RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	TEP1	Q99973	2627 aa	Known RBP	4.03	□□□□□ -1.76
CLN3-223	ENST00000566472	IGLV5-48	A0A075B6I7	105 aa		4.03	□□□□□ -1.76
CLN3-223	ENST00000566472		M0R2N4	97 aa		4.03	□□□□□ -1.76
CLN3-223	ENST00000566472	PRB2	P02812	416 aa	Predicted RBP	4.03	□□□□□ -1.76
CLN3-223	ENST00000566472	MRPL55	Q7Z7F7	128 aa	Known RBP	4.03	□□□□□ -1.76
CLN3-223	ENST00000566472	APLN	Q9ULZ1	77 aa		4.03	□□□□□ -1.76
CLN3-223	ENST00000566472	F8	P00451	2351 aa		4.03	□□□□□ -1.76
CLN3-223	ENST00000566472	FAM19A1	Q7Z5A9	133 aa		4.02	□□□□□ -1.77
CLN3-223	ENST00000566472		Q8N377	158 aa		4.02	□□□□□ -1.77
CLN3-223	ENST00000566472	B9D2	Q9BPU9	175 aa		4.02	□□□□□ -1.77
CLN3-223	ENST00000566472	DNAH3	Q8TD57	4116 aa		4.02	□□□□□ -1.77
CLN3-223	ENST00000566472	C16orf90	A8MZG2	172 aa		4.01	□□□□□ -1.77
CLN3-223	ENST00000566472	HAMP	P81172	84 aa		4.01	□□□□□ -1.77
CLN3-223	ENST00000566472	TNP2	Q05952	138 aa		4.01	□□□□□ -1.77
CLN3-223	ENST00000566472	REG3G	Q6UW15	175 aa		4.01	□□□□□ -1.77
CLN3-223	ENST00000566472	KRTAP7-1	Q8IUC3	87 aa		4.01	□□□□□ -1.77
CLN3-223	ENST00000566472	UBE2DNL	Q8IWF7	75 aa		4.01	□□□□□ -1.77
CLN3-223	ENST00000566472	ATR	Q13535	2644 aa		4.01	□□□□□ -1.77
CLN3-223	ENST00000566472	TRAV7	A0A075B6U4	112 aa		4	□□□□□ -1.77
CLN3-223	ENST00000566472	FAM168B	A1KXE4	195 aa		4	□□□□□ -1.77
CLN3-223	ENST00000566472	NUPR2	A6NF83	97 aa		4	□□□□□ -1.77
CLN3-223	ENST00000566472	TMEM258	P61165	79 aa		4	□□□□□ -1.77
CLN3-223	ENST00000566472	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	4	□□□□□ -1.77
CLN3-223	ENST00000566472		Q9BRP9	147 aa		4	□□□□□ -1.77
CLN3-223	ENST00000566472	NIPBL	Q6KC79	2804 aa	eCLIP	4	□□□□□ -1.77
CLN3-223	ENST00000566472	VWF	P04275	2813 aa		3.99	□□□□□ -1.77
CLN3-223	ENST00000566472	TENM1	Q9UKZ4	2725 aa		3.99	□□□□□ -1.77
CLN3-223	ENST00000566472	RPL37AP8	A6NKH3	93 aa		3.99	□□□□□ -1.77
CLN3-223	ENST00000566472	PSCA	O43653	123 aa		3.99	□□□□□ -1.77
CLN3-223	ENST00000566472	FUS	P35637	526 aa	Known RBP eCLIP	3.99	□□□□□ -1.77
CLN3-223	ENST00000566472	KRTAP1-5	Q9BYS1	174 aa		3.99	□□□□□ -1.77
CLN3-223	ENST00000566472		A0A096LNI7	61 aa		3.98	□□□□□ -1.77
CLN3-223	ENST00000566472	UBE2B	P63146	152 aa		3.98	□□□□□ -1.77
CLN3-223	ENST00000566472	NREP	Q16612	68 aa		3.98	□□□□□ -1.77
CLN3-223	ENST00000566472		Q8NBF4	154 aa		3.98	□□□□□ -1.77
CLN3-223	ENST00000566472	IGLV8-61	A0A075B6I0	122 aa		3.97	□□□□□ -1.77
CLN3-223	ENST00000566472		F8WEM9	126 aa		3.97	□□□□□ -1.77
CLN3-223	ENST00000566472		H0Y9J4	135 aa		3.97	□□□□□ -1.77
CLN3-223	ENST00000566472	C1orf137	Q5JT78	98 aa		3.97	□□□□□ -1.77
CLN3-223	ENST00000566472	DEFB105A	Q8NG35	78 aa		3.97	□□□□□ -1.77
CLN3-223	ENST00000566472	SPRR4	Q96PI1	79 aa		3.97	□□□□□ -1.77
CLN3-223	ENST00000566472	NBEAL2	Q6ZNJ1	2754 aa		3.96	□□□□□ -1.78
CLN3-223	ENST00000566472	NBDY	A0A0U1RRE5	68 aa		3.96	□□□□□ -1.78
CLN3-223	ENST00000566472		A0A1W2PNM2	257 aa		3.96	□□□□□ -1.78
CLN3-223	ENST00000566472	BPY2	O14599	106 aa		3.96	□□□□□ -1.78
CLN3-223	ENST00000566472	IGKV4-1	P06312	121 aa		3.96	□□□□□ -1.78
CLN3-223	ENST00000566472	RPS28	P62857	69 aa	Known RBP	3.96	□□□□□ -1.78
CLN3-223	ENST00000566472	ST20-AS1	Q8NBB2	130 aa		3.96	□□□□□ -1.78
CLN3-223	ENST00000566472	LINC00474	Q9P2X8	69 aa		3.96	□□□□□ -1.78
CLN3-223	ENST00000566472		A0A1W2PNN7	141 aa		3.95	□□□□□ -1.78
CLN3-223	ENST00000566472	LRCOL1	A6NCL2	159 aa		3.95	□□□□□ -1.78
CLN3-223	ENST00000566472		J3KT08	172 aa		3.95	□□□□□ -1.78
CLN3-223	ENST00000566472	ERC2-IT1	O76042	136 aa		3.95	□□□□□ -1.78
CLN3-223	ENST00000566472	SPRR1B	P22528	89 aa		3.95	□□□□□ -1.78
CLN3-223	ENST00000566472	SMIM29	Q86T20	159 aa		3.95	□□□□□ -1.78
CLN3-223	ENST00000566472	C9orf163	Q8N9P6	203 aa		3.95	□□□□□ -1.78
CLN3-223	ENST00000566472	CMYA5	Q8N3K9	4069 aa		3.94	□□□□□ -1.78
CLN3-223	ENST00000566472	TRRAP	Q9Y4A5	3859 aa		3.94	□□□□□ -1.78
CLN3-223	ENST00000566472	IGKV2-24	A0A0C4DH68	120 aa		3.94	□□□□□ -1.78
CLN3-223	ENST00000566472	C3orf84	H3BNL1	204 aa		3.94	□□□□□ -1.78
CLN3-223	ENST00000566472	KLKP1	Q107X0	134 aa		3.94	□□□□□ -1.78
CLN3-223	ENST00000566472		Q6ZRN7	208 aa	Predicted RBP	3.94	□□□□□ -1.78
CLN3-223	ENST00000566472	SCX	Q7RTU7	201 aa		3.94	□□□□□ -1.78
CLN3-223	ENST00000566472	EPM2A	B3EWF7	344 aa		3.93	□□□□□ -1.78
CLN3-223	ENST00000566472	NDUFC1	O43677	76 aa		3.93	□□□□□ -1.78
CLN3-223	ENST00000566472	C20orf197	Q8N268	126 aa		3.93	□□□□□ -1.78
CLN3-223	ENST00000566472	LINC00476	Q8WZB0	136 aa		3.93	□□□□□ -1.78
CLN3-223	ENST00000566472	MDFI	Q99750	246 aa		3.93	□□□□□ -1.78
CLN3-223	ENST00000566472	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	3.92	□□□□□ -1.78
CLN3-223	ENST00000566472	CYSTM1	Q9H1C7	97 aa		3.92	□□□□□ -1.78
CLN3-223	ENST00000566472	HUWE1	Q7Z6Z7	4374 aa	Known RBP	3.91	□□□□□ -1.78
CLN3-223	ENST00000566472	FAM236D	A0A1B0GTK5	79 aa		3.91	□□□□□ -1.78
CLN3-223	ENST00000566472	FAM236C	P0DP71	79 aa		3.91	□□□□□ -1.78
CLN3-223	ENST00000566472	UBE2A	P49459	152 aa		3.91	□□□□□ -1.78
CLN3-223	ENST00000566472	ATP5E	P56381	51 aa	Predicted RBP	3.91	□□□□□ -1.78
CLN3-223	ENST00000566472	PRLH	P81277	87 aa		3.91	□□□□□ -1.78
CLN3-223	ENST00000566472	IGFL1	Q6UW32	110 aa		3.91	□□□□□ -1.78
CLN3-223	ENST00000566472	PHF5A	Q7RTV0	110 aa	Known RBP	3.91	□□□□□ -1.78
CLN3-223	ENST00000566472	BAHCC1	Q9P281	2608 aa		3.91	□□□□□ -1.78
CLN3-223	ENST00000566472	TENM3	Q9P273	2699 aa		3.9	□□□□□ -1.78
CLN3-223	ENST00000566472	DNAH1	Q9P2D7	4330 aa		3.9	□□□□□ -1.78
CLN3-223	ENST00000566472	MAST4	O15021	2626 aa		3.9	□□□□□ -1.79
CLN3-223	ENST00000566472	CHTF8	P0CG12	524 aa		3.9	□□□□□ -1.79
CLN3-223	ENST00000566472	DPH3	Q96FX2	82 aa		3.9	□□□□□ -1.79
CLN3-223	ENST00000566472	HIGD2A	Q9BW72	106 aa		3.9	□□□□□ -1.79
CLN3-223	ENST00000566472	OCR1	Q9BZK8	76 aa		3.9	□□□□□ -1.79
CLN3-223	ENST00000566472		H7BZZ5	65 aa		3.89	□□□□□ -1.79
CLN3-223	ENST00000566472	DSCR10	P59022	87 aa		3.89	□□□□□ -1.79
CLN3-223	ENST00000566472	KRTAP13-1	Q8IUC0	172 aa		3.89	□□□□□ -1.79
CLN3-223	ENST00000566472		Q8N9L7	120 aa		3.89	□□□□□ -1.79
CLN3-223	ENST00000566472	SPACA4	Q8TDM5	124 aa		3.89	□□□□□ -1.79
CLN3-223	ENST00000566472	FBN1	P35555	2871 aa	Known RBP	3.89	□□□□□ -1.79
CLN3-223	ENST00000566472		A0A087WTM6	91 aa		3.88	□□□□□ -1.79
CLN3-223	ENST00000566472	LCE6A	A0A183	80 aa		3.88	□□□□□ -1.79
CLN3-223	ENST00000566472	RPL37A	P61513	92 aa	Known RBP	3.88	□□□□□ -1.79
CLN3-223	ENST00000566472	KRTAP11-1	Q8IUC1	163 aa		3.88	□□□□□ -1.79
CLN3-223	ENST00000566472	TMEM254	Q8TBM7	123 aa		3.88	□□□□□ -1.79
CLN3-223	ENST00000566472	ANK2	Q01484	3957 aa		3.88	□□□□□ -1.79
CLN3-223	ENST00000566472		A0A0U1RQV1	116 aa		3.87	□□□□□ -1.79
CLN3-223	ENST00000566472		Q6ZR54	194 aa		3.87	□□□□□ -1.79

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