RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 TAL2Q16559 108 aa6.96□□□□□ -1.3
CLN3-226ENST00000567160 PPDPFQ9H3Y8 114 aa6.96□□□□□ -1.3
CLN3-226ENST00000567160 IGKV2-28A0A075B6P5 120 aa6.95□□□□□ -1.3
CLN3-226ENST00000567160 IGKV2D-28P01615 120 aa6.95□□□□□ -1.3
CLN3-226ENST00000567160 KRTAP11-1Q8IUC1 163 aa6.95□□□□□ -1.3
CLN3-226ENST00000567160 CEND1Q8N111 149 aa6.95□□□□□ -1.3
CLN3-226ENST00000567160 TRBV10-2A0A0K0K1G8 114 aa6.94□□□□□ -1.3
CLN3-226ENST00000567160 S100A7L2Q5SY68 101 aa6.94□□□□□ -1.3
CLN3-226ENST00000567160 OR13C6PQ8NH95 151 aa6.94□□□□□ -1.3
CLN3-226ENST00000567160 TRBV10-3A0A0K0K1G6 114 aa6.93□□□□□ -1.3
CLN3-226ENST00000567160 DDTP30046 118 aa6.93□□□□□ -1.3
CLN3-226ENST00000567160 FXYD2P54710 66 aa6.93□□□□□ -1.3
CLN3-226ENST00000567160 CTAG1AP78358 180 aa6.93□□□□□ -1.3
CLN3-226ENST00000567160 LCE2AQ5TA79 106 aaPredicted RBP6.93□□□□□ -1.3
CLN3-226ENST00000567160 LINC00337Q8N6G1 96 aa6.93□□□□□ -1.3
CLN3-226ENST00000567160 IGLV1-50A0A075B6I6 118 aa6.92□□□□□ -1.3
CLN3-226ENST00000567160 A6NDN8 102 aa6.92□□□□□ -1.3
CLN3-226ENST00000567160 PSORS1C2Q9UIG4 136 aa6.91□□□□□ -1.3
CLN3-226ENST00000567160 TMEM238LA0A1B0GVL6 79 aa6.9□□□□□ -1.3
CLN3-226ENST00000567160 A6NJY4 79 aa6.9□□□□□ -1.3
CLN3-226ENST00000567160 IGLV6-57P01721 117 aa6.9□□□□□ -1.3
CLN3-226ENST00000567160 HINT1P49773 126 aaPredicted RBP6.9□□□□□ -1.3
CLN3-226ENST00000567160 TRAV13-2A0A0B4J235 113 aa6.89□□□□□ -1.31
CLN3-226ENST00000567160 CFC1BP0CG36 223 aa6.89□□□□□ -1.31
CLN3-226ENST00000567160 CFC1P0CG37 223 aa6.89□□□□□ -1.31
CLN3-226ENST00000567160 RPL13AP40429 203 aaKnown RBP6.89□□□□□ -1.31
CLN3-226ENST00000567160 C1orf137Q5JT78 98 aa6.89□□□□□ -1.31
CLN3-226ENST00000567160 BVES-AS1Q5T3Y7 98 aa6.89□□□□□ -1.31
CLN3-226ENST00000567160 RAB37Q96AX2 223 aa6.89□□□□□ -1.31
CLN3-226ENST00000567160 TMEM126AQ9H061 195 aa6.89□□□□□ -1.31
CLN3-226ENST00000567160 NHP2Q9NX24 153 aaKnown RBP6.89□□□□□ -1.31
CLN3-226ENST00000567160 TRAV23DV6A0A075B6W5 121 aa6.88□□□□□ -1.31
CLN3-226ENST00000567160 M0R143 59 aa6.88□□□□□ -1.31
CLN3-226ENST00000567160 PRYO14603 147 aa6.88□□□□□ -1.31
CLN3-226ENST00000567160 KCNQ1DNQ9H478 68 aa6.88□□□□□ -1.31
CLN3-226ENST00000567160 A0A0B4J2C4 111 aa6.87□□□□□ -1.31
CLN3-226ENST00000567160 PCP4L1A6NKN8 68 aa6.87□□□□□ -1.31
CLN3-226ENST00000567160 H7C2G1 150 aa6.87□□□□□ -1.31
CLN3-226ENST00000567160 K7ERJ3 54 aa6.87□□□□□ -1.31
CLN3-226ENST00000567160 BCE1O60756 84 aa6.86□□□□□ -1.31
CLN3-226ENST00000567160 BATFQ16520 125 aa6.86□□□□□ -1.31
CLN3-226ENST00000567160 FAM19A1Q7Z5A9 133 aa6.86□□□□□ -1.31
CLN3-226ENST00000567160 SMIM11BQ8TCY0 68 aa6.85□□□□□ -1.31
CLN3-226ENST00000567160 PRO1854Q9UHT4 67 aa6.85□□□□□ -1.31
CLN3-226ENST00000567160 CBY1Q9Y3M2 126 aa6.85□□□□□ -1.31
CLN3-226ENST00000567160 ETDCA0A1B0GVM5 59 aa6.84□□□□□ -1.31
CLN3-226ENST00000567160 ZNF73O43830 326 aaPredicted RBP6.84□□□□□ -1.31
CLN3-226ENST00000567160 IGLV7-43P04211 117 aa6.84□□□□□ -1.31
CLN3-226ENST00000567160 UBE2AP49459 152 aa6.84□□□□□ -1.31
CLN3-226ENST00000567160 Q1RN00 199 aa6.84□□□□□ -1.31
CLN3-226ENST00000567160 C6orf99Q4VX62 202 aa6.84□□□□□ -1.31
CLN3-226ENST00000567160 DIRC1Q969H9 104 aa6.84□□□□□ -1.31
CLN3-226ENST00000567160 A0A1B0GWB2 263 aa6.83□□□□□ -1.32
CLN3-226ENST00000567160 SPRR1AP35321 89 aa6.83□□□□□ -1.32
CLN3-226ENST00000567160 PRLHP81277 87 aa6.83□□□□□ -1.32
CLN3-226ENST00000567160 PRR4Q16378 134 aa6.83□□□□□ -1.32
CLN3-226ENST00000567160 KRTAP4-16G5E9R7 235 aaPredicted RBP6.82□□□□□ -1.32
CLN3-226ENST00000567160 B5MCH6 92 aa6.81□□□□□ -1.32
CLN3-226ENST00000567160 RPL28P46779 137 aaKnown RBP6.81□□□□□ -1.32
CLN3-226ENST00000567160 COX7BP24311 80 aa6.8□□□□□ -1.32
CLN3-226ENST00000567160 KRTAP13-1Q8IUC0 172 aa6.8□□□□□ -1.32
CLN3-226ENST00000567160 HIGD2AQ9BW72 106 aa6.8□□□□□ -1.32
CLN3-226ENST00000567160 ZNF861PO60384 105 aa6.79□□□□□ -1.32
CLN3-226ENST00000567160 TSPAN13O95857 204 aa6.79□□□□□ -1.32
CLN3-226ENST00000567160 Q6ZRX8 168 aa6.79□□□□□ -1.32
CLN3-226ENST00000567160 FSIP2Q5CZC0 6907 aa6.78□□□□□ -1.32
CLN3-226ENST00000567160 PSMB2P49721 201 aa6.78□□□□□ -1.32
CLN3-226ENST00000567160 ELOF1P60002 83 aaKnown RBP6.78□□□□□ -1.32
CLN3-226ENST00000567160 SNHG12Q9BXW3 62 aa6.78□□□□□ -1.32
CLN3-226ENST00000567160 CRCT1Q9UGL9 99 aa6.78□□□□□ -1.32
CLN3-226ENST00000567160 TRBV7-6A0A0J9YX20 115 aa6.77□□□□□ -1.33
CLN3-226ENST00000567160 H0Y9J4 135 aa6.77□□□□□ -1.33
CLN3-226ENST00000567160 VAMP3Q15836 100 aa6.77□□□□□ -1.33
CLN3-226ENST00000567160 Q9BRP9 147 aa6.77□□□□□ -1.33
CLN3-226ENST00000567160 TRIAP1O43715 76 aa6.76□□□□□ -1.33
CLN3-226ENST00000567160 PRR26Q8N8Z3 221 aa6.76□□□□□ -1.33
CLN3-226ENST00000567160 SMCR5Q8TEV8 140 aa6.76□□□□□ -1.33
CLN3-226ENST00000567160 NAA38Q9BRA0 125 aaKnown RBP6.76□□□□□ -1.33
CLN3-226ENST00000567160 ERC2-IT1O76042 136 aa6.75□□□□□ -1.33
CLN3-226ENST00000567160 LCE2DQ5TA82 110 aaPredicted RBP6.74□□□□□ -1.33
CLN3-226ENST00000567160 DHRS4-AS1Q9P1J3 65 aa6.74□□□□□ -1.33
CLN3-226ENST00000567160 H0YGX0 51 aa6.72□□□□□ -1.33
CLN3-226ENST00000567160 TAX1BP3O14907 124 aa6.72□□□□□ -1.33
CLN3-226ENST00000567160 SLC25A20O43772 301 aa6.72□□□□□ -1.33
CLN3-226ENST00000567160 COX6CP09669 75 aa6.72□□□□□ -1.33
CLN3-226ENST00000567160 LINC00575Q6W349 94 aa6.72□□□□□ -1.33
CLN3-226ENST00000567160 CLEC2BQ92478 149 aa6.72□□□□□ -1.33
CLN3-226ENST00000567160 SCGB1C2P0DMR2 95 aa6.71□□□□□ -1.34
CLN3-226ENST00000567160 COL5A1-AS1Q5SY13 56 aa6.71□□□□□ -1.34
CLN3-226ENST00000567160 ST20-AS1Q8NBB2 130 aa6.71□□□□□ -1.34
CLN3-226ENST00000567160 FAM218AQ96MZ4 157 aa6.71□□□□□ -1.34
CLN3-226ENST00000567160 hADV29S1A0JD25 119 aa6.7□□□□□ -1.34
CLN3-226ENST00000567160 H3BUT2 72 aa6.7□□□□□ -1.34
CLN3-226ENST00000567160 C9orf118A6NHY6 69 aa6.69□□□□□ -1.34
CLN3-226ENST00000567160 SPRR4Q96PI1 79 aa6.69□□□□□ -1.34
CLN3-226ENST00000567160 ZNF706Q9Y5V0 76 aaPredicted RBP6.69□□□□□ -1.34
CLN3-226ENST00000567160 GAGE2AQ6NT46 116 aa6.68□□□□□ -1.34
CLN3-226ENST00000567160 DEFB105AQ8NG35 78 aa6.68□□□□□ -1.34
CLN3-226ENST00000567160 ANAPC11Q9NYG5 84 aa6.68□□□□□ -1.34
CLN3-226ENST00000567160 SNCGO76070 127 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms