RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 REG3GQ6UW15 175 aa10.12□□□□□ -0.79
CUX1-214ENST00000550008 Q8N9L7 120 aa10.12□□□□□ -0.79
CUX1-214ENST00000550008 ATP5EP56381 51 aaPredicted RBP10.12□□□□□ -0.79
CUX1-214ENST00000550008 PRR4Q16378 134 aa10.1□□□□□ -0.79
CUX1-214ENST00000550008 FAM104AQ969W3 186 aa10.1□□□□□ -0.79
CUX1-214ENST00000550008 NIPBLQ6KC79 2804 aaeCLIP10.1□□□□□ -0.79
CUX1-214ENST00000550008 TRAV7A0A075B6U4 112 aa10.09□□□□□ -0.79
CUX1-214ENST00000550008 Q6ZVQ6 151 aa10.09□□□□□ -0.79
CUX1-214ENST00000550008 PRO0628Q9UI54 55 aa10.09□□□□□ -0.79
CUX1-214ENST00000550008 KIAA0087Q14695 138 aa10.09□□□□□ -0.79
CUX1-214ENST00000550008 LINC00167Q96N53 147 aa10.08□□□□□ -0.8
CUX1-214ENST00000550008 NUPR2A6NF83 97 aa10.08□□□□□ -0.8
CUX1-214ENST00000550008 CRYGAP11844 174 aa10.08□□□□□ -0.8
CUX1-214ENST00000550008 FAM19A3Q7Z5A8 133 aa10.08□□□□□ -0.8
CUX1-214ENST00000550008 NHLRC4P0CG21 123 aaPredicted RBP10.07□□□□□ -0.8
CUX1-214ENST00000550008 Q6ZRP5 223 aa10.07□□□□□ -0.8
CUX1-214ENST00000550008 MXRA5Q9NR99 2828 aa10.07□□□□□ -0.8
CUX1-214ENST00000550008 SMG1Q96Q15 3661 aaKnown RBP10.07□□□□□ -0.8
CUX1-214ENST00000550008 LINC00612Q8N6U2 182 aa10.07□□□□□ -0.8
CUX1-214ENST00000550008 RPS28P62857 69 aaKnown RBP10.06□□□□□ -0.8
CUX1-214ENST00000550008 FAM30AQ9NZY2 134 aa10.06□□□□□ -0.8
CUX1-214ENST00000550008 H3BNG1 76 aa10.05□□□□□ -0.8
CUX1-214ENST00000550008 A0A087WSZ3 146 aa10.05□□□□□ -0.8
CUX1-214ENST00000550008 MDFIQ99750 246 aa10.05□□□□□ -0.8
CUX1-214ENST00000550008 FAM168BA1KXE4 195 aa10.04□□□□□ -0.8
CUX1-214ENST00000550008 K7EIL1 84 aa10.04□□□□□ -0.8
CUX1-214ENST00000550008 C4orf48Q5BLP8 95 aa10.04□□□□□ -0.8
CUX1-214ENST00000550008 CHTF8P0CG12 524 aa10.03□□□□□ -0.8
CUX1-214ENST00000550008 LINC01547P58512 204 aaPredicted RBP10.03□□□□□ -0.8
CUX1-214ENST00000550008 IGKV4-1P06312 121 aa10.02□□□□□ -0.81
CUX1-214ENST00000550008 SEC61GP60059 68 aa10.02□□□□□ -0.81
CUX1-214ENST00000550008 Q9BRP9 147 aa10.01□□□□□ -0.81
CUX1-214ENST00000550008 PMAIP1Q13794 54 aa10.01□□□□□ -0.81
CUX1-214ENST00000550008 PRR34Q9NV39 138 aa10.01□□□□□ -0.81
CUX1-214ENST00000550008 ST20-AS1Q8NBB2 130 aa10□□□□□ -0.81
CUX1-214ENST00000550008 PRYO14603 147 aa10□□□□□ -0.81
CUX1-214ENST00000550008 VPREB1P12018 145 aa10□□□□□ -0.81
CUX1-214ENST00000550008 SMCR5Q8TEV8 140 aa10□□□□□ -0.81
CUX1-214ENST00000550008 C9orf129Q5T035 196 aaKnown RBP9.99□□□□□ -0.81
CUX1-214ENST00000550008 CSMD1Q96PZ7 3565 aa9.99□□□□□ -0.81
CUX1-214ENST00000550008 SERTAD4-AS1Q5TG53 156 aa9.99□□□□□ -0.81
CUX1-214ENST00000550008 LINC00474Q9P2X8 69 aa9.99□□□□□ -0.81
CUX1-214ENST00000550008 KMT2BQ9UMN6 2715 aaPredicted RBP9.98□□□□□ -0.81
CUX1-214ENST00000550008 CELSR1Q9NYQ6 3014 aa9.98□□□□□ -0.81
CUX1-214ENST00000550008 ELOF1P60002 83 aaKnown RBP9.98□□□□□ -0.81
CUX1-214ENST00000550008 IGLV5-52A0A0A0MRZ9 124 aa9.98□□□□□ -0.81
CUX1-214ENST00000550008 TRBV7-6A0A0J9YX20 115 aa9.97□□□□□ -0.81
CUX1-214ENST00000550008 CHKB-CPT1BH3BT56 60 aa9.97□□□□□ -0.81
CUX1-214ENST00000550008 PHF5AQ7RTV0 110 aaKnown RBP9.97□□□□□ -0.81
CUX1-214ENST00000550008 A6NED7 52 aa9.96□□□□□ -0.81
CUX1-214ENST00000550008 CASC10Q5T4H9 136 aa9.96□□□□□ -0.81
CUX1-214ENST00000550008 C15orf56Q8N910 161 aa9.96□□□□□ -0.81
CUX1-214ENST00000550008 DNAH10OSP0CZ25 163 aa9.96□□□□□ -0.81
CUX1-214ENST00000550008 GVQW2A0A096LPI5 108 aaPredicted RBP9.95□□□□□ -0.82
CUX1-214ENST00000550008 IGLV6-57P01721 117 aa9.95□□□□□ -0.82
CUX1-214ENST00000550008 STAB2Q8WWQ8 2551 aa9.95□□□□□ -0.82
CUX1-214ENST00000550008 F8WDY8 70 aa9.95□□□□□ -0.82
CUX1-214ENST00000550008 PSPHP1O15172 72 aa9.94□□□□□ -0.82
CUX1-214ENST00000550008 Q6ZQT0 140 aa9.93□□□□□ -0.82
CUX1-214ENST00000550008 CIRBP-AS1Q8TBR5 109 aa9.93□□□□□ -0.82
CUX1-214ENST00000550008 C1orf134Q5TEV5 83 aa9.93□□□□□ -0.82
CUX1-214ENST00000550008 Q6ZRX8 168 aa9.91□□□□□ -0.82
CUX1-214ENST00000550008 TMEM254Q8TBM7 123 aa9.91□□□□□ -0.82
CUX1-214ENST00000550008 SVEP1Q4LDE5 3571 aa9.91□□□□□ -0.82
CUX1-214ENST00000550008 CUBNO60494 3623 aa9.89□□□□□ -0.83
CUX1-214ENST00000550008 NBDYA0A0U1RRE5 68 aa9.88□□□□□ -0.83
CUX1-214ENST00000550008 LINC00208Q96KT6 92 aa9.88□□□□□ -0.83
CUX1-214ENST00000550008 A0A0G2JQZ4 141 aa9.88□□□□□ -0.83
CUX1-214ENST00000550008 A0A1W2PNN7 141 aa9.88□□□□□ -0.83
CUX1-214ENST00000550008 ZNF706Q9Y5V0 76 aaPredicted RBP9.87□□□□□ -0.83
CUX1-214ENST00000550008 IGHV6-1A0A0B4J1U7 121 aa9.86□□□□□ -0.83
CUX1-214ENST00000550008 LINC00528Q8N1L1 170 aa9.84□□□□□ -0.83
CUX1-214ENST00000550008 LINC00476Q8WZB0 136 aa9.84□□□□□ -0.83
CUX1-214ENST00000550008 EPM2AB3EWF7 344 aa9.84□□□□□ -0.83
CUX1-214ENST00000550008 C16orf90A8MZG2 172 aa9.83□□□□□ -0.84
CUX1-214ENST00000550008 SMIM29Q86T20 159 aa9.82□□□□□ -0.84
CUX1-214ENST00000550008 CXCL6P80162 114 aa9.81□□□□□ -0.84
CUX1-214ENST00000550008 CASC2Q6XLA1 102 aa9.81□□□□□ -0.84
CUX1-214ENST00000550008 TM2D3Q9BRN9 247 aa9.81□□□□□ -0.84
CUX1-214ENST00000550008 PRR15LQ9BU68 103 aa9.81□□□□□ -0.84
CUX1-214ENST00000550008 LOC110117498A0A087WWA1 95 aa9.8□□□□□ -0.84
CUX1-214ENST00000550008 Q8NBF4 154 aa9.8□□□□□ -0.84
CUX1-214ENST00000550008 LINC00336Q6ZUF6 198 aa9.79□□□□□ -0.84
CUX1-214ENST00000550008 TENM4Q6N022 2769 aa9.79□□□□□ -0.84
CUX1-214ENST00000550008 IGLV1-50A0A075B6I6 118 aa9.79□□□□□ -0.84
CUX1-214ENST00000550008 Q8NDZ9 215 aa9.79□□□□□ -0.84
CUX1-214ENST00000550008 RETNLBQ9BQ08 111 aa9.79□□□□□ -0.84
CUX1-214ENST00000550008 MOBPQ13875 183 aa9.79□□□□□ -0.84
CUX1-214ENST00000550008 KCNQ1DNQ9H478 68 aa9.79□□□□□ -0.84
CUX1-214ENST00000550008 RPL37AP61513 92 aaKnown RBP9.77□□□□□ -0.84
CUX1-214ENST00000550008 PCOTHQ58A44 107 aa9.77□□□□□ -0.84
CUX1-214ENST00000550008 RTL8CO15255 209 aa9.77□□□□□ -0.85
CUX1-214ENST00000550008 HCG22E2RYF7 251 aa9.76□□□□□ -0.85
CUX1-214ENST00000550008 Q8N377 158 aa9.76□□□□□ -0.85
CUX1-214ENST00000550008 ERC2-IT1O76042 136 aa9.75□□□□□ -0.85
CUX1-214ENST00000550008 BCE1O60756 84 aa9.71□□□□□ -0.86
CUX1-214ENST00000550008 H0Y9P7 68 aa9.7□□□□□ -0.86
CUX1-214ENST00000550008 WIPF1O43516 503 aa9.69□□□□□ -0.86
CUX1-214ENST00000550008 ANAPC11Q9NYG5 84 aa9.68□□□□□ -0.86
CUX1-214ENST00000550008 K7EQZ3 153 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms