□□□□□ -0.68
CLN3-227ENST00000567495 IFITM1P13164 125 aa10.77□□□□□ -0.69
CLN3-227ENST00000567495 S100A2P29034 98 aa10.77□□□□□ -0.69
CLN3-227ENST00000567495 ATOH7Q8N100 152 aa10.77□□□□□ -0.69
CLN3-227ENST00000567495 SSBP3-AS1Q7Z2R9 100 aa10.76□□□□□ -0.69
CLN3-227ENST00000567495 SPINK1P00995 79 aa10.75□□□□□ -0.69
CLN3-227ENST00000567495 HIST3H2BBQ8N257 126 aa10.75□□□□□ -0.69
CLN3-227ENST00000567495 RETNLBQ9BQ08 111 aa10.75□□□□□ -0.69
CLN3-227ENST00000567495 HIST1H2BLQ99880 126 aa10.74□□□□□ -0.69
CLN3-227ENST00000567495 DHRS4-AS1Q9P1J3 65 aa10.74□□□□□ -0.69
CLN3-227ENST00000567495 IGLV7-46A0A075B6I9 117 aa10.73□□□□□ -0.69
CLN3-227ENST00000567495 S100A6P06703 90 aa10.72□□□□□ -0.69
CLN3-227ENST00000567495 MOBPQ13875 183 aa10.72□□□□□ -0.69
CLN3-227ENST00000567495 PCP2Q8IVA1 136 aa10.72□□□□□ -0.69
CLN3-227ENST00000567495 IGLV9-49A0A0B4J1Y8 123 aa10.71□□□□□ -0.69
CLN3-227ENST00000567495 TPRXLQ17RH7 258 aa10.71□□□□□ -0.69
CLN3-227ENST00000567495 FP248Q71RG6 208 aaPredicted RBP10.71□□□□□ -0.69
CLN3-227ENST00000567495 HSBP1L1C9JCN9 74 aa10.7□□□□□ -0.7
CLN3-227ENST00000567495 TRBV7-6A0A0J9YX20 115 aa10.69□□□□□ -0.7
CLN3-227ENST00000567495 RPS29P62273 56 aaKnown RBP10.69□□□□□ -0.7
CLN3-227ENST00000567495 SLC25A34Q6PIV7 304 aa10.69□□□□□ -0.7
CLN3-227ENST00000567495 COX7BP24311 80 aa10.68□□□□□ -0.7
CLN3-227ENST00000567495 ELOF1P60002 83 aaKnown RBP10.68□□□□□ -0.7
CLN3-227ENST00000567495 C6orf99Q4VX62 202 aa10.68□□□□□ -0.7
CLN3-227ENST00000567495 ST20-AS1Q8NBB2 130 aa10.67□□□□□ -0.7
CLN3-227ENST00000567495 SPRR1BP22528 89 aa10.66□□□□□ -0.7
CLN3-227ENST00000567495 MUSTN1Q8IVN3 82 aa10.66□□□□□ -0.7
CLN3-227ENST00000567495 CDIP1Q9H305 208 aa10.66□□□□□ -0.7
CLN3-227ENST00000567495 A6NDN8 102 aa10.65□□□□□ -0.7
CLN3-227ENST00000567495 C9orf153Q5TBE3 101 aa10.65□□□□□ -0.7
CLN3-227ENST00000567495 TRAV13-2A0A0B4J235 113 aa10.64□□□□□ -0.71
CLN3-227ENST00000567495 A0A1B0GWB2 263 aa10.63□□□□□ -0.71
CLN3-227ENST00000567495 A4D1N5 150 aa10.62□□□□□ -0.71
CLN3-227ENST00000567495 LAMTOR3Q9UHA4 124 aa10.62□□□□□ -0.71
CLN3-227ENST00000567495 SLC25A20O43772 301 aa10.61□□□□□ -0.71
CLN3-227ENST00000567495 TAL2Q16559 108 aa10.59□□□□□ -0.71
CLN3-227ENST00000567495 SCGB1D1O95968 90 aa10.58□□□□□ -0.72
CLN3-227ENST00000567495 Q8N377 158 aa10.58□□□□□ -0.72
CLN3-227ENST00000567495 TEX49A0A1B0GTD5 131 aa10.57□□□□□ -0.72
CLN3-227ENST00000567495 NHP2Q9NX24 153 aaKnown RBP10.57□□□□□ -0.72
CLN3-227ENST00000567495 A0A0U1RQV1 116 aa10.56□□□□□ -0.72
CLN3-227ENST00000567495 SMIM11BQ8TCY0 68 aa10.55□□□□□ -0.72
CLN3-227ENST00000567495 KRTAP13-3Q3SY46 172 aa10.54□□□□□ -0.72
CLN3-227ENST00000567495 DEFB105AQ8NG35 78 aa10.54□□□□□ -0.72
CLN3-227ENST00000567495 VAMP3Q15836 100 aa10.53□□□□□ -0.72
CLN3-227ENST00000567495 IGLV5-48A0A075B6I7 105 aa10.52□□□□□ -0.73
CLN3-227ENST00000567495 LIMD2Q9BT23 127 aa10.51□□□□□ -0.73
CLN3-227ENST00000567495 PRO1933Q9H354 126 aa10.51□□□□□ -0.73
CLN3-227ENST00000567495 COX8AP10176 69 aa10.5□□□□□ -0.73
CLN3-227ENST00000567495 CD164Q04900 197 aa10.5□□□□□ -0.73
CLN3-227ENST00000567495 Q1RN00 199 aa10.5□□□□□ -0.73
CLN3-227ENST00000567495 MUC2Q02817 5179 aa10.49□□□□□ -0.73
CLN3-227ENST00000567495 DLEU1O43261 78 aa10.49□□□□□ -0.73
CLN3-227ENST00000567495 HIST1H4GQ99525 98 aa10.48□□□□□ -0.73
CLN3-227ENST00000567495 LINC01547P58512 204 aaPredicted RBP10.46□□□□□ -0.73
CLN3-227ENST00000567495 SMIM29Q86T20 159 aa10.46□□□□□ -0.73
CLN3-227ENST00000567495 LINC00575Q6W349 94 aa10.44□□□□□ -0.74
CLN3-227ENST00000567495 H7C2G1 150 aa10.43□□□□□ -0.74
CLN3-227ENST00000567495 HRCT1Q6UXD1 115 aa10.43□□□□□ -0.74
CLN3-227ENST00000567495 hADV29S1A0JD25 119 aa10.41□□□□□ -0.74
CLN3-227ENST00000567495 Q5XG85 94 aa10.41□□□□□ -0.74
CLN3-227ENST00000567495 SEC61BP60468 96 aaKnown RBP10.4□□□□□ -0.74
CLN3-227ENST00000567495 ASB16-AS1Q495Z4 193 aa10.4□□□□□ -0.74
CLN3-227ENST00000567495 BVES-AS1Q5T3Y7 98 aa10.4□□□□□ -0.74
CLN3-227ENST00000567495 HIGD1BQ9P298 99 aa10.4□□□□□ -0.74
CLN3-227ENST00000567495 F8WEM9 126 aa10.39□□□□□ -0.75
CLN3-227ENST00000567495 SPATA45Q537H7 98 aa10.39□□□□□ -0.75
CLN3-227ENST00000567495 C14orf144Q96I85 54 aa10.39□□□□□ -0.75
CLN3-227ENST00000567495 VAMP8Q9BV40 100 aa10.39□□□□□ -0.75
CLN3-227ENST00000567495 PAM16Q9Y3D7 125 aa10.39□□□□□ -0.75
CLN3-227ENST00000567495 C12orf57Q99622 126 aa10.38□□□□□ -0.75
CLN3-227ENST00000567495 MUC17Q685J3 4493 aa10.37□□□□□ -0.75
CLN3-227ENST00000567495 Q6ZQY7 126 aa10.37□□□□□ -0.75
CLN3-227ENST00000567495 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.36□□□□□ -0.75
CLN3-227ENST00000567495 XP32Q5T750 250 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 278.7 ms