RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 S100A12P80511 92 aa6.79□□□□□ -1.32
SCAF11-208ENST00000546534 FLGP20930 4061 aaPredicted RBP6.79□□□□□ -1.32
SCAF11-208ENST00000546534 BAGE3Q86Y29 109 aa6.78□□□□□ -1.32
SCAF11-208ENST00000546534 LIMD2Q9BT23 127 aa6.78□□□□□ -1.32
SCAF11-208ENST00000546534 DDTP30046 118 aa6.77□□□□□ -1.33
SCAF11-208ENST00000546534 MEIG1Q5JSS6 88 aa6.77□□□□□ -1.33
SCAF11-208ENST00000546534 HRCT1Q6UXD1 115 aa6.77□□□□□ -1.33
SCAF11-208ENST00000546534 TMEM223A0PJW6 202 aa6.76□□□□□ -1.33
SCAF11-208ENST00000546534 ST20-AS1Q8NBB2 130 aa6.76□□□□□ -1.33
SCAF11-208ENST00000546534 URB1-AS1Q96HZ7 61 aa6.75□□□□□ -1.33
SCAF11-208ENST00000546534 PMCHL1Q16048 86 aa6.74□□□□□ -1.33
SCAF11-208ENST00000546534 HBDP02042 147 aa6.73□□□□□ -1.33
SCAF11-208ENST00000546534 RPL37P61927 97 aaKnown RBP6.73□□□□□ -1.33
SCAF11-208ENST00000546534 HERV-K104P63124 156 aa6.73□□□□□ -1.33
SCAF11-208ENST00000546534 FABP9Q0Z7S8 132 aa6.73□□□□□ -1.33
SCAF11-208ENST00000546534 CHTOPQ9Y3Y2 248 aaKnown RBP6.73□□□□□ -1.33
SCAF11-208ENST00000546534 FCGBPQ9Y6R7 5405 aaPredicted RBP6.72□□□□□ -1.33
SCAF11-208ENST00000546534 TRBV10-2A0A0K0K1G8 114 aa6.72□□□□□ -1.33
SCAF11-208ENST00000546534 JOSD1Q15040 202 aaPredicted RBP6.72□□□□□ -1.33
SCAF11-208ENST00000546534 LOC107984156A0A0G2JMH3 177 aa6.71□□□□□ -1.34
SCAF11-208ENST00000546534 LINC00614P0C842 121 aa6.71□□□□□ -1.34
SCAF11-208ENST00000546534 ARL17AQ8IVW1 177 aa6.71□□□□□ -1.34
SCAF11-208ENST00000546534 LINC00587B1AMM8 73 aa6.7□□□□□ -1.34
SCAF11-208ENST00000546534 MAP1LC3CQ9BXW4 147 aa6.7□□□□□ -1.34
SCAF11-208ENST00000546534 SPANXB1Q9NS25 103 aaPredicted RBP6.69□□□□□ -1.34
SCAF11-208ENST00000546534 TRAV23DV6A0A075B6W5 121 aa6.68□□□□□ -1.34
SCAF11-208ENST00000546534 C5orf52A6NGY3 159 aa6.68□□□□□ -1.34
SCAF11-208ENST00000546534 CFC1P0CG37 223 aa6.68□□□□□ -1.34
SCAF11-208ENST00000546534 SPRR1BP22528 89 aa6.68□□□□□ -1.34
SCAF11-208ENST00000546534 S100PP25815 95 aa6.68□□□□□ -1.34
SCAF11-208ENST00000546534 COX19Q49B96 90 aa6.68□□□□□ -1.34
SCAF11-208ENST00000546534 S100A7L2Q5SY68 101 aa6.68□□□□□ -1.34
SCAF11-208ENST00000546534 C18orf32Q8TCD1 76 aa6.68□□□□□ -1.34
SCAF11-208ENST00000546534 MYMXA0A1B0GTQ4 84 aa6.67□□□□□ -1.34
SCAF11-208ENST00000546534 ZNF73O43830 326 aaPredicted RBP6.67□□□□□ -1.34
SCAF11-208ENST00000546534 SEC11CQ9BY50 192 aa6.67□□□□□ -1.34
SCAF11-208ENST00000546534 H7C2G1 150 aa6.66□□□□□ -1.34
SCAF11-208ENST00000546534 C1orf195Q5TG92 126 aa6.66□□□□□ -1.34
SCAF11-208ENST00000546534 SLC25A34Q6PIV7 304 aa6.66□□□□□ -1.34
SCAF11-208ENST00000546534 Q6Q795 121 aa6.66□□□□□ -1.34
SCAF11-208ENST00000546534 TRAV12-1A0A0B4J245 112 aa6.65□□□□□ -1.34
SCAF11-208ENST00000546534 CD164Q04900 197 aa6.65□□□□□ -1.34
SCAF11-208ENST00000546534 LAMTOR3Q9UHA4 124 aa6.65□□□□□ -1.34
SCAF11-208ENST00000546534 RPS10P5Q9NQ39 176 aa6.64□□□□□ -1.35
SCAF11-208ENST00000546534 NDUFC2O95298 119 aa6.63□□□□□ -1.35
SCAF11-208ENST00000546534 TSPEAR-AS2P59090 65 aa6.63□□□□□ -1.35
SCAF11-208ENST00000546534 Q5XG85 94 aa6.63□□□□□ -1.35
SCAF11-208ENST00000546534 MIEN1Q9BRT3 115 aa6.63□□□□□ -1.35
SCAF11-208ENST00000546534 IFI27L1Q96BM0 104 aa6.62□□□□□ -1.35
SCAF11-208ENST00000546534 HINT1P49773 126 aaPredicted RBP6.61□□□□□ -1.35
SCAF11-208ENST00000546534 Q1RN00 199 aa6.61□□□□□ -1.35
SCAF11-208ENST00000546534 PRO1933Q9H354 126 aa6.61□□□□□ -1.35
SCAF11-208ENST00000546534 TRAPPC1Q9Y5R8 145 aa6.6□□□□□ -1.35
SCAF11-208ENST00000546534 TMEM218A2RU14 115 aa6.59□□□□□ -1.35
SCAF11-208ENST00000546534 SOSTDC1Q6X4U4 206 aa6.59□□□□□ -1.35
SCAF11-208ENST00000546534 SMIM29Q86T20 159 aa6.59□□□□□ -1.35
SCAF11-208ENST00000546534 COMMD7Q86VX2 200 aa6.59□□□□□ -1.35
SCAF11-208ENST00000546534 DHRS4-AS1Q9P1J3 65 aa6.59□□□□□ -1.35
SCAF11-208ENST00000546534 LEPROTO15243 131 aa6.58□□□□□ -1.36
SCAF11-208ENST00000546534 NPC2P61916 151 aa6.58□□□□□ -1.36
SCAF11-208ENST00000546534 IFITM2Q01629 132 aa6.58□□□□□ -1.36
SCAF11-208ENST00000546534 A0A0G2JQZ4 141 aa6.57□□□□□ -1.36
SCAF11-208ENST00000546534 AKR1D1P51857 326 aa6.57□□□□□ -1.36
SCAF11-208ENST00000546534 TAL2Q16559 108 aa6.57□□□□□ -1.36
SCAF11-208ENST00000546534 DEFB105AQ8NG35 78 aa6.57□□□□□ -1.36
SCAF11-208ENST00000546534 J3QQQ9 107 aa6.56□□□□□ -1.36
SCAF11-208ENST00000546534 CBY1Q9Y3M2 126 aa6.56□□□□□ -1.36
SCAF11-208ENST00000546534 ADAMTSL4-AS1Q5T5F5 129 aa6.55□□□□□ -1.36
SCAF11-208ENST00000546534 H0Y8G0 127 aa6.54□□□□□ -1.36
SCAF11-208ENST00000546534 RHEBQ15382 184 aa6.54□□□□□ -1.36
SCAF11-208ENST00000546534 UQCC3Q6UW78 93 aa6.54□□□□□ -1.36
SCAF11-208ENST00000546534 TEX49A0A1B0GTD5 131 aa6.53□□□□□ -1.36
SCAF11-208ENST00000546534 MT2AP02795 61 aa6.53□□□□□ -1.36
SCAF11-208ENST00000546534 PCP4P48539 62 aa6.53□□□□□ -1.36
SCAF11-208ENST00000546534 NMUP48645 174 aa6.53□□□□□ -1.36
SCAF11-208ENST00000546534 CLLU1Q5K131 121 aa6.53□□□□□ -1.36
SCAF11-208ENST00000546534 ATP11AUNQ6ZP68 121 aa6.53□□□□□ -1.36
SCAF11-208ENST00000546534 OR13C6PQ8NH95 151 aa6.53□□□□□ -1.36
SCAF11-208ENST00000546534 CHCHD1Q96BP2 118 aaKnown RBP6.53□□□□□ -1.36
SCAF11-208ENST00000546534 SYNE2Q8WXH0 6885 aaKnown RBP6.53□□□□□ -1.36
SCAF11-208ENST00000546534 LGALS3P17931 250 aaKnown RBP6.52□□□□□ -1.37
SCAF11-208ENST00000546534 COX7BP24311 80 aa6.52□□□□□ -1.37
SCAF11-208ENST00000546534 ELOF1P60002 83 aaKnown RBP6.52□□□□□ -1.37
SCAF11-208ENST00000546534 MACF1Q9UPN3 7388 aaKnown RBP6.52□□□□□ -1.37
SCAF11-208ENST00000546534 A0A0J9YXY3 114 aa6.5□□□□□ -1.37
SCAF11-208ENST00000546534 C20orf202A1L168 122 aa6.5□□□□□ -1.37
SCAF11-208ENST00000546534 TCL1BO95988 128 aa6.5□□□□□ -1.37
SCAF11-208ENST00000546534 C6orf99Q4VX62 202 aa6.49□□□□□ -1.37
SCAF11-208ENST00000546534 Q75L30 129 aa6.49□□□□□ -1.37
SCAF11-208ENST00000546534 MT1FP04733 61 aa6.48□□□□□ -1.37
SCAF11-208ENST00000546534 PLNP26678 52 aa6.48□□□□□ -1.37
SCAF11-208ENST00000546534 HERVK_113P61574 105 aa6.48□□□□□ -1.37
SCAF11-208ENST00000546534 OBSCN-AS1Q96MR7 158 aa6.48□□□□□ -1.37
SCAF11-208ENST00000546534 SPANXCQ9NY87 97 aa6.48□□□□□ -1.37
SCAF11-208ENST00000546534 C10orf91Q5T1B1 145 aa6.47□□□□□ -1.37
SCAF11-208ENST00000546534 PCP2Q8IVA1 136 aa6.47□□□□□ -1.37
SCAF11-208ENST00000546534 LINC00308Q8TCZ7 52 aa6.47□□□□□ -1.37
SCAF11-208ENST00000546534 PMCHL2Q9BQD1 86 aa6.47□□□□□ -1.37
SCAF11-208ENST00000546534 SPANXDQ9BXN6 97 aa6.47□□□□□ -1.37
SCAF11-208ENST00000546534 HSBP1O75506 76 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms