RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 PRYO14603 147 aa6.34□□□□□ -1.39
CCDC88C-213ENST00000557455 C4orf48Q5BLP8 95 aa6.34□□□□□ -1.39
CCDC88C-213ENST00000557455 SLC25A34Q6PIV7 304 aa6.34□□□□□ -1.39
CCDC88C-213ENST00000557455 NCR3O14931 201 aa6.33□□□□□ -1.4
CCDC88C-213ENST00000557455 LCE2AQ5TA79 106 aaPredicted RBP6.33□□□□□ -1.4
CCDC88C-213ENST00000557455 MIR7-3HGQ8N6C7 128 aa6.33□□□□□ -1.4
CCDC88C-213ENST00000557455 LINC00337Q8N6G1 96 aa6.33□□□□□ -1.4
CCDC88C-213ENST00000557455 M0R143 59 aa6.32□□□□□ -1.4
CCDC88C-213ENST00000557455 HERV-K104P63124 156 aa6.32□□□□□ -1.4
CCDC88C-213ENST00000557455 SMCR5Q8TEV8 140 aa6.32□□□□□ -1.4
CCDC88C-213ENST00000557455 KRTAP9-2Q9BYQ4 174 aa6.32□□□□□ -1.4
CCDC88C-213ENST00000557455 KCNQ1DNQ9H478 68 aa6.32□□□□□ -1.4
CCDC88C-213ENST00000557455 ETDCA0A1B0GVM5 59 aa6.31□□□□□ -1.4
CCDC88C-213ENST00000557455 COX8AP10176 69 aa6.31□□□□□ -1.4
CCDC88C-213ENST00000557455 SPRR1AP35321 89 aa6.31□□□□□ -1.4
CCDC88C-213ENST00000557455 FP248Q71RG6 208 aaPredicted RBP6.31□□□□□ -1.4
CCDC88C-213ENST00000557455 DAND5Q8N907 189 aa6.31□□□□□ -1.4
CCDC88C-213ENST00000557455 Q8NBF4 154 aa6.31□□□□□ -1.4
CCDC88C-213ENST00000557455 TRBV10-3A0A0K0K1G6 114 aa6.3□□□□□ -1.4
CCDC88C-213ENST00000557455 MYMXA0A1B0GTQ4 84 aa6.3□□□□□ -1.4
CCDC88C-213ENST00000557455 ANKRD39Q53RE8 183 aa6.3□□□□□ -1.4
CCDC88C-213ENST00000557455 NDUFA12Q9UI09 145 aa6.3□□□□□ -1.4
CCDC88C-213ENST00000557455 KRTAP4-16G5E9R7 235 aaPredicted RBP6.29□□□□□ -1.4
CCDC88C-213ENST00000557455 DLEU1O43261 78 aa6.29□□□□□ -1.4
CCDC88C-213ENST00000557455 NMUP48645 174 aa6.29□□□□□ -1.4
CCDC88C-213ENST00000557455 HERVK_113P61574 105 aa6.29□□□□□ -1.4
CCDC88C-213ENST00000557455 SPINK1P00995 79 aa6.28□□□□□ -1.4
CCDC88C-213ENST00000557455 SNHG12Q9BXW3 62 aa6.28□□□□□ -1.4
CCDC88C-213ENST00000557455 BATFQ16520 125 aa6.27□□□□□ -1.41
CCDC88C-213ENST00000557455 LINC00483Q53H64 154 aa6.27□□□□□ -1.41
CCDC88C-213ENST00000557455 GAGE2AQ6NT46 116 aa6.27□□□□□ -1.41
CCDC88C-213ENST00000557455 B5MCH6 92 aa6.26□□□□□ -1.41
CCDC88C-213ENST00000557455 KRTAP13-3Q3SY46 172 aa6.26□□□□□ -1.41
CCDC88C-213ENST00000557455 IGLV9-49A0A0B4J1Y8 123 aa6.25□□□□□ -1.41
CCDC88C-213ENST00000557455 LOC107984156A0A0G2JMH3 177 aa6.25□□□□□ -1.41
CCDC88C-213ENST00000557455 E9PLD3 99 aa6.25□□□□□ -1.41
CCDC88C-213ENST00000557455 LEPROTO15243 131 aa6.25□□□□□ -1.41
CCDC88C-213ENST00000557455 TSPEAR-AS2P59090 65 aa6.25□□□□□ -1.41
CCDC88C-213ENST00000557455 COL5A1-AS1Q5SY13 56 aa6.25□□□□□ -1.41
CCDC88C-213ENST00000557455 ARL17AQ8IVW1 177 aa6.25□□□□□ -1.41
CCDC88C-213ENST00000557455 TRBV10-2A0A0K0K1G8 114 aa6.24□□□□□ -1.41
CCDC88C-213ENST00000557455 ERC2-IT1O76042 136 aa6.24□□□□□ -1.41
CCDC88C-213ENST00000557455 HINT1P49773 126 aaPredicted RBP6.24□□□□□ -1.41
CCDC88C-213ENST00000557455 MOBPQ13875 183 aa6.24□□□□□ -1.41
CCDC88C-213ENST00000557455 C2orf91Q6ZV80 131 aa6.24□□□□□ -1.41
CCDC88C-213ENST00000557455 PCP2Q8IVA1 136 aa6.24□□□□□ -1.41
CCDC88C-213ENST00000557455 J3QQQ9 107 aa6.23□□□□□ -1.41
CCDC88C-213ENST00000557455 HSD52Q0P140 79 aa6.23□□□□□ -1.41
CCDC88C-213ENST00000557455 Q6ZRX8 168 aa6.23□□□□□ -1.41
CCDC88C-213ENST00000557455 SSBP3-AS1Q7Z2R9 100 aa6.23□□□□□ -1.41
CCDC88C-213ENST00000557455 Q9BRP9 147 aa6.23□□□□□ -1.41
CCDC88C-213ENST00000557455 SPANXB1Q9NS25 103 aaPredicted RBP6.23□□□□□ -1.41
CCDC88C-213ENST00000557455 HIGD1BQ9P298 99 aa6.23□□□□□ -1.41
CCDC88C-213ENST00000557455 RPS29P62273 56 aaKnown RBP6.22□□□□□ -1.41
CCDC88C-213ENST00000557455 ASB16-AS1Q495Z4 193 aa6.22□□□□□ -1.41
CCDC88C-213ENST00000557455 S100A7L2Q5SY68 101 aa6.22□□□□□ -1.41
CCDC88C-213ENST00000557455 LGALS3P17931 250 aaKnown RBP6.21□□□□□ -1.42
CCDC88C-213ENST00000557455 BVES-AS1Q5T3Y7 98 aa6.21□□□□□ -1.42
CCDC88C-213ENST00000557455 Q8N377 158 aa6.21□□□□□ -1.42
CCDC88C-213ENST00000557455 A6NDN8 102 aa6.2□□□□□ -1.42
CCDC88C-213ENST00000557455 ZNF815PA8K554 130 aa6.2□□□□□ -1.42
CCDC88C-213ENST00000557455 SLC25A20O43772 301 aa6.2□□□□□ -1.42
CCDC88C-213ENST00000557455 NDUFC2O95298 119 aa6.2□□□□□ -1.42
CCDC88C-213ENST00000557455 IGLV6-57P01721 117 aa6.2□□□□□ -1.42
CCDC88C-213ENST00000557455 SEC61BP60468 96 aaKnown RBP6.2□□□□□ -1.42
CCDC88C-213ENST00000557455 TRAV23DV6A0A075B6W5 121 aa6.19□□□□□ -1.42
CCDC88C-213ENST00000557455 A0A1B0GV90 55 aa6.19□□□□□ -1.42
CCDC88C-213ENST00000557455 TAL2Q16559 108 aa6.19□□□□□ -1.42
CCDC88C-213ENST00000557455 C9orf153Q5TBE3 101 aa6.19□□□□□ -1.42
CCDC88C-213ENST00000557455 SCGB1D4Q6XE38 83 aa6.19□□□□□ -1.42
CCDC88C-213ENST00000557455 NPC2P61916 151 aa6.18□□□□□ -1.42
CCDC88C-213ENST00000557455 TTTY13Q9BZ97 58 aa6.18□□□□□ -1.42
CCDC88C-213ENST00000557455 ZNF73O43830 326 aaPredicted RBP6.17□□□□□ -1.42
CCDC88C-213ENST00000557455 LINC01547P58512 204 aaPredicted RBP6.17□□□□□ -1.42
CCDC88C-213ENST00000557455 A0A0J9YXY3 114 aa6.16□□□□□ -1.42
CCDC88C-213ENST00000557455 ADAMTSL4-AS1Q5T5F5 129 aa6.16□□□□□ -1.42
CCDC88C-213ENST00000557455 SOSTDC1Q6X4U4 206 aa6.16□□□□□ -1.42
CCDC88C-213ENST00000557455 HIST1H4GQ99525 98 aa6.16□□□□□ -1.42
CCDC88C-213ENST00000557455 KRTAP4-1Q9BYQ7 146 aa6.16□□□□□ -1.42
CCDC88C-213ENST00000557455 KRTAP9-6A0A140TA67 174 aa6.15□□□□□ -1.42
CCDC88C-213ENST00000557455 EIF4EBP3O60516 100 aaPredicted RBP6.15□□□□□ -1.42
CCDC88C-213ENST00000557455 CEND1Q8N111 149 aa6.15□□□□□ -1.42
CCDC88C-213ENST00000557455 ST20-AS1Q8NBB2 130 aa6.15□□□□□ -1.42
CCDC88C-213ENST00000557455 CBY1Q9Y3M2 126 aa6.15□□□□□ -1.42
CCDC88C-213ENST00000557455 TMEM238LA0A1B0GVL6 79 aa6.14□□□□□ -1.43
CCDC88C-213ENST00000557455 A6NJY4 79 aa6.14□□□□□ -1.43
CCDC88C-213ENST00000557455 XP32Q5T750 250 aa6.13□□□□□ -1.43
CCDC88C-213ENST00000557455 TAX1BP3O14907 124 aa6.12□□□□□ -1.43
CCDC88C-213ENST00000557455 OR13C6PQ8NH95 151 aa6.12□□□□□ -1.43
CCDC88C-213ENST00000557455 SPANXCQ9NY87 97 aa6.12□□□□□ -1.43
CCDC88C-213ENST00000557455 FXYD2P54710 66 aa6.11□□□□□ -1.43
CCDC88C-213ENST00000557455 LINC00308Q8TCZ7 52 aa6.11□□□□□ -1.43
CCDC88C-213ENST00000557455 NHP2Q9NX24 153 aaKnown RBP6.11□□□□□ -1.43
CCDC88C-213ENST00000557455 SPRR1BP22528 89 aa6.1□□□□□ -1.43
CCDC88C-213ENST00000557455 HRCT1Q6UXD1 115 aa6.1□□□□□ -1.43
CCDC88C-213ENST00000557455 LITAFQ99732 161 aa6.1□□□□□ -1.43
CCDC88C-213ENST00000557455 LIMD2Q9BT23 127 aa6.1□□□□□ -1.43
CCDC88C-213ENST00000557455 DHRS4-AS1Q9P1J3 65 aa6.1□□□□□ -1.43
CCDC88C-213ENST00000557455 C9orf118A6NHY6 69 aa6.09□□□□□ -1.43
CCDC88C-213ENST00000557455 TIMM17BO60830 172 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms