RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 BVES-AS1Q5T3Y7 98 aa5.97□□□□□ -1.45
CUX1-216ENST00000558469 TMEM126AQ9H061 195 aa5.97□□□□□ -1.45
CUX1-216ENST00000558469 APOBP04114 4563 aaKnown RBP5.96□□□□□ -1.46
CUX1-216ENST00000558469 RAB37Q96AX2 223 aa5.96□□□□□ -1.46
CUX1-216ENST00000558469 KRTAP9-9Q9BYP9 154 aa5.96□□□□□ -1.46
CUX1-216ENST00000558469 KRTAP9-4Q9BYQ2 154 aa5.96□□□□□ -1.46
CUX1-216ENST00000558469 NHP2Q9NX24 153 aaKnown RBP5.96□□□□□ -1.46
CUX1-216ENST00000558469 PSORS1C2Q9UIG4 136 aa5.96□□□□□ -1.46
CUX1-216ENST00000558469 PCP4L1A6NKN8 68 aa5.95□□□□□ -1.46
CUX1-216ENST00000558469 M0R143 59 aa5.95□□□□□ -1.46
CUX1-216ENST00000558469 REG3GQ6UW15 175 aa5.95□□□□□ -1.46
CUX1-216ENST00000558469 KCNQ1DNQ9H478 68 aa5.95□□□□□ -1.46
CUX1-216ENST00000558469 TRAV23DV6A0A075B6W5 121 aa5.94□□□□□ -1.46
CUX1-216ENST00000558469 A0A0B4J2C4 111 aa5.94□□□□□ -1.46
CUX1-216ENST00000558469 PRYO14603 147 aa5.94□□□□□ -1.46
CUX1-216ENST00000558469 RPL13AP40429 203 aaKnown RBP5.94□□□□□ -1.46
CUX1-216ENST00000558469 RPL37AP61513 92 aaKnown RBP5.94□□□□□ -1.46
CUX1-216ENST00000558469 C1orf137Q5JT78 98 aa5.94□□□□□ -1.46
CUX1-216ENST00000558469 H7C2G1 150 aa5.93□□□□□ -1.46
CUX1-216ENST00000558469 K7ERJ3 54 aa5.93□□□□□ -1.46
CUX1-216ENST00000558469 BATFQ16520 125 aa5.93□□□□□ -1.46
CUX1-216ENST00000558469 PRO1854Q9UHT4 67 aa5.93□□□□□ -1.46
CUX1-216ENST00000558469 CBY1Q9Y3M2 126 aa5.93□□□□□ -1.46
CUX1-216ENST00000558469 A0A1B0GWB2 263 aa5.92□□□□□ -1.46
CUX1-216ENST00000558469 ZNF73O43830 326 aaPredicted RBP5.92□□□□□ -1.46
CUX1-216ENST00000558469 SMIM11BQ8TCY0 68 aa5.92□□□□□ -1.46
CUX1-216ENST00000558469 HSPG2P98160 4391 aa5.91□□□□□ -1.46
CUX1-216ENST00000558469 ETDCA0A1B0GVM5 59 aa5.91□□□□□ -1.46
CUX1-216ENST00000558469 BCE1O60756 84 aa5.91□□□□□ -1.46
CUX1-216ENST00000558469 PLA2G1BP04054 148 aaKnown RBP5.91□□□□□ -1.46
CUX1-216ENST00000558469 Q5VSD8 79 aa5.91□□□□□ -1.46
CUX1-216ENST00000558469 FAM19A1Q7Z5A9 133 aa5.91□□□□□ -1.46
CUX1-216ENST00000558469 Q8N1X5 172 aa5.91□□□□□ -1.46
CUX1-216ENST00000558469 KRTAP17-1Q9BYP8 105 aa5.91□□□□□ -1.46
CUX1-216ENST00000558469 VPS13BQ7Z7G8 4022 aa5.9□□□□□ -1.46
CUX1-216ENST00000558469 SPRR1AP35321 89 aa5.9□□□□□ -1.46
CUX1-216ENST00000558469 UBE2AP49459 152 aa5.9□□□□□ -1.46
CUX1-216ENST00000558469 Q1RN00 199 aa5.9□□□□□ -1.46
CUX1-216ENST00000558469 C6orf99Q4VX62 202 aa5.9□□□□□ -1.46
CUX1-216ENST00000558469 DIRC1Q969H9 104 aa5.9□□□□□ -1.46
CUX1-216ENST00000558469 KRTAP4-16G5E9R7 235 aaPredicted RBP5.89□□□□□ -1.47
CUX1-216ENST00000558469 IGLV7-43P04211 117 aa5.89□□□□□ -1.47
CUX1-216ENST00000558469 PRLHP81277 87 aa5.89□□□□□ -1.47
CUX1-216ENST00000558469 KIAA1109Q2LD37 5005 aa5.89□□□□□ -1.47
CUX1-216ENST00000558469 RYR1P21817 5038 aa5.88□□□□□ -1.47
CUX1-216ENST00000558469 SRRM2Q9UQ35 2752 aaKnown RBP5.88□□□□□ -1.47
CUX1-216ENST00000558469 B5MCH6 92 aa5.88□□□□□ -1.47
CUX1-216ENST00000558469 RPL28P46779 137 aaKnown RBP5.88□□□□□ -1.47
CUX1-216ENST00000558469 KRTAP10-4P60372 401 aaPredicted RBP5.88□□□□□ -1.47
CUX1-216ENST00000558469 SNHG12Q9BXW3 62 aa5.88□□□□□ -1.47
CUX1-216ENST00000558469 TRBV7-6A0A0J9YX20 115 aa5.87□□□□□ -1.47
CUX1-216ENST00000558469 TSPAN13O95857 204 aa5.87□□□□□ -1.47
CUX1-216ENST00000558469 COX7BP24311 80 aa5.87□□□□□ -1.47
CUX1-216ENST00000558469 VAMP3Q15836 100 aa5.87□□□□□ -1.47
CUX1-216ENST00000558469 BIRC6Q9NR09 4857 aa5.87□□□□□ -1.47
CUX1-216ENST00000558469 H0Y9J4 135 aa5.86□□□□□ -1.47
CUX1-216ENST00000558469 ZNF861PO60384 105 aa5.86□□□□□ -1.47
CUX1-216ENST00000558469 PSMB2P49721 201 aa5.86□□□□□ -1.47
CUX1-216ENST00000558469 ELOF1P60002 83 aaKnown RBP5.86□□□□□ -1.47
CUX1-216ENST00000558469 Q6ZRX8 168 aa5.86□□□□□ -1.47
CUX1-216ENST00000558469 KRTAP13-1Q8IUC0 172 aa5.86□□□□□ -1.47
CUX1-216ENST00000558469 TRIAP1O43715 76 aa5.85□□□□□ -1.47
CUX1-216ENST00000558469 HIGD2AQ9BW72 106 aa5.85□□□□□ -1.47
CUX1-216ENST00000558469 SMCR5Q8TEV8 140 aa5.84□□□□□ -1.47
CUX1-216ENST00000558469 NAA38Q9BRA0 125 aaKnown RBP5.84□□□□□ -1.47
CUX1-216ENST00000558469 Q9BRP9 147 aa5.84□□□□□ -1.47
CUX1-216ENST00000558469 KRTAP4-8A0A0G2JLE6 195 aa5.83□□□□□ -1.48
CUX1-216ENST00000558469 SPINK6Q6UWN8 80 aa5.83□□□□□ -1.48
CUX1-216ENST00000558469 DHRS4-AS1Q9P1J3 65 aa5.83□□□□□ -1.48
CUX1-216ENST00000558469 H0YGX0 51 aa5.82□□□□□ -1.48
CUX1-216ENST00000558469 TAX1BP3O14907 124 aa5.82□□□□□ -1.48
CUX1-216ENST00000558469 COX6CP09669 75 aa5.82□□□□□ -1.48
CUX1-216ENST00000558469 INAFM2P0DMQ5 153 aa5.82□□□□□ -1.48
CUX1-216ENST00000558469 SCGB1C2P0DMR2 95 aa5.82□□□□□ -1.48
CUX1-216ENST00000558469 COL5A1-AS1Q5SY13 56 aa5.82□□□□□ -1.48
CUX1-216ENST00000558469 LINC00575Q6W349 94 aa5.82□□□□□ -1.48
CUX1-216ENST00000558469 KRTAP4-5Q9BYR2 181 aa5.82□□□□□ -1.48
CUX1-216ENST00000558469 FAT1Q14517 4588 aa5.82□□□□□ -1.48
CUX1-216ENST00000558469 H3BUT2 72 aa5.81□□□□□ -1.48
CUX1-216ENST00000558469 SLC25A20O43772 301 aa5.81□□□□□ -1.48
CUX1-216ENST00000558469 ERC2-IT1O76042 136 aa5.81□□□□□ -1.48
CUX1-216ENST00000558469 CLEC2BQ92478 149 aa5.81□□□□□ -1.48
CUX1-216ENST00000558469 PKHD1L1Q86WI1 4243 aa5.8□□□□□ -1.48
CUX1-216ENST00000558469 hADV29S1A0JD25 119 aa5.8□□□□□ -1.48
CUX1-216ENST00000558469 C9orf118A6NHY6 69 aa5.8□□□□□ -1.48
CUX1-216ENST00000558469 FAM218AQ96MZ4 157 aa5.8□□□□□ -1.48
CUX1-216ENST00000558469 SNCGO76070 127 aa5.78□□□□□ -1.48
CUX1-216ENST00000558469 ST20-AS1Q8NBB2 130 aa5.78□□□□□ -1.48
CUX1-216ENST00000558469 A0A1W2PPM0 123 aa5.77□□□□□ -1.49
CUX1-216ENST00000558469 DEFB105AQ8NG35 78 aa5.77□□□□□ -1.49
CUX1-216ENST00000558469 SPRR4Q96PI1 79 aa5.77□□□□□ -1.49
CUX1-216ENST00000558469 ZNF706Q9Y5V0 76 aaPredicted RBP5.77□□□□□ -1.49
CUX1-216ENST00000558469 LYRM7Q5U5X0 104 aa5.76□□□□□ -1.49
CUX1-216ENST00000558469 GAGE2AQ6NT46 116 aa5.76□□□□□ -1.49
CUX1-216ENST00000558469 Q6ZQY7 126 aa5.76□□□□□ -1.49
CUX1-216ENST00000558469 ANAPC11Q9NYG5 84 aa5.76□□□□□ -1.49
CUX1-216ENST00000558469 A0A1B0GX51 115 aa5.75□□□□□ -1.49
CUX1-216ENST00000558469 LST1O00453 97 aa5.75□□□□□ -1.49
CUX1-216ENST00000558469 TCL1BO95988 128 aa5.75□□□□□ -1.49
CUX1-216ENST00000558469 FABP2P12104 132 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms