RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 C14orf132Q9NPU4 83 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 LINC00474Q9P2X8 69 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 VPREB1P12018 145 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 ANKRD29Q8N6D5 301 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 FAM30AQ9NZY2 134 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 GVQW2A0A096LPI5 108 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-209ENST00000560637 A0A0B4J2C4 111 aa3.55□□□□□ -1.84
VPS13C-209ENST00000560637 REG3GQ6UW15 175 aa3.55□□□□□ -1.84
VPS13C-209ENST00000560637 TIMM17BO60830 172 aa3.55□□□□□ -1.84
VPS13C-209ENST00000560637 ANAPC11Q9NYG5 84 aa3.55□□□□□ -1.84
VPS13C-209ENST00000560637 A0A1W2PNN7 141 aa3.54□□□□□ -1.84
VPS13C-209ENST00000560637 CDK2AP2O75956 126 aa3.54□□□□□ -1.84
VPS13C-209ENST00000560637 CIRBP-AS1Q8TBR5 109 aa3.54□□□□□ -1.84
VPS13C-209ENST00000560637 SEC61GP60059 68 aa3.54□□□□□ -1.84
VPS13C-209ENST00000560637 TEX49A0A1B0GTD5 131 aa3.53□□□□□ -1.84
VPS13C-209ENST00000560637 TRACP01848 142 aa3.53□□□□□ -1.84
VPS13C-209ENST00000560637 KRTAP10-2P60368 255 aa3.53□□□□□ -1.84
VPS13C-209ENST00000560637 C9orf129Q5T035 196 aaKnown RBP3.53□□□□□ -1.84
VPS13C-209ENST00000560637 SCXQ7RTU7 201 aa3.53□□□□□ -1.84
VPS13C-209ENST00000560637 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-209ENST00000560637 C9orf163Q8N9P6 203 aa3.53□□□□□ -1.84
VPS13C-209ENST00000560637 ST20-AS1Q8NBB2 130 aa3.52□□□□□ -1.85
VPS13C-209ENST00000560637 RPL28P46779 137 aaKnown RBP3.52□□□□□ -1.85
VPS13C-209ENST00000560637 RBM3P98179 157 aaKnown RBP3.52□□□□□ -1.85
VPS13C-209ENST00000560637 SMCR5Q8TEV8 140 aa3.52□□□□□ -1.85
VPS13C-209ENST00000560637 LCE6AA0A183 80 aa3.51□□□□□ -1.85
VPS13C-209ENST00000560637 IGKV3D-7A0A0C4DH55 119 aa3.51□□□□□ -1.85
VPS13C-209ENST00000560637 A0A0G2JQZ4 141 aa3.51□□□□□ -1.85
VPS13C-209ENST00000560637 LITAFQ99732 161 aa3.51□□□□□ -1.85
VPS13C-209ENST00000560637 CCKP06307 115 aa3.51□□□□□ -1.85
VPS13C-209ENST00000560637 DEFB116Q30KQ4 102 aa3.51□□□□□ -1.85
VPS13C-209ENST00000560637 LINC01561Q8N1V8 128 aa3.5□□□□□ -1.85
VPS13C-209ENST00000560637 EPM2AB3EWF7 344 aa3.5□□□□□ -1.85
VPS13C-209ENST00000560637 SIGMAR1Q99720 223 aa3.5□□□□□ -1.85
VPS13C-209ENST00000560637 TRBV10-2A0A0K0K1G8 114 aa3.5□□□□□ -1.85
VPS13C-209ENST00000560637 H0Y9J4 135 aa3.5□□□□□ -1.85
VPS13C-209ENST00000560637 TMEM256-PLSCR3K7ERE1 68 aa3.5□□□□□ -1.85
VPS13C-209ENST00000560637 NDUFS5O43920 106 aa3.5□□□□□ -1.85
VPS13C-209ENST00000560637 INAFM2P0DMQ5 153 aa3.5□□□□□ -1.85
VPS13C-209ENST00000560637 FAM218AQ96MZ4 157 aa3.5□□□□□ -1.85
VPS13C-209ENST00000560637 F8W1H4 67 aa3.49□□□□□ -1.85
VPS13C-209ENST00000560637 PANO1I0J062 215 aa3.49□□□□□ -1.85
VPS13C-209ENST00000560637 PLA2G1BP04054 148 aaKnown RBP3.49□□□□□ -1.85
VPS13C-209ENST00000560637 FAM19A3Q7Z5A8 133 aa3.49□□□□□ -1.85
VPS13C-209ENST00000560637 PPDPFLQ8WWR9 84 aa3.49□□□□□ -1.85
VPS13C-209ENST00000560637 UBL5Q9BZL1 73 aa3.49□□□□□ -1.85
VPS13C-209ENST00000560637 LST1O00453 97 aa3.49□□□□□ -1.85
VPS13C-209ENST00000560637 Q9BRP9 147 aa3.49□□□□□ -1.85
VPS13C-209ENST00000560637 NDUFC2O95298 119 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 MOBPQ13875 183 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 NREPQ16612 68 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 DHRS4-AS1Q9P1J3 65 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 RPL37AP61513 92 aaKnown RBP3.48□□□□□ -1.85
VPS13C-209ENST00000560637 Q8NDZ9 215 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 PSORS1C2Q9UIG4 136 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 CSMD3Q7Z407 3707 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 KRTAP10-1P60331 282 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 SDIM1Q6ZPB5 146 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 TEN1Q86WV5 123 aa3.48□□□□□ -1.85
VPS13C-209ENST00000560637 NDUFV3P56181 108 aaKnown RBP3.47□□□□□ -1.85
VPS13C-209ENST00000560637 LINC00575Q6W349 94 aa3.47□□□□□ -1.85
VPS13C-209ENST00000560637 LINC00336Q6ZUF6 198 aa3.47□□□□□ -1.85
VPS13C-209ENST00000560637 KRTAP26-1Q6PEX3 210 aa3.46□□□□□ -1.86
VPS13C-209ENST00000560637 SPACA4Q8TDM5 124 aa3.46□□□□□ -1.86
VPS13C-209ENST00000560637 A0A087WSZ3 146 aa3.46□□□□□ -1.86
VPS13C-209ENST00000560637 ERC2-IT1O76042 136 aa3.46□□□□□ -1.86
VPS13C-209ENST00000560637 H3BT86 120 aa3.46□□□□□ -1.86
VPS13C-209ENST00000560637 CNBPP62633 177 aaKnown RBP3.46□□□□□ -1.86
VPS13C-209ENST00000560637 Q6ZR54 194 aa3.46□□□□□ -1.86
VPS13C-209ENST00000560637 JMJD7-PLA2G4BH0Y9G9 81 aa3.45□□□□□ -1.86
VPS13C-209ENST00000560637 ANK2Q01484 3957 aa3.45□□□□□ -1.86
VPS13C-209ENST00000560637 IGLV1-50A0A075B6I6 118 aa3.45□□□□□ -1.86
VPS13C-209ENST00000560637 Q6ZRX8 168 aa3.45□□□□□ -1.86
VPS13C-209ENST00000560637 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.45□□□□□ -1.86
VPS13C-209ENST00000560637 ZNF706Q9Y5V0 76 aaPredicted RBP3.45□□□□□ -1.86
VPS13C-209ENST00000560637 BCE1O60756 84 aa3.44□□□□□ -1.86
VPS13C-209ENST00000560637 IGLV6-57P01721 117 aa3.43□□□□□ -1.86
VPS13C-209ENST00000560637 WFDC13Q8IUB5 93 aa3.43□□□□□ -1.86
VPS13C-209ENST00000560637 TYMSOSQ8TAI1 123 aa3.43□□□□□ -1.86
VPS13C-209ENST00000560637 RETNLBQ9BQ08 111 aa3.43□□□□□ -1.86
VPS13C-209ENST00000560637 BPY2O14599 106 aa3.42□□□□□ -1.86
VPS13C-209ENST00000560637 ELOF1P60002 83 aaKnown RBP3.42□□□□□ -1.86
VPS13C-209ENST00000560637 NDUFB1O75438 58 aa3.42□□□□□ -1.86
VPS13C-209ENST00000560637 CRYGAP11844 174 aa3.42□□□□□ -1.86
VPS13C-209ENST00000560637 Q6ZRN7 208 aaPredicted RBP3.42□□□□□ -1.86
VPS13C-209ENST00000560637 Q8N9L7 120 aa3.41□□□□□ -1.86
VPS13C-209ENST00000560637 ZNF861PO60384 105 aa3.41□□□□□ -1.86
VPS13C-209ENST00000560637 TLX1NBP0CAT3 122 aa3.41□□□□□ -1.86
VPS13C-209ENST00000560637 KCNQ1DNQ9H478 68 aa3.41□□□□□ -1.86
VPS13C-209ENST00000560637 IGLV7-43P04211 117 aa3.4□□□□□ -1.86
VPS13C-209ENST00000560637 PRR4Q16378 134 aa3.4□□□□□ -1.87
VPS13C-209ENST00000560637 IGHV6-1A0A0B4J1U7 121 aa3.4□□□□□ -1.87
VPS13C-209ENST00000560637 PRR26Q8N8Z3 221 aa3.4□□□□□ -1.87
VPS13C-209ENST00000560637 IGKV4-1P06312 121 aa3.39□□□□□ -1.87
VPS13C-209ENST00000560637 LCE2CQ5TA81 110 aa3.39□□□□□ -1.87
VPS13C-209ENST00000560637 KRTAP11-1Q8IUC1 163 aa3.38□□□□□ -1.87
VPS13C-209ENST00000560637 Q5VSD8 79 aa3.38□□□□□ -1.87
VPS13C-209ENST00000560637 Q8N377 158 aa3.38□□□□□ -1.87
VPS13C-209ENST00000560637 A0A087WVE0 104 aa3.38□□□□□ -1.87
VPS13C-209ENST00000560637 A0A1B0GX51 115 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms