RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 CBY1Q9Y3M2 126 aa6.88□□□□□ -1.31
CCDC88C-212ENST00000556767 MYCBP2O75592 4640 aa6.88□□□□□ -1.31
CCDC88C-212ENST00000556767 PKHD1L1Q86WI1 4243 aa6.87□□□□□ -1.31
CCDC88C-212ENST00000556767 KRTAP1-4P0C5Y4 121 aa6.87□□□□□ -1.31
CCDC88C-212ENST00000556767 PYY3Q5JQD4 70 aa6.87□□□□□ -1.31
CCDC88C-212ENST00000556767 LRP1Q07954 4544 aaKnown RBP6.87□□□□□ -1.31
CCDC88C-212ENST00000556767 A6NDN8 102 aa6.86□□□□□ -1.31
CCDC88C-212ENST00000556767 ZNF73O43830 326 aaPredicted RBP6.86□□□□□ -1.31
CCDC88C-212ENST00000556767 HINT1P49773 126 aaPredicted RBP6.86□□□□□ -1.31
CCDC88C-212ENST00000556767 HIST1H4GQ99525 98 aa6.86□□□□□ -1.31
CCDC88C-212ENST00000556767 PPDPFQ9H3Y8 114 aa6.86□□□□□ -1.31
CCDC88C-212ENST00000556767 B5MCH6 92 aa6.85□□□□□ -1.31
CCDC88C-212ENST00000556767 KRTAP4-16G5E9R7 235 aaPredicted RBP6.85□□□□□ -1.31
CCDC88C-212ENST00000556767 DLEU1O43261 78 aa6.85□□□□□ -1.31
CCDC88C-212ENST00000556767 KRTAP10-8P60410 259 aa6.85□□□□□ -1.31
CCDC88C-212ENST00000556767 SLC25A34Q6PIV7 304 aa6.85□□□□□ -1.31
CCDC88C-212ENST00000556767 SMCR5Q8TEV8 140 aa6.85□□□□□ -1.31
CCDC88C-212ENST00000556767 ANAPC11Q9NYG5 84 aa6.85□□□□□ -1.31
CCDC88C-212ENST00000556767 FAT3Q8TDW7 4589 aa6.84□□□□□ -1.31
CCDC88C-212ENST00000556767 A4D1N5 150 aa6.83□□□□□ -1.32
CCDC88C-212ENST00000556767 RPL13AP40429 203 aaKnown RBP6.83□□□□□ -1.32
CCDC88C-212ENST00000556767 Q6ZRX8 168 aa6.83□□□□□ -1.32
CCDC88C-212ENST00000556767 ZNF706Q9Y5V0 76 aaPredicted RBP6.83□□□□□ -1.32
CCDC88C-212ENST00000556767 TRAV13-2A0A0B4J235 113 aa6.82□□□□□ -1.32
CCDC88C-212ENST00000556767 CRYGAP11844 174 aa6.82□□□□□ -1.32
CCDC88C-212ENST00000556767 C6orf99Q4VX62 202 aa6.81□□□□□ -1.32
CCDC88C-212ENST00000556767 A0A087X002 238 aa6.8□□□□□ -1.32
CCDC88C-212ENST00000556767 COX7BP24311 80 aa6.8□□□□□ -1.32
CCDC88C-212ENST00000556767 SPRR4Q96PI1 79 aa6.8□□□□□ -1.32
CCDC88C-212ENST00000556767 C12orf57Q99622 126 aa6.8□□□□□ -1.32
CCDC88C-212ENST00000556767 Q9BRP9 147 aa6.8□□□□□ -1.32
CCDC88C-212ENST00000556767 HIGD1BQ9P298 99 aa6.8□□□□□ -1.32
CCDC88C-212ENST00000556767 ERC2-IT1O76042 136 aa6.79□□□□□ -1.32
CCDC88C-212ENST00000556767 FAM229BQ4G0N7 80 aa6.79□□□□□ -1.32
CCDC88C-212ENST00000556767 GAGE2AQ6NT46 116 aa6.79□□□□□ -1.32
CCDC88C-212ENST00000556767 C2orf91Q6ZV80 131 aa6.79□□□□□ -1.32
CCDC88C-212ENST00000556767 TYMSOSQ8TAI1 123 aa6.79□□□□□ -1.32
CCDC88C-212ENST00000556767 SMIM11BQ8TCY0 68 aa6.77□□□□□ -1.33
CCDC88C-212ENST00000556767 ELOF1P60002 83 aaKnown RBP6.76□□□□□ -1.33
CCDC88C-212ENST00000556767 DHRS4-AS1Q9P1J3 65 aa6.76□□□□□ -1.33
CCDC88C-212ENST00000556767 A0A1B0GWB2 263 aa6.75□□□□□ -1.33
CCDC88C-212ENST00000556767 TAL2Q16559 108 aa6.75□□□□□ -1.33
CCDC88C-212ENST00000556767 KRTAP13-2Q52LG2 175 aa6.75□□□□□ -1.33
CCDC88C-212ENST00000556767 RAB37Q96AX2 223 aa6.75□□□□□ -1.33
CCDC88C-212ENST00000556767 UQCR10Q9UDW1 63 aa6.75□□□□□ -1.33
CCDC88C-212ENST00000556767 TRBV7-6A0A0J9YX20 115 aa6.74□□□□□ -1.33
CCDC88C-212ENST00000556767 H7C2G1 150 aa6.74□□□□□ -1.33
CCDC88C-212ENST00000556767 VAMP3Q15836 100 aa6.74□□□□□ -1.33
CCDC88C-212ENST00000556767 CEND1Q8N111 149 aa6.74□□□□□ -1.33
CCDC88C-212ENST00000556767 C3orf22Q8N5N4 141 aa6.74□□□□□ -1.33
CCDC88C-212ENST00000556767 ST20-AS1Q8NBB2 130 aa6.74□□□□□ -1.33
CCDC88C-212ENST00000556767 IGLV9-49A0A0B4J1Y8 123 aa6.72□□□□□ -1.33
CCDC88C-212ENST00000556767 TMEM238LA0A1B0GVL6 79 aa6.72□□□□□ -1.33
CCDC88C-212ENST00000556767 A6NJY4 79 aa6.72□□□□□ -1.33
CCDC88C-212ENST00000556767 TSPAN13O95857 204 aa6.72□□□□□ -1.33
CCDC88C-212ENST00000556767 CFC1BP0CG36 223 aa6.72□□□□□ -1.33
CCDC88C-212ENST00000556767 CFC1P0CG37 223 aa6.72□□□□□ -1.33
CCDC88C-212ENST00000556767 HSD52Q0P140 79 aa6.72□□□□□ -1.33
CCDC88C-212ENST00000556767 LINC00483Q53H64 154 aa6.72□□□□□ -1.33
CCDC88C-212ENST00000556767 HERC1Q15751 4861 aa6.71□□□□□ -1.33
CCDC88C-212ENST00000556767 A0A0B4J2C4 111 aa6.71□□□□□ -1.34
CCDC88C-212ENST00000556767 SLC25A20O43772 301 aa6.71□□□□□ -1.34
CCDC88C-212ENST00000556767 Q1RN00 199 aa6.71□□□□□ -1.34
CCDC88C-212ENST00000556767 LINC00304Q8N9R0 145 aa6.71□□□□□ -1.34
CCDC88C-212ENST00000556767 DEFB105AQ8NG35 78 aa6.71□□□□□ -1.34
CCDC88C-212ENST00000556767 PRO1933Q9H354 126 aa6.71□□□□□ -1.34
CCDC88C-212ENST00000556767 NHP2Q9NX24 153 aaKnown RBP6.71□□□□□ -1.34
CCDC88C-212ENST00000556767 SMIM6P0DI80 62 aa6.7□□□□□ -1.34
CCDC88C-212ENST00000556767 FXYD2P54710 66 aa6.7□□□□□ -1.34
CCDC88C-212ENST00000556767 TNXBP22105 4242 aa6.69□□□□□ -1.34
CCDC88C-212ENST00000556767 MOBPQ13875 183 aa6.69□□□□□ -1.34
CCDC88C-212ENST00000556767 C9orf153Q5TBE3 101 aa6.69□□□□□ -1.34
CCDC88C-212ENST00000556767 C4orf48Q5BLP8 95 aa6.68□□□□□ -1.34
CCDC88C-212ENST00000556767 BVES-AS1Q5T3Y7 98 aa6.68□□□□□ -1.34
CCDC88C-212ENST00000556767 Q8NBF4 154 aa6.68□□□□□ -1.34
CCDC88C-212ENST00000556767 PRO1854Q9UHT4 67 aa6.68□□□□□ -1.34
CCDC88C-212ENST00000556767 LINC00575Q6W349 94 aa6.67□□□□□ -1.34
CCDC88C-212ENST00000556767 LAMTOR3Q9UHA4 124 aa6.67□□□□□ -1.34
CCDC88C-212ENST00000556767 TEX49A0A1B0GTD5 131 aa6.66□□□□□ -1.34
CCDC88C-212ENST00000556767 LOC105371267A0A1B0GV96 52 aa6.66□□□□□ -1.34
CCDC88C-212ENST00000556767 hADV29S1A0JD25 119 aa6.66□□□□□ -1.34
CCDC88C-212ENST00000556767 SPRR1BP22528 89 aa6.66□□□□□ -1.34
CCDC88C-212ENST00000556767 K7ERJ3 54 aa6.65□□□□□ -1.34
CCDC88C-212ENST00000556767 SSBP3-AS1Q7Z2R9 100 aa6.65□□□□□ -1.34
CCDC88C-212ENST00000556767 SPAG11AQ6PDA7 123 aa6.64□□□□□ -1.35
CCDC88C-212ENST00000556767 H0YGX0 51 aa6.63□□□□□ -1.35
CCDC88C-212ENST00000556767 SNCGO76070 127 aa6.63□□□□□ -1.35
CCDC88C-212ENST00000556767 PRR4Q16378 134 aa6.63□□□□□ -1.35
CCDC88C-212ENST00000556767 LCE2DQ5TA82 110 aaPredicted RBP6.63□□□□□ -1.35
CCDC88C-212ENST00000556767 Q6ZQY7 126 aa6.63□□□□□ -1.35
CCDC88C-212ENST00000556767 IGLV5-48A0A075B6I7 105 aa6.62□□□□□ -1.35
CCDC88C-212ENST00000556767 PSMB2P49721 201 aa6.62□□□□□ -1.35
CCDC88C-212ENST00000556767 TSTD3H0UI37 97 aa6.61□□□□□ -1.35
CCDC88C-212ENST00000556767 LINC01547P58512 204 aaPredicted RBP6.61□□□□□ -1.35
CCDC88C-212ENST00000556767 CTAG1AP78358 180 aa6.61□□□□□ -1.35
CCDC88C-212ENST00000556767 Q8N377 158 aa6.61□□□□□ -1.35
CCDC88C-212ENST00000556767 RETNLBQ9BQ08 111 aa6.61□□□□□ -1.35
CCDC88C-212ENST00000556767 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.6□□□□□ -1.35
CCDC88C-212ENST00000556767 F8WEM9 126 aa6.59□□□□□ -1.35
CCDC88C-212ENST00000556767 M0R143 59 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms