RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 MYO7BQ6PIF6 2116 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 KTN1-AS1Q86SY8 53 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 TEN1Q86WV5 123 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 Q8IZM0 81 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 FAM19A2Q8N3H0 131 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 ANKRD29Q8N6D5 301 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 RPL39LQ96EH5 51 aaKnown RBP0.9□□□□□ -2.27
LIMA1-209ENST00000552008 WFDC10AQ9H1F0 79 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 PRO1933Q9H354 126 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 MRPL35Q9NZE8 188 aaKnown RBP0.9□□□□□ -2.27
LIMA1-209ENST00000552008 NDUFA12Q9UI09 145 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 ERG28Q9UKR5 140 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 LRRK2Q5S007 2527 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 UNC79Q9P2D8 2635 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 CFAP46Q8IYW2 2715 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 DOCK10Q96BY6 2186 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 ICE1Q9Y2F5 2266 aa0.9□□□□□ -2.27
LIMA1-209ENST00000552008 USP9YO00507 2555 aaPredicted RBP0.9□□□□□ -2.27
LIMA1-209ENST00000552008 GCN1Q92616 2671 aaKnown RBP0.9□□□□□ -2.27
LIMA1-209ENST00000552008 MED12LQ86YW9 2145 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 CNTRLQ7Z7A1 2325 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 LAMA5O15230 3695 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 COL12A1Q99715 3063 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 TENM4Q6N022 2769 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 SPTAN1Q13813 2472 aaKnown RBP0.89□□□□□ -2.27
LIMA1-209ENST00000552008 SPTBN2O15020 2390 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 MALRD1Q5VYJ5 2156 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 GVQW2A0A096LPI5 108 aaPredicted RBP0.89□□□□□ -2.27
LIMA1-209ENST00000552008 LOC107984156A0A0G2JMH3 177 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 ETDCA0A1B0GVM5 59 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 hADV29S1A0JD25 119 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 JMJD7-PLA2G4BH0Y9G9 81 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 TMEM256-PLSCR3K7ERE1 68 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 M0R378 163 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 NDUFB1O75438 58 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 TRACP01848 142 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 SPINK8P0C7L1 97 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 PDE6GP18545 87 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 RPL28P46779 137 aaKnown RBP0.89□□□□□ -2.27
LIMA1-209ENST00000552008 UBE2D1P51668 147 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 RPL39P62891 51 aaKnown RBP0.89□□□□□ -2.27
LIMA1-209ENST00000552008 PCOTHQ58A44 107 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 C9orf153Q5TBE3 101 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 C5orf38Q86SI9 138 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 ARL17AQ8IVW1 177 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 AMELXQ99217 191 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 XAGE1AQ9HD64 81 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 PRO2289Q9P1D8 64 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 PRO1854Q9UHT4 67 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 APLNQ9ULZ1 77 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 CENPEQ02224 2701 aa0.89□□□□□ -2.27
LIMA1-209ENST00000552008 HELZ2Q9BYK8 2649 aaKnown RBP0.89□□□□□ -2.27
LIMA1-209ENST00000552008 CELSR2Q9HCU4 2923 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 DOCK11Q5JSL3 2073 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 ZFHX4Q86UP3 3567 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 FLNCQ14315 2725 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 DCHS1Q96JQ0 3298 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 MYO9AB2RTY4 2548 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 ABCA2Q9BZC7 2435 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 ADGRG4Q8IZF6 3080 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 DNAJC13O75165 2243 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 CR1P17927 2039 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 APCP25054 2843 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 TRBV7-6A0A0J9YX20 115 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 TRBV10-3A0A0K0K1G6 114 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 TRBV10-2A0A0K0K1G8 114 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 H3BUT2 72 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 H7C2G1 150 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 M0R2N4 97 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 NUPR1O60356 82 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 PRM2P04554 102 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 PRB4P10163 310 aaPredicted RBP0.88□□□□□ -2.27
LIMA1-209ENST00000552008 NPC2P61916 151 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 CLPSL2Q6UWE3 100 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 Q6ZUT4 128 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 LINC00643Q86TS7 51 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 COA5Q86WW8 74 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 Q8N814 137 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 ZNF625Q96I27 306 aaPredicted RBP0.88□□□□□ -2.27
LIMA1-209ENST00000552008 DSCR8Q96T75 97 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 UBL5Q9BZL1 73 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 TP73-AS1Q9UF72 201 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 CDKN2A-AS1Q9UH64 79 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 INTS1Q8N201 2190 aaKnown RBP0.88□□□□□ -2.27
LIMA1-209ENST00000552008 ANKRD17O75179 2603 aaKnown RBP0.88□□□□□ -2.27
LIMA1-209ENST00000552008 HECTD1Q9ULT8 2610 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 ASH1LQ9NR48 2969 aaKnown RBP0.88□□□□□ -2.27
LIMA1-209ENST00000552008 LRBAP50851 2863 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 CREBBPQ92793 2442 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 LOC400499M0QZD8 3231 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 TACC2O95359 2948 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 OTOGQ6ZRI0 2925 aa0.88□□□□□ -2.27
LIMA1-209ENST00000552008 HEATR1Q9H583 2144 aaKnown RBP0.88□□□□□ -2.27
LIMA1-209ENST00000552008 CACNA1CQ13936 2221 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 USF3Q68DE3 2245 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 TRAV7A0A075B6U4 112 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 TRAV23DV6A0A075B6W5 121 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 A0A087WTM6 91 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 TRBV7-7A0A0K0K1E9 115 aa0.87□□□□□ -2.27
LIMA1-209ENST00000552008 LCE6AA0A183 80 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms