RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 OR13C6PQ8NH95 151 aa6.78□□□□□ -1.32
CLN3-224ENST00000566816 PKHD1L1Q86WI1 4243 aa6.77□□□□□ -1.32
CLN3-224ENST00000566816 TRAV23DV6A0A075B6W5 121 aa6.77□□□□□ -1.33
CLN3-224ENST00000566816 TRBV7-6A0A0J9YX20 115 aa6.77□□□□□ -1.33
CLN3-224ENST00000566816 TSTD3H0UI37 97 aa6.77□□□□□ -1.33
CLN3-224ENST00000566816 INAFM2P0DMQ5 153 aa6.77□□□□□ -1.33
CLN3-224ENST00000566816 HNRNPA3P51991 378 aaKnown RBP6.77□□□□□ -1.33
CLN3-224ENST00000566816 DIRC1Q969H9 104 aa6.77□□□□□ -1.33
CLN3-224ENST00000566816 A0A0B4J2C4 111 aa6.76□□□□□ -1.33
CLN3-224ENST00000566816 A6NDN8 102 aa6.76□□□□□ -1.33
CLN3-224ENST00000566816 ZNF73O43830 326 aaPredicted RBP6.76□□□□□ -1.33
CLN3-224ENST00000566816 HINT1P49773 126 aaPredicted RBP6.76□□□□□ -1.33
CLN3-224ENST00000566816 ETDCA0A1B0GVM5 59 aa6.75□□□□□ -1.33
CLN3-224ENST00000566816 CFC1BP0CG36 223 aa6.75□□□□□ -1.33
CLN3-224ENST00000566816 CFC1P0CG37 223 aa6.75□□□□□ -1.33
CLN3-224ENST00000566816 UBE2AP49459 152 aa6.75□□□□□ -1.33
CLN3-224ENST00000566816 PRO1933Q9H354 126 aa6.75□□□□□ -1.33
CLN3-224ENST00000566816 ABCA13Q86UQ4 5058 aa6.74□□□□□ -1.33
CLN3-224ENST00000566816 B5MCH6 92 aa6.74□□□□□ -1.33
CLN3-224ENST00000566816 FAM19A1Q7Z5A9 133 aa6.74□□□□□ -1.33
CLN3-224ENST00000566816 A0A1B0GWB2 263 aa6.73□□□□□ -1.33
CLN3-224ENST00000566816 FXYD2P54710 66 aa6.73□□□□□ -1.33
CLN3-224ENST00000566816 Q6ZRX8 168 aa6.73□□□□□ -1.33
CLN3-224ENST00000566816 RAB37Q96AX2 223 aa6.72□□□□□ -1.33
CLN3-224ENST00000566816 PRO1854Q9UHT4 67 aa6.72□□□□□ -1.33
CLN3-224ENST00000566816 OXTP01178 125 aa6.71□□□□□ -1.34
CLN3-224ENST00000566816 ELOF1P60002 83 aaKnown RBP6.71□□□□□ -1.34
CLN3-224ENST00000566816 C6orf99Q4VX62 202 aa6.71□□□□□ -1.34
CLN3-224ENST00000566816 BVES-AS1Q5T3Y7 98 aa6.71□□□□□ -1.34
CLN3-224ENST00000566816 SMIM11BQ8TCY0 68 aa6.71□□□□□ -1.34
CLN3-224ENST00000566816 M0R143 59 aa6.7□□□□□ -1.34
CLN3-224ENST00000566816 CTAG1AP78358 180 aa6.7□□□□□ -1.34
CLN3-224ENST00000566816 PRLHP81277 87 aa6.7□□□□□ -1.34
CLN3-224ENST00000566816 VAMP3Q15836 100 aa6.7□□□□□ -1.34
CLN3-224ENST00000566816 DHRS4-AS1Q9P1J3 65 aa6.7□□□□□ -1.34
CLN3-224ENST00000566816 FLG2Q5D862 2391 aaPredicted RBP6.7□□□□□ -1.34
CLN3-224ENST00000566816 MYCBP2O75592 4640 aa6.7□□□□□ -1.34
CLN3-224ENST00000566816 FAT3Q8TDW7 4589 aa6.69□□□□□ -1.34
CLN3-224ENST00000566816 COX7BP24311 80 aa6.69□□□□□ -1.34
CLN3-224ENST00000566816 RPL13AP40429 203 aaKnown RBP6.69□□□□□ -1.34
CLN3-224ENST00000566816 KRTAP29-1A8MX34 341 aaPredicted RBP6.68□□□□□ -1.34
CLN3-224ENST00000566816 SMCR5Q8TEV8 140 aa6.68□□□□□ -1.34
CLN3-224ENST00000566816 LINC01600Q96MT4 127 aa6.68□□□□□ -1.34
CLN3-224ENST00000566816 Q9BRP9 147 aa6.68□□□□□ -1.34
CLN3-224ENST00000566816 ZNF706Q9Y5V0 76 aaPredicted RBP6.68□□□□□ -1.34
CLN3-224ENST00000566816 LRP1Q07954 4544 aaKnown RBP6.68□□□□□ -1.34
CLN3-224ENST00000566816 H0YGX0 51 aa6.67□□□□□ -1.34
CLN3-224ENST00000566816 HIGD2AQ9BW72 106 aa6.67□□□□□ -1.34
CLN3-224ENST00000566816 NHP2Q9NX24 153 aaKnown RBP6.67□□□□□ -1.34
CLN3-224ENST00000566816 KRTAP1-4P0C5Y4 121 aa6.66□□□□□ -1.34
CLN3-224ENST00000566816 FAM229BQ4G0N7 80 aa6.66□□□□□ -1.34
CLN3-224ENST00000566816 PCLOQ9Y6V0 5065 aa6.65□□□□□ -1.34
CLN3-224ENST00000566816 LINC00575Q6W349 94 aa6.64□□□□□ -1.35
CLN3-224ENST00000566816 SPRR4Q96PI1 79 aa6.64□□□□□ -1.35
CLN3-224ENST00000566816 A0A1B0GX51 115 aa6.63□□□□□ -1.35
CLN3-224ENST00000566816 SLC25A20O43772 301 aa6.63□□□□□ -1.35
CLN3-224ENST00000566816 ERC2-IT1O76042 136 aa6.63□□□□□ -1.35
CLN3-224ENST00000566816 KRTAP10-8P60410 259 aa6.63□□□□□ -1.35
CLN3-224ENST00000566816 LINC00483Q53H64 154 aa6.63□□□□□ -1.35
CLN3-224ENST00000566816 TNXBP22105 4242 aa6.62□□□□□ -1.35
CLN3-224ENST00000566816 H7C2G1 150 aa6.62□□□□□ -1.35
CLN3-224ENST00000566816 SNCGO76070 127 aa6.62□□□□□ -1.35
CLN3-224ENST00000566816 COX6CP09669 75 aa6.62□□□□□ -1.35
CLN3-224ENST00000566816 SPRR1BP22528 89 aa6.62□□□□□ -1.35
CLN3-224ENST00000566816 Q1RN00 199 aa6.62□□□□□ -1.35
CLN3-224ENST00000566816 CRYGAP11844 174 aa6.61□□□□□ -1.35
CLN3-224ENST00000566816 hADV29S1A0JD25 119 aa6.6□□□□□ -1.35
CLN3-224ENST00000566816 K7ERJ3 54 aa6.6□□□□□ -1.35
CLN3-224ENST00000566816 TSPAN13O95857 204 aa6.6□□□□□ -1.35
CLN3-224ENST00000566816 IGLV5-48A0A075B6I7 105 aa6.59□□□□□ -1.35
CLN3-224ENST00000566816 TRIAP1O43715 76 aa6.59□□□□□ -1.35
CLN3-224ENST00000566816 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.59□□□□□ -1.35
CLN3-224ENST00000566816 TEX49A0A1B0GTD5 131 aa6.58□□□□□ -1.36
CLN3-224ENST00000566816 GHRHP01286 108 aa6.58□□□□□ -1.36
CLN3-224ENST00000566816 MT1HL1P0DM35 61 aa6.58□□□□□ -1.36
CLN3-224ENST00000566816 OCIAD2Q56VL3 154 aa6.58□□□□□ -1.36
CLN3-224ENST00000566816 PPDPFLQ8WWR9 84 aa6.58□□□□□ -1.36
CLN3-224ENST00000566816 DMBT1Q9UGM3 2413 aaPredicted RBP6.57□□□□□ -1.36
CLN3-224ENST00000566816 PSMB2P49721 201 aa6.57□□□□□ -1.36
CLN3-224ENST00000566816 GAGE2AQ6NT46 116 aa6.57□□□□□ -1.36
CLN3-224ENST00000566816 PRR26Q8N8Z3 221 aa6.57□□□□□ -1.36
CLN3-224ENST00000566816 A0A087X002 238 aa6.56□□□□□ -1.36
CLN3-224ENST00000566816 J3QL48 77 aa6.56□□□□□ -1.36
CLN3-224ENST00000566816 LINC01547P58512 204 aaPredicted RBP6.56□□□□□ -1.36
CLN3-224ENST00000566816 ST20-AS1Q8NBB2 130 aa6.56□□□□□ -1.36
CLN3-224ENST00000566816 H3BQ85 93 aa6.55□□□□□ -1.36
CLN3-224ENST00000566816 SSBP3-AS1Q7Z2R9 100 aa6.55□□□□□ -1.36
CLN3-224ENST00000566816 ANAPC11Q9NYG5 84 aa6.55□□□□□ -1.36
CLN3-224ENST00000566816 SCGB1C2P0DMR2 95 aa6.54□□□□□ -1.36
CLN3-224ENST00000566816 KRTAP13-2Q52LG2 175 aa6.54□□□□□ -1.36
CLN3-224ENST00000566816 Q6ZQY7 126 aa6.54□□□□□ -1.36
CLN3-224ENST00000566816 Q8N377 158 aa6.54□□□□□ -1.36
CLN3-224ENST00000566816 TYMSOSQ8TAI1 123 aa6.54□□□□□ -1.36
CLN3-224ENST00000566816 FAM218AQ96MZ4 157 aa6.54□□□□□ -1.36
CLN3-224ENST00000566816 LAMTOR3Q9UHA4 124 aa6.54□□□□□ -1.36
CLN3-224ENST00000566816 TRACP01848 142 aa6.53□□□□□ -1.36
CLN3-224ENST00000566816 BATFQ16520 125 aa6.53□□□□□ -1.36
CLN3-224ENST00000566816 SNHG12Q9BXW3 62 aa6.53□□□□□ -1.36
CLN3-224ENST00000566816 C9orf118A6NHY6 69 aa6.52□□□□□ -1.37
CLN3-224ENST00000566816 LST1O00453 97 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms