RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 PRLHP81277 87 aa8.59□□□□□ -1.03
VIPAS39-208ENST00000556412 ETDCA0A1B0GVM5 59 aa8.59□□□□□ -1.03
VIPAS39-208ENST00000556412 M0R143 59 aa8.59□□□□□ -1.03
VIPAS39-208ENST00000556412 RPL28P46779 137 aaKnown RBP8.58□□□□□ -1.04
VIPAS39-208ENST00000556412 SRRM2Q9UQ35 2752 aaKnown RBP8.57□□□□□ -1.04
VIPAS39-208ENST00000556412 TMEM238LA0A1B0GVL6 79 aa8.57□□□□□ -1.04
VIPAS39-208ENST00000556412 A6NJY4 79 aa8.57□□□□□ -1.04
VIPAS39-208ENST00000556412 ZNF73O43830 326 aaPredicted RBP8.57□□□□□ -1.04
VIPAS39-208ENST00000556412 ZNF861PO60384 105 aa8.57□□□□□ -1.04
VIPAS39-208ENST00000556412 FXYD2P54710 66 aa8.57□□□□□ -1.04
VIPAS39-208ENST00000556412 RAB37Q96AX2 223 aa8.57□□□□□ -1.04
VIPAS39-208ENST00000556412 SNHG12Q9BXW3 62 aa8.57□□□□□ -1.04
VIPAS39-208ENST00000556412 SPINK6Q6UWN8 80 aa8.57□□□□□ -1.04
VIPAS39-208ENST00000556412 SPRR1AP35321 89 aa8.56□□□□□ -1.04
VIPAS39-208ENST00000556412 RPL13AP40429 203 aaKnown RBP8.56□□□□□ -1.04
VIPAS39-208ENST00000556412 H7C2G1 150 aa8.55□□□□□ -1.04
VIPAS39-208ENST00000556412 CFC1BP0CG36 223 aa8.55□□□□□ -1.04
VIPAS39-208ENST00000556412 CFC1P0CG37 223 aa8.55□□□□□ -1.04
VIPAS39-208ENST00000556412 DIRC1Q969H9 104 aa8.55□□□□□ -1.04
VIPAS39-208ENST00000556412 HIGD2AQ9BW72 106 aa8.55□□□□□ -1.04
VIPAS39-208ENST00000556412 HINT1P49773 126 aaPredicted RBP8.54□□□□□ -1.04
VIPAS39-208ENST00000556412 C6orf99Q4VX62 202 aa8.54□□□□□ -1.04
VIPAS39-208ENST00000556412 NHP2Q9NX24 153 aaKnown RBP8.54□□□□□ -1.04
VIPAS39-208ENST00000556412 KRTAP4-16G5E9R7 235 aaPredicted RBP8.53□□□□□ -1.04
VIPAS39-208ENST00000556412 PCP4P48539 62 aa8.53□□□□□ -1.04
VIPAS39-208ENST00000556412 KRTAP13-1Q8IUC0 172 aa8.53□□□□□ -1.04
VIPAS39-208ENST00000556412 SMIM11BQ8TCY0 68 aa8.53□□□□□ -1.04
VIPAS39-208ENST00000556412 A0A0B4J2C4 111 aa8.52□□□□□ -1.04
VIPAS39-208ENST00000556412 B5MCH6 92 aa8.52□□□□□ -1.04
VIPAS39-208ENST00000556412 VPS13BQ7Z7G8 4022 aa8.52□□□□□ -1.05
VIPAS39-208ENST00000556412 H0Y9J4 135 aa8.52□□□□□ -1.05
VIPAS39-208ENST00000556412 ABCA13Q86UQ4 5058 aa8.51□□□□□ -1.05
VIPAS39-208ENST00000556412 K7ERJ3 54 aa8.51□□□□□ -1.05
VIPAS39-208ENST00000556412 Q1RN00 199 aa8.51□□□□□ -1.05
VIPAS39-208ENST00000556412 Q6ZRX8 168 aa8.51□□□□□ -1.05
VIPAS39-208ENST00000556412 BVES-AS1Q5T3Y7 98 aa8.5□□□□□ -1.05
VIPAS39-208ENST00000556412 COX7BP24311 80 aa8.5□□□□□ -1.05
VIPAS39-208ENST00000556412 PRO1854Q9UHT4 67 aa8.5□□□□□ -1.05
VIPAS39-208ENST00000556412 C21orf62-AS1Q17RA5 79 aa8.49□□□□□ -1.05
VIPAS39-208ENST00000556412 ELOF1P60002 83 aaKnown RBP8.47□□□□□ -1.05
VIPAS39-208ENST00000556412 SMCR5Q8TEV8 140 aa8.47□□□□□ -1.05
VIPAS39-208ENST00000556412 Q9BRP9 147 aa8.47□□□□□ -1.05
VIPAS39-208ENST00000556412 VAMP3Q15836 100 aa8.47□□□□□ -1.05
VIPAS39-208ENST00000556412 BATFQ16520 125 aa8.46□□□□□ -1.06
VIPAS39-208ENST00000556412 A0A1B0GWB2 263 aa8.45□□□□□ -1.06
VIPAS39-208ENST00000556412 ERC2-IT1O76042 136 aa8.45□□□□□ -1.06
VIPAS39-208ENST00000556412 TRBV7-6A0A0J9YX20 115 aa8.45□□□□□ -1.06
VIPAS39-208ENST00000556412 COL5A1-AS1Q5SY13 56 aa8.45□□□□□ -1.06
VIPAS39-208ENST00000556412 DHRS4-AS1Q9P1J3 65 aa8.44□□□□□ -1.06
VIPAS39-208ENST00000556412 ANAPC11Q9NYG5 84 aa8.43□□□□□ -1.06
VIPAS39-208ENST00000556412 PCLOQ9Y6V0 5065 aa8.42□□□□□ -1.06
VIPAS39-208ENST00000556412 PSMB2P49721 201 aa8.42□□□□□ -1.06
VIPAS39-208ENST00000556412 ZNF706Q9Y5V0 76 aaPredicted RBP8.42□□□□□ -1.06
VIPAS39-208ENST00000556412 TSPAN13O95857 204 aa8.41□□□□□ -1.06
VIPAS39-208ENST00000556412 KRTAP1-4P0C5Y4 121 aa8.41□□□□□ -1.06
VIPAS39-208ENST00000556412 SLC25A20O43772 301 aa8.4□□□□□ -1.06
VIPAS39-208ENST00000556412 GAGE2AQ6NT46 116 aa8.4□□□□□ -1.06
VIPAS39-208ENST00000556412 ST20-AS1Q8NBB2 130 aa8.4□□□□□ -1.06
VIPAS39-208ENST00000556412 SPRR4Q96PI1 79 aa8.4□□□□□ -1.06
VIPAS39-208ENST00000556412 TRIAP1O43715 76 aa8.4□□□□□ -1.07
VIPAS39-208ENST00000556412 OXTP01178 125 aa8.39□□□□□ -1.07
VIPAS39-208ENST00000556412 PRR26Q8N8Z3 221 aa8.39□□□□□ -1.07
VIPAS39-208ENST00000556412 LINC01600Q96MT4 127 aa8.39□□□□□ -1.07
VIPAS39-208ENST00000556412 FLG2Q5D862 2391 aaPredicted RBP8.39□□□□□ -1.07
VIPAS39-208ENST00000556412 J3QL48 77 aa8.38□□□□□ -1.07
VIPAS39-208ENST00000556412 LINC00575Q6W349 94 aa8.38□□□□□ -1.07
VIPAS39-208ENST00000556412 DEFB105AQ8NG35 78 aa8.38□□□□□ -1.07
VIPAS39-208ENST00000556412 hADV29S1A0JD25 119 aa8.37□□□□□ -1.07
VIPAS39-208ENST00000556412 KRTAP29-1A8MX34 341 aaPredicted RBP8.37□□□□□ -1.07
VIPAS39-208ENST00000556412 MYCBP2O75592 4640 aa8.37□□□□□ -1.07
VIPAS39-208ENST00000556412 H0YGX0 51 aa8.36□□□□□ -1.07
VIPAS39-208ENST00000556412 A0A087X002 238 aa8.36□□□□□ -1.07
VIPAS39-208ENST00000556412 COX6CP09669 75 aa8.36□□□□□ -1.07
VIPAS39-208ENST00000556412 CRYGAP11844 174 aa8.36□□□□□ -1.07
VIPAS39-208ENST00000556412 NAA38Q9BRA0 125 aaKnown RBP8.36□□□□□ -1.07
VIPAS39-208ENST00000556412 SCGB1C2P0DMR2 95 aa8.34□□□□□ -1.07
VIPAS39-208ENST00000556412 CLEC2BQ92478 149 aa8.34□□□□□ -1.07
VIPAS39-208ENST00000556412 FAM218AQ96MZ4 157 aa8.34□□□□□ -1.07
VIPAS39-208ENST00000556412 PKHD1L1Q86WI1 4243 aa8.34□□□□□ -1.07
VIPAS39-208ENST00000556412 SNCGO76070 127 aa8.33□□□□□ -1.08
VIPAS39-208ENST00000556412 FAM229BQ4G0N7 80 aa8.33□□□□□ -1.08
VIPAS39-208ENST00000556412 Q6ZQY7 126 aa8.33□□□□□ -1.08
VIPAS39-208ENST00000556412 LRP1Q07954 4544 aaKnown RBP8.32□□□□□ -1.08
VIPAS39-208ENST00000556412 LINC00483Q53H64 154 aa8.32□□□□□ -1.08
VIPAS39-208ENST00000556412 MT1HL1P0DM35 61 aa8.31□□□□□ -1.08
VIPAS39-208ENST00000556412 TYMSOSQ8TAI1 123 aa8.31□□□□□ -1.08
VIPAS39-208ENST00000556412 IGLV9-49A0A0B4J1Y8 123 aa8.31□□□□□ -1.08
VIPAS39-208ENST00000556412 TEX49A0A1B0GTD5 131 aa8.3□□□□□ -1.08
VIPAS39-208ENST00000556412 KRTAP13-2Q52LG2 175 aa8.3□□□□□ -1.08
VIPAS39-208ENST00000556412 C3orf22Q8N5N4 141 aa8.3□□□□□ -1.08
VIPAS39-208ENST00000556412 KRTAP10-8P60410 259 aa8.29□□□□□ -1.08
VIPAS39-208ENST00000556412 UBE2V1Q13404 147 aa8.29□□□□□ -1.08
VIPAS39-208ENST00000556412 SVIPQ8NHG7 77 aa8.29□□□□□ -1.08
VIPAS39-208ENST00000556412 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.29□□□□□ -1.08
VIPAS39-208ENST00000556412 IGLV5-48A0A075B6I7 105 aa8.28□□□□□ -1.08
VIPAS39-208ENST00000556412 H3BUT2 72 aa8.28□□□□□ -1.08
VIPAS39-208ENST00000556412 LINC01547P58512 204 aaPredicted RBP8.28□□□□□ -1.08
VIPAS39-208ENST00000556412 C9orf153Q5TBE3 101 aa8.28□□□□□ -1.08
VIPAS39-208ENST00000556412 DNAL4O96015 105 aa8.27□□□□□ -1.09
VIPAS39-208ENST00000556412 SPRR1BP22528 89 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms