RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 TSPAN13O95857 204 aa4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 RPL13AP40429 203 aaKnown RBP4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 UBE2V1Q13404 147 aa4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 ARL17AQ8IVW1 177 aa4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 C15orf56Q8N910 161 aa4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 CARD19Q96LW7 228 aa4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 SPCS1Q9Y6A9 102 aa4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 PKHD1L1Q86WI1 4243 aa4.63□□□□□ -1.67
DEPDC4-208ENST00000549341 USP17L23D6RBM5 183 aa4.63□□□□□ -1.67
DEPDC4-208ENST00000549341 K7EP34 96 aa4.63□□□□□ -1.67
DEPDC4-208ENST00000549341 C6orf48Q9UBA6 75 aa4.63□□□□□ -1.67
DEPDC4-208ENST00000549341 DNAH8Q96JB1 4490 aa4.62□□□□□ -1.67
DEPDC4-208ENST00000549341 NDUFC2-KCTD14E9PQ53 114 aa4.62□□□□□ -1.67
DEPDC4-208ENST00000549341 SNCGO76070 127 aa4.62□□□□□ -1.67
DEPDC4-208ENST00000549341 SOSTDC1Q6X4U4 206 aa4.62□□□□□ -1.67
DEPDC4-208ENST00000549341 Q6ZRU5 148 aa4.62□□□□□ -1.67
DEPDC4-208ENST00000549341 OR13C6PQ8NH95 151 aa4.62□□□□□ -1.67
DEPDC4-208ENST00000549341 TLX1NBP0CAT3 122 aa4.61□□□□□ -1.67
DEPDC4-208ENST00000549341 ATXN8Q156A1 80 aa4.61□□□□□ -1.67
DEPDC4-208ENST00000549341 S100A7L2Q5SY68 101 aa4.61□□□□□ -1.67
DEPDC4-208ENST00000549341 C10orf25Q5T742 122 aa4.61□□□□□ -1.67
DEPDC4-208ENST00000549341 LINC00526Q96FQ7 95 aa4.61□□□□□ -1.67
DEPDC4-208ENST00000549341 NAA38Q9BRA0 125 aaKnown RBP4.61□□□□□ -1.67
DEPDC4-208ENST00000549341 TMEM126AQ9H061 195 aa4.61□□□□□ -1.67
DEPDC4-208ENST00000549341 FAM30AQ9NZY2 134 aa4.61□□□□□ -1.67
DEPDC4-208ENST00000549341 TRBV10-2A0A0K0K1G8 114 aa4.6□□□□□ -1.67
DEPDC4-208ENST00000549341 LOC107984640A0A0U1RRK4 108 aa4.6□□□□□ -1.67
DEPDC4-208ENST00000549341 H0YGX0 51 aa4.6□□□□□ -1.67
DEPDC4-208ENST00000549341 C9orf116Q5BN46 136 aaPredicted RBP4.6□□□□□ -1.67
DEPDC4-208ENST00000549341 OXTP01178 125 aa4.59□□□□□ -1.67
DEPDC4-208ENST00000549341 RPL28P46779 137 aaKnown RBP4.59□□□□□ -1.67
DEPDC4-208ENST00000549341 RPL18AQ02543 176 aaKnown RBP4.59□□□□□ -1.67
DEPDC4-208ENST00000549341 F8W1H4 67 aa4.58□□□□□ -1.68
DEPDC4-208ENST00000549341 M0R378 163 aa4.58□□□□□ -1.68
DEPDC4-208ENST00000549341 TRIAP1O43715 76 aa4.58□□□□□ -1.68
DEPDC4-208ENST00000549341 CNBPP62633 177 aaKnown RBP4.58□□□□□ -1.68
DEPDC4-208ENST00000549341 GAGE2EQ4V326 116 aa4.58□□□□□ -1.68
DEPDC4-208ENST00000549341 NKAPP1Q8N9T2 125 aa4.58□□□□□ -1.68
DEPDC4-208ENST00000549341 GAGE2DQ9UEU5 116 aa4.58□□□□□ -1.68
DEPDC4-208ENST00000549341 IGKV2-28A0A075B6P5 120 aa4.57□□□□□ -1.68
DEPDC4-208ENST00000549341 LECT2O14960 151 aa4.57□□□□□ -1.68
DEPDC4-208ENST00000549341 IGKV2D-28P01615 120 aa4.57□□□□□ -1.68
DEPDC4-208ENST00000549341 KRTAP15-1Q3LI76 137 aa4.57□□□□□ -1.68
DEPDC4-208ENST00000549341 LINC00337Q8N6G1 96 aa4.57□□□□□ -1.68
DEPDC4-208ENST00000549341 XAGE1AQ9HD64 81 aa4.57□□□□□ -1.68
DEPDC4-208ENST00000549341 H3BMG7 143 aa4.56□□□□□ -1.68
DEPDC4-208ENST00000549341 NCR3O14931 201 aa4.56□□□□□ -1.68
DEPDC4-208ENST00000549341 DNAL4O96015 105 aa4.56□□□□□ -1.68
DEPDC4-208ENST00000549341 GAGE2BQ13066 116 aa4.56□□□□□ -1.68
DEPDC4-208ENST00000549341 Q6ZRP5 223 aa4.56□□□□□ -1.68
DEPDC4-208ENST00000549341 Q8N814 137 aa4.56□□□□□ -1.68
DEPDC4-208ENST00000549341 SMIM11BQ8TCY0 68 aa4.56□□□□□ -1.68
DEPDC4-208ENST00000549341 LINC00474Q9P2X8 69 aa4.56□□□□□ -1.68
DEPDC4-208ENST00000549341 A0A1B0GX51 115 aa4.55□□□□□ -1.68
DEPDC4-208ENST00000549341 SLC25A20O43772 301 aa4.55□□□□□ -1.68
DEPDC4-208ENST00000549341 TCL1BO95988 128 aa4.55□□□□□ -1.68
DEPDC4-208ENST00000549341 SCXQ7RTU7 201 aa4.55□□□□□ -1.68
DEPDC4-208ENST00000549341 FAT4Q6V0I7 4981 aa4.55□□□□□ -1.68
DEPDC4-208ENST00000549341 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 TRAV23DV6A0A075B6W5 121 aa4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 C9JAW5 83 aa4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 H3BQ85 93 aa4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 J3QR89 54 aa4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 LST1O00453 97 aa4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 TRACP01848 142 aa4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 VPREB1P12018 145 aa4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 LINC01620Q4KN68 170 aa4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 DIRC1Q969H9 104 aa4.54□□□□□ -1.68
DEPDC4-208ENST00000549341 IGLV5-37A0A075B6J1 123 aa4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 LRCOL1A6NCL2 159 aa4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 H3BT86 120 aa4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 M0QXV9 152 aa4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 IGLV6-57P01721 117 aa4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 KRTAP10-4P60372 401 aaPredicted RBP4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 PRR3P79522 188 aaKnown RBP4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 Q6ZSA8 131 aa4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 C9orf163Q8N9P6 203 aa4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 TNXBP22105 4242 aa4.53□□□□□ -1.68
DEPDC4-208ENST00000549341 TRBV7-6A0A0J9YX20 115 aa4.52□□□□□ -1.69
DEPDC4-208ENST00000549341 TRBV10-3A0A0K0K1G6 114 aa4.52□□□□□ -1.69
DEPDC4-208ENST00000549341 WFDC2Q14508 124 aa4.52□□□□□ -1.69
DEPDC4-208ENST00000549341 C6orf99Q4VX62 202 aa4.52□□□□□ -1.69
DEPDC4-208ENST00000549341 C9orf129Q5T035 196 aaKnown RBP4.52□□□□□ -1.69
DEPDC4-208ENST00000549341 CLEC2BQ92478 149 aa4.52□□□□□ -1.69
DEPDC4-208ENST00000549341 K7ERU9 68 aa4.51□□□□□ -1.69
DEPDC4-208ENST00000549341 PRYO14603 147 aa4.51□□□□□ -1.69
DEPDC4-208ENST00000549341 COX7BP24311 80 aa4.51□□□□□ -1.69
DEPDC4-208ENST00000549341 RPL37AP61513 92 aaKnown RBP4.51□□□□□ -1.69
DEPDC4-208ENST00000549341 ANKRD29Q8N6D5 301 aa4.51□□□□□ -1.69
DEPDC4-208ENST00000549341 DPH3Q96FX2 82 aa4.51□□□□□ -1.69
DEPDC4-208ENST00000549341 IGKV2-24A0A0C4DH68 120 aa4.5□□□□□ -1.69
DEPDC4-208ENST00000549341 ZNF73O43830 326 aaPredicted RBP4.5□□□□□ -1.69
DEPDC4-208ENST00000549341 MT1HL1P0DM35 61 aa4.5□□□□□ -1.69
DEPDC4-208ENST00000549341 MRPL55Q7Z7F7 128 aaKnown RBP4.5□□□□□ -1.69
DEPDC4-208ENST00000549341 C22orf24Q9Y442 160 aa4.5□□□□□ -1.69
DEPDC4-208ENST00000549341 ETDCA0A1B0GVM5 59 aa4.49□□□□□ -1.69
DEPDC4-208ENST00000549341 hADV29S1A0JD25 119 aa4.49□□□□□ -1.69
DEPDC4-208ENST00000549341 OCIAD2Q56VL3 154 aa4.49□□□□□ -1.69
DEPDC4-208ENST00000549341 FAM19A5Q7Z5A7 132 aaPredicted RBP4.49□□□□□ -1.69
DEPDC4-208ENST00000549341 Q8NDZ9 215 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms