RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 OR13C6PQ8NH95 151 aa13.17□□□□□ -0.3
SNX1-210ENST00000560260 TRAV23DV6A0A075B6W5 121 aa13.16□□□□□ -0.3
SNX1-210ENST00000560260 RPL28P46779 137 aaKnown RBP13.16□□□□□ -0.3
SNX1-210ENST00000560260 UBE2AP49459 152 aa13.16□□□□□ -0.3
SNX1-210ENST00000560260 LINC00518Q8N0U6 118 aa13.16□□□□□ -0.3
SNX1-210ENST00000560260 DIRC1Q969H9 104 aa13.15□□□□□ -0.3
SNX1-210ENST00000560260 UQCR10Q9UDW1 63 aa13.13□□□□□ -0.31
SNX1-210ENST00000560260 ETDCA0A1B0GVM5 59 aa13.12□□□□□ -0.31
SNX1-210ENST00000560260 C12orf57Q99622 126 aa13.12□□□□□ -0.31
SNX1-210ENST00000560260 PRO1933Q9H354 126 aa13.12□□□□□ -0.31
SNX1-210ENST00000560260 B5MCH6 92 aa13.11□□□□□ -0.31
SNX1-210ENST00000560260 ZNF73O43830 326 aaPredicted RBP13.11□□□□□ -0.31
SNX1-210ENST00000560260 TNXBP22105 4242 aa13.11□□□□□ -0.31
SNX1-210ENST00000560260 A6NDN8 102 aa13.1□□□□□ -0.31
SNX1-210ENST00000560260 KRTAP29-1A8MX34 341 aaPredicted RBP13.1□□□□□ -0.31
SNX1-210ENST00000560260 KRTAP1-4P0C5Y4 121 aa13.1□□□□□ -0.31
SNX1-210ENST00000560260 TAL2Q16559 108 aa13.09□□□□□ -0.31
SNX1-210ENST00000560260 CEND1Q8N111 149 aa13.08□□□□□ -0.32
SNX1-210ENST00000560260 TRAV13-2A0A0B4J235 113 aa13.07□□□□□ -0.32
SNX1-210ENST00000560260 OXTP01178 125 aa13.07□□□□□ -0.32
SNX1-210ENST00000560260 SMCR5Q8TEV8 140 aa13.07□□□□□ -0.32
SNX1-210ENST00000560260 HIGD2AQ9BW72 106 aa13.07□□□□□ -0.32
SNX1-210ENST00000560260 Q6ZRX8 168 aa13.06□□□□□ -0.32
SNX1-210ENST00000560260 MT1HL1P0DM35 61 aa13.05□□□□□ -0.32
SNX1-210ENST00000560260 FXYD2P54710 66 aa13.05□□□□□ -0.32
SNX1-210ENST00000560260 C6orf99Q4VX62 202 aa13.05□□□□□ -0.32
SNX1-210ENST00000560260 LINC01600Q96MT4 127 aa13.05□□□□□ -0.32
SNX1-210ENST00000560260 Q9BRP9 147 aa13.05□□□□□ -0.32
SNX1-210ENST00000560260 CBY1Q9Y3M2 126 aa13.05□□□□□ -0.32
SNX1-210ENST00000560260 HSD52Q0P140 79 aa13.04□□□□□ -0.32
SNX1-210ENST00000560260 CFC1BP0CG36 223 aa13.03□□□□□ -0.32
SNX1-210ENST00000560260 CFC1P0CG37 223 aa13.03□□□□□ -0.32
SNX1-210ENST00000560260 SMIM11BQ8TCY0 68 aa13.03□□□□□ -0.32
SNX1-210ENST00000560260 RPL13AP40429 203 aaKnown RBP13.02□□□□□ -0.33
SNX1-210ENST00000560260 HERC1Q15751 4861 aa13.02□□□□□ -0.33
SNX1-210ENST00000560260 ERC2-IT1O76042 136 aa13.01□□□□□ -0.33
SNX1-210ENST00000560260 A0A0B4J2C4 111 aa12.99□□□□□ -0.33
SNX1-210ENST00000560260 ELOF1P60002 83 aaKnown RBP12.99□□□□□ -0.33
SNX1-210ENST00000560260 ANAPC11Q9NYG5 84 aa12.99□□□□□ -0.33
SNX1-210ENST00000560260 COX7BP24311 80 aa12.97□□□□□ -0.33
SNX1-210ENST00000560260 PRR26Q8N8Z3 221 aa12.97□□□□□ -0.33
SNX1-210ENST00000560260 J3QL48 77 aa12.96□□□□□ -0.33
SNX1-210ENST00000560260 DMBT1Q9UGM3 2413 aaPredicted RBP12.96□□□□□ -0.34
SNX1-210ENST00000560260 HINT1P49773 126 aaPredicted RBP12.95□□□□□ -0.34
SNX1-210ENST00000560260 KRTAP10-8P60410 259 aa12.95□□□□□ -0.34
SNX1-210ENST00000560260 RAB37Q96AX2 223 aa12.95□□□□□ -0.34
SNX1-210ENST00000560260 SPRR4Q96PI1 79 aa12.95□□□□□ -0.34
SNX1-210ENST00000560260 TRBV7-6A0A0J9YX20 115 aa12.94□□□□□ -0.34
SNX1-210ENST00000560260 TMEM238LA0A1B0GVL6 79 aa12.94□□□□□ -0.34
SNX1-210ENST00000560260 A6NJY4 79 aa12.94□□□□□ -0.34
SNX1-210ENST00000560260 A0A087X002 238 aa12.93□□□□□ -0.34
SNX1-210ENST00000560260 A0A1B0GWB2 263 aa12.92□□□□□ -0.34
SNX1-210ENST00000560260 H7C2G1 150 aa12.92□□□□□ -0.34
SNX1-210ENST00000560260 NHP2Q9NX24 153 aaKnown RBP12.91□□□□□ -0.34
SNX1-210ENST00000560260 K7ERJ3 54 aa12.9□□□□□ -0.34
SNX1-210ENST00000560260 BVES-AS1Q5T3Y7 98 aa12.9□□□□□ -0.34
SNX1-210ENST00000560260 ST20-AS1Q8NBB2 130 aa12.9□□□□□ -0.34
SNX1-210ENST00000560260 CTAG1AP78358 180 aa12.89□□□□□ -0.35
SNX1-210ENST00000560260 TSTD3H0UI37 97 aa12.88□□□□□ -0.35
SNX1-210ENST00000560260 KRTAP13-2Q52LG2 175 aa12.88□□□□□ -0.35
SNX1-210ENST00000560260 DHRS4-AS1Q9P1J3 65 aa12.88□□□□□ -0.35
SNX1-210ENST00000560260 PRO1854Q9UHT4 67 aa12.88□□□□□ -0.35
SNX1-210ENST00000560260 ZNF706Q9Y5V0 76 aaPredicted RBP12.88□□□□□ -0.35
SNX1-210ENST00000560260 FAM229BQ4G0N7 80 aa12.88□□□□□ -0.35
SNX1-210ENST00000560260 LINC00483Q53H64 154 aa12.87□□□□□ -0.35
SNX1-210ENST00000560260 CRYGAP11844 174 aa12.86□□□□□ -0.35
SNX1-210ENST00000560260 GAGE2AQ6NT46 116 aa12.86□□□□□ -0.35
SNX1-210ENST00000560260 Q1RN00 199 aa12.83□□□□□ -0.36
SNX1-210ENST00000560260 C3orf22Q8N5N4 141 aa12.83□□□□□ -0.36
SNX1-210ENST00000560260 VAMP3Q15836 100 aa12.82□□□□□ -0.36
SNX1-210ENST00000560260 LINC00575Q6W349 94 aa12.82□□□□□ -0.36
SNX1-210ENST00000560260 TSPAN13O95857 204 aa12.79□□□□□ -0.36
SNX1-210ENST00000560260 M0R143 59 aa12.78□□□□□ -0.36
SNX1-210ENST00000560260 TRIAP1O43715 76 aa12.78□□□□□ -0.36
SNX1-210ENST00000560260 LINC01547P58512 204 aaPredicted RBP12.78□□□□□ -0.36
SNX1-210ENST00000560260 SPRR1BP22528 89 aa12.77□□□□□ -0.37
SNX1-210ENST00000560260 TYMSOSQ8TAI1 123 aa12.77□□□□□ -0.37
SNX1-210ENST00000560260 FAM218AQ96MZ4 157 aa12.76□□□□□ -0.37
SNX1-210ENST00000560260 HMCN2Q8NDA2 5059 aa12.75□□□□□ -0.37
SNX1-210ENST00000560260 IGLV5-48A0A075B6I7 105 aa12.74□□□□□ -0.37
SNX1-210ENST00000560260 hADV29S1A0JD25 119 aa12.74□□□□□ -0.37
SNX1-210ENST00000560260 SLC25A20O43772 301 aa12.73□□□□□ -0.37
SNX1-210ENST00000560260 DEFB105AQ8NG35 78 aa12.73□□□□□ -0.37
SNX1-210ENST00000560260 H0YGX0 51 aa12.71□□□□□ -0.37
SNX1-210ENST00000560260 Q6ZQY7 126 aa12.71□□□□□ -0.37
SNX1-210ENST00000560260 IGLV9-49A0A0B4J1Y8 123 aa12.7□□□□□ -0.38
SNX1-210ENST00000560260 MOBPQ13875 183 aa12.69□□□□□ -0.38
SNX1-210ENST00000560260 Q8N377 158 aa12.69□□□□□ -0.38
SNX1-210ENST00000560260 TEX49A0A1B0GTD5 131 aa12.68□□□□□ -0.38
SNX1-210ENST00000560260 PSMB2P49721 201 aa12.68□□□□□ -0.38
SNX1-210ENST00000560260 SMIM29Q86T20 159 aa12.68□□□□□ -0.38
SNX1-210ENST00000560260 CLEC2BQ92478 149 aa12.68□□□□□ -0.38
SNX1-210ENST00000560260 BATFQ16520 125 aa12.67□□□□□ -0.38
SNX1-210ENST00000560260 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.65□□□□□ -0.38
SNX1-210ENST00000560260 LINC00304Q8N9R0 145 aa12.64□□□□□ -0.39
SNX1-210ENST00000560260 Q8NBF4 154 aa12.64□□□□□ -0.39
SNX1-210ENST00000560260 C9orf153Q5TBE3 101 aa12.63□□□□□ -0.39
SNX1-210ENST00000560260 NAA38Q9BRA0 125 aaKnown RBP12.63□□□□□ -0.39
SNX1-210ENST00000560260 LAMTOR3Q9UHA4 124 aa12.62□□□□□ -0.39
SNX1-210ENST00000560260 A0A1B0GX51 115 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms