RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 Q6ZVQ6 151 aa7.6□□□□□ -1.19
CUX1-218ENST00000560541 Q8N9L7 120 aa7.59□□□□□ -1.19
CUX1-218ENST00000560541 PRYO14603 147 aa7.59□□□□□ -1.19
CUX1-218ENST00000560541 HIGD2AQ9BW72 106 aa7.59□□□□□ -1.19
CUX1-218ENST00000560541 A8MUN3 132 aa7.58□□□□□ -1.2
CUX1-218ENST00000560541 HIGD2BQ4VC39 106 aa7.58□□□□□ -1.2
CUX1-218ENST00000560541 LELP1Q5T871 98 aa7.58□□□□□ -1.2
CUX1-218ENST00000560541 Q6ZQT0 140 aa7.58□□□□□ -1.2
CUX1-218ENST00000560541 Q6ZTC4 211 aa7.58□□□□□ -1.2
CUX1-218ENST00000560541 C6orf48Q9UBA6 75 aa7.58□□□□□ -1.2
CUX1-218ENST00000560541 SPART-AS1P0CW21 52 aa7.57□□□□□ -1.2
CUX1-218ENST00000560541 INAFM1C9JVW0 142 aa7.57□□□□□ -1.2
CUX1-218ENST00000560541 BCE1O60756 84 aa7.57□□□□□ -1.2
CUX1-218ENST00000560541 IGLV6-57P01721 117 aa7.57□□□□□ -1.2
CUX1-218ENST00000560541 A0A0J9YWU9 116 aa7.57□□□□□ -1.2
CUX1-218ENST00000560541 BPY2O14599 106 aa7.57□□□□□ -1.2
CUX1-218ENST00000560541 IGHV4-30-4P0DP06 118 aa7.57□□□□□ -1.2
CUX1-218ENST00000560541 TRAV22A0A0B4J277 110 aa7.56□□□□□ -1.2
CUX1-218ENST00000560541 PRR34Q9NV39 138 aa7.55□□□□□ -1.2
CUX1-218ENST00000560541 KTN1-AS1Q86SY8 53 aa7.55□□□□□ -1.2
CUX1-218ENST00000560541 WFDC10BQ8IUB3 73 aa7.54□□□□□ -1.2
CUX1-218ENST00000560541 DIRC1Q969H9 104 aa7.54□□□□□ -1.2
CUX1-218ENST00000560541 ANK2Q01484 3957 aa7.53□□□□□ -1.2
CUX1-218ENST00000560541 TENM3Q9P273 2699 aa7.53□□□□□ -1.2
CUX1-218ENST00000560541 M0R378 163 aa7.53□□□□□ -1.2
CUX1-218ENST00000560541 hDV103S1A0JD37 113 aa7.53□□□□□ -1.2
CUX1-218ENST00000560541 ZNF73O43830 326 aaPredicted RBP7.53□□□□□ -1.2
CUX1-218ENST00000560541 C1orf64Q8NEQ6 169 aa7.53□□□□□ -1.2
CUX1-218ENST00000560541 J3QKU1 62 aa7.52□□□□□ -1.21
CUX1-218ENST00000560541 CAMK2N2Q96S95 79 aa7.52□□□□□ -1.21
CUX1-218ENST00000560541 LOC110117498A0A087WWA1 95 aa7.52□□□□□ -1.21
CUX1-218ENST00000560541 LINC00588Q9Y4M8 146 aa7.52□□□□□ -1.21
CUX1-218ENST00000560541 SYCNQ0VAF6 134 aa7.51□□□□□ -1.21
CUX1-218ENST00000560541 COX7BP24311 80 aa7.5□□□□□ -1.21
CUX1-218ENST00000560541 Q1T7F1 81 aa7.5□□□□□ -1.21
CUX1-218ENST00000560541 MUC7Q8TAX7 377 aa7.5□□□□□ -1.21
CUX1-218ENST00000560541 GVQW2A0A096LPI5 108 aaPredicted RBP7.49□□□□□ -1.21
CUX1-218ENST00000560541 CHKB-CPT1BH3BT56 60 aa7.49□□□□□ -1.21
CUX1-218ENST00000560541 KPRPQ5T749 579 aaPredicted RBP7.49□□□□□ -1.21
CUX1-218ENST00000560541 VPREB1P12018 145 aa7.48□□□□□ -1.21
CUX1-218ENST00000560541 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.48□□□□□ -1.21
CUX1-218ENST00000560541 C8orf87E5RJ46 101 aa7.47□□□□□ -1.21
CUX1-218ENST00000560541 ELOF1P60002 83 aaKnown RBP7.47□□□□□ -1.21
CUX1-218ENST00000560541 FAM30AQ9NZY2 134 aa7.47□□□□□ -1.21
CUX1-218ENST00000560541 UBE2BP63146 152 aa7.47□□□□□ -1.21
CUX1-218ENST00000560541 C16orf90A8MZG2 172 aa7.46□□□□□ -1.22
CUX1-218ENST00000560541 OXLD1Q5BKU9 147 aa7.46□□□□□ -1.22
CUX1-218ENST00000560541 FLNBO75369 2602 aaKnown RBP7.46□□□□□ -1.22
CUX1-218ENST00000560541 NOTCH1P46531 2555 aa7.46□□□□□ -1.22
CUX1-218ENST00000560541 STAB1Q9NY15 2570 aa7.46□□□□□ -1.22
CUX1-218ENST00000560541 C15orf56Q8N910 161 aa7.46□□□□□ -1.22
CUX1-218ENST00000560541 CXCL6P80162 114 aa7.45□□□□□ -1.22
CUX1-218ENST00000560541 KMT2BQ9UMN6 2715 aaPredicted RBP7.45□□□□□ -1.22
CUX1-218ENST00000560541 MAST4O15021 2626 aa7.44□□□□□ -1.22
CUX1-218ENST00000560541 IGKV2D-24A0A075B6R9 120 aa7.44□□□□□ -1.22
CUX1-218ENST00000560541 KRTAP26-1Q6PEX3 210 aa7.44□□□□□ -1.22
CUX1-218ENST00000560541 PDE6GP18545 87 aa7.44□□□□□ -1.22
CUX1-218ENST00000560541 EGFEM1PQ0D2K5 195 aa7.43□□□□□ -1.22
CUX1-218ENST00000560541 DEFB105AQ8NG35 78 aa7.43□□□□□ -1.22
CUX1-218ENST00000560541 BAHCC1Q9P281 2608 aa7.43□□□□□ -1.22
CUX1-218ENST00000560541 OCR1Q9BZK8 76 aa7.43□□□□□ -1.22
CUX1-218ENST00000560541 F8P00451 2351 aa7.43□□□□□ -1.22
CUX1-218ENST00000560541 HCG22E2RYF7 251 aa7.43□□□□□ -1.22
CUX1-218ENST00000560541 Q5VV11 94 aa7.43□□□□□ -1.22
CUX1-218ENST00000560541 FBN1P35555 2871 aaKnown RBP7.42□□□□□ -1.22
CUX1-218ENST00000560541 LINC00528Q8N1L1 170 aa7.42□□□□□ -1.22
CUX1-218ENST00000560541 C3orf84H3BNL1 204 aa7.41□□□□□ -1.22
CUX1-218ENST00000560541 ERC2-IT1O76042 136 aa7.4□□□□□ -1.22
CUX1-218ENST00000560541 PSCAO43653 123 aa7.4□□□□□ -1.23
CUX1-218ENST00000560541 KRTAP10-11P60412 298 aa7.4□□□□□ -1.23
CUX1-218ENST00000560541 PRR15LQ9BU68 103 aa7.4□□□□□ -1.23
CUX1-218ENST00000560541 H3BQ85 93 aa7.39□□□□□ -1.23
CUX1-218ENST00000560541 SERTAD4-AS1Q5TG53 156 aa7.39□□□□□ -1.23
CUX1-218ENST00000560541 UBE2AP49459 152 aa7.38□□□□□ -1.23
CUX1-218ENST00000560541 NKAPP1Q8N9T2 125 aa7.38□□□□□ -1.23
CUX1-218ENST00000560541 MDFIQ99750 246 aa7.38□□□□□ -1.23
CUX1-218ENST00000560541 A6NED7 52 aa7.37□□□□□ -1.23
CUX1-218ENST00000560541 RPL37AP8A6NKH3 93 aa7.37□□□□□ -1.23
CUX1-218ENST00000560541 NDUFS5O43920 106 aa7.37□□□□□ -1.23
CUX1-218ENST00000560541 IGKV4-1P06312 121 aa7.37□□□□□ -1.23
CUX1-218ENST00000560541 LCA10Q71F78 164 aa7.37□□□□□ -1.23
CUX1-218ENST00000560541 SMIM29Q86T20 159 aa7.36□□□□□ -1.23
CUX1-218ENST00000560541 C7orf33Q8WU49 177 aa7.36□□□□□ -1.23
CUX1-218ENST00000560541 DEFB131BA0A096LNP1 70 aa7.36□□□□□ -1.23
CUX1-218ENST00000560541 FAM168BA1KXE4 195 aa7.35□□□□□ -1.23
CUX1-218ENST00000560541 H3BNG1 76 aa7.34□□□□□ -1.23
CUX1-218ENST00000560541 A6NN06 94 aa7.34□□□□□ -1.23
CUX1-218ENST00000560541 Q8N377 158 aa7.34□□□□□ -1.23
CUX1-218ENST00000560541 COL6A5A8TX70 2615 aa7.34□□□□□ -1.24
CUX1-218ENST00000560541 LINC01556Q5JQF7 62 aa7.33□□□□□ -1.24
CUX1-218ENST00000560541 CASC10Q5T4H9 136 aa7.33□□□□□ -1.24
CUX1-218ENST00000560541 PRAC1Q96KF2 57 aa7.33□□□□□ -1.24
CUX1-218ENST00000560541 NBEAL1Q6ZS30 2694 aa7.32□□□□□ -1.24
CUX1-218ENST00000560541 ATP11AUNQ6ZP68 121 aa7.32□□□□□ -1.24
CUX1-218ENST00000560541 KCNQ1DNQ9H478 68 aa7.32□□□□□ -1.24
CUX1-218ENST00000560541 CMYA5Q8N3K9 4069 aa7.32□□□□□ -1.24
CUX1-218ENST00000560541 C7orf65Q6ZTY9 151 aa7.32□□□□□ -1.24
CUX1-218ENST00000560541 ST20-AS1Q8NBB2 130 aa7.31□□□□□ -1.24
CUX1-218ENST00000560541 Q9BRP9 147 aa7.3□□□□□ -1.24
CUX1-218ENST00000560541 PHF5AQ7RTV0 110 aaKnown RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms