RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 C22orf24Q9Y442 160 aa10.55□□□□□ -0.72
CUX1-211ENST00000546411 MPLKIPQ8TAP9 179 aa10.55□□□□□ -0.72
CUX1-211ENST00000546411 BAHCC1Q9P281 2608 aa10.54□□□□□ -0.72
CUX1-211ENST00000546411 KRTAP10-11P60412 298 aa10.54□□□□□ -0.72
CUX1-211ENST00000546411 PKIGQ9Y2B9 76 aa10.54□□□□□ -0.72
CUX1-211ENST00000546411 REG3GQ6UW15 175 aa10.54□□□□□ -0.72
CUX1-211ENST00000546411 Q6ZRP5 223 aa10.53□□□□□ -0.72
CUX1-211ENST00000546411 SPINK6Q6UWN8 80 aa10.52□□□□□ -0.72
CUX1-211ENST00000546411 LINC00167Q96N53 147 aa10.52□□□□□ -0.73
CUX1-211ENST00000546411 LINC00612Q8N6U2 182 aa10.51□□□□□ -0.73
CUX1-211ENST00000546411 LY6G6CO95867 125 aa10.5□□□□□ -0.73
CUX1-211ENST00000546411 NHLRC4P0CG21 123 aaPredicted RBP10.5□□□□□ -0.73
CUX1-211ENST00000546411 LINC00588Q9Y4M8 146 aa10.5□□□□□ -0.73
CUX1-211ENST00000546411 A0A087WSZ3 146 aa10.5□□□□□ -0.73
CUX1-211ENST00000546411 TRAV7A0A075B6U4 112 aa10.48□□□□□ -0.73
CUX1-211ENST00000546411 FAM168BA1KXE4 195 aa10.48□□□□□ -0.73
CUX1-211ENST00000546411 VPREB1P12018 145 aa10.47□□□□□ -0.73
CUX1-211ENST00000546411 Q6ZQT0 140 aa10.47□□□□□ -0.73
CUX1-211ENST00000546411 ELOF1P60002 83 aaKnown RBP10.46□□□□□ -0.73
CUX1-211ENST00000546411 PRR34Q9NV39 138 aa10.46□□□□□ -0.73
CUX1-211ENST00000546411 H3BNG1 76 aa10.46□□□□□ -0.74
CUX1-211ENST00000546411 ST20-AS1Q8NBB2 130 aa10.46□□□□□ -0.74
CUX1-211ENST00000546411 IGKV4-1P06312 121 aa10.45□□□□□ -0.74
CUX1-211ENST00000546411 IGLV6-57P01721 117 aa10.44□□□□□ -0.74
CUX1-211ENST00000546411 SERTAD4-AS1Q5TG53 156 aa10.44□□□□□ -0.74
CUX1-211ENST00000546411 Q9BRP9 147 aa10.44□□□□□ -0.74
CUX1-211ENST00000546411 PRYO14603 147 aa10.43□□□□□ -0.74
CUX1-211ENST00000546411 CHTF8P0CG12 524 aa10.42□□□□□ -0.74
CUX1-211ENST00000546411 BRK1Q8WUW1 75 aa10.41□□□□□ -0.74
CUX1-211ENST00000546411 C15orf56Q8N910 161 aa10.41□□□□□ -0.74
CUX1-211ENST00000546411 GVQW2A0A096LPI5 108 aaPredicted RBP10.39□□□□□ -0.75
CUX1-211ENST00000546411 NUPR2A6NF83 97 aa10.37□□□□□ -0.75
CUX1-211ENST00000546411 CASC10Q5T4H9 136 aa10.37□□□□□ -0.75
CUX1-211ENST00000546411 KMT2BQ9UMN6 2715 aaPredicted RBP10.37□□□□□ -0.75
CUX1-211ENST00000546411 LINC00208Q96KT6 92 aa10.37□□□□□ -0.75
CUX1-211ENST00000546411 F8WDY8 70 aa10.37□□□□□ -0.75
CUX1-211ENST00000546411 Q6ZRX8 168 aa10.37□□□□□ -0.75
CUX1-211ENST00000546411 TMEM254Q8TBM7 123 aa10.37□□□□□ -0.75
CUX1-211ENST00000546411 MDFIQ99750 246 aa10.37□□□□□ -0.75
CUX1-211ENST00000546411 PHF5AQ7RTV0 110 aaKnown RBP10.36□□□□□ -0.75
CUX1-211ENST00000546411 DNAH10OSP0CZ25 163 aa10.36□□□□□ -0.75
CUX1-211ENST00000546411 K7EIL1 84 aa10.35□□□□□ -0.75
CUX1-211ENST00000546411 C4orf48Q5BLP8 95 aa10.35□□□□□ -0.75
CUX1-211ENST00000546411 STAB2Q8WWQ8 2551 aa10.35□□□□□ -0.75
CUX1-211ENST00000546411 LINC00474Q9P2X8 69 aa10.35□□□□□ -0.75
CUX1-211ENST00000546411 CXCL6P80162 114 aa10.35□□□□□ -0.75
CUX1-211ENST00000546411 NDUFC1O43677 76 aa10.34□□□□□ -0.75
CUX1-211ENST00000546411 A0A0G2JQZ4 141 aa10.34□□□□□ -0.75
CUX1-211ENST00000546411 A0A1W2PNN7 141 aa10.34□□□□□ -0.75
CUX1-211ENST00000546411 TM2D3Q9BRN9 247 aa10.33□□□□□ -0.76
CUX1-211ENST00000546411 LOC110117498A0A087WWA1 95 aa10.33□□□□□ -0.76
CUX1-211ENST00000546411 SMIM29Q86T20 159 aa10.33□□□□□ -0.76
CUX1-211ENST00000546411 CRYGAP11844 174 aa10.32□□□□□ -0.76
CUX1-211ENST00000546411 LINC00528Q8N1L1 170 aa10.32□□□□□ -0.76
CUX1-211ENST00000546411 V9GYY9 64 aa10.32□□□□□ -0.76
CUX1-211ENST00000546411 Q8NDZ9 215 aa10.3□□□□□ -0.76
CUX1-211ENST00000546411 TRBV7-6A0A0J9YX20 115 aa10.3□□□□□ -0.76
CUX1-211ENST00000546411 CIRBP-AS1Q8TBR5 109 aa10.3□□□□□ -0.76
CUX1-211ENST00000546411 A0A0U1RQV1 116 aa10.29□□□□□ -0.76
CUX1-211ENST00000546411 LINC00476Q8WZB0 136 aa10.29□□□□□ -0.76
CUX1-211ENST00000546411 IGLV5-52A0A0A0MRZ9 124 aa10.29□□□□□ -0.76
CUX1-211ENST00000546411 SPENQ96T58 3664 aaKnown RBP10.29□□□□□ -0.76
CUX1-211ENST00000546411 IGHV6-1A0A0B4J1U7 121 aa10.28□□□□□ -0.76
CUX1-211ENST00000546411 RPS28P62857 69 aaKnown RBP10.28□□□□□ -0.76
CUX1-211ENST00000546411 C4orf26Q17RF5 130 aa10.27□□□□□ -0.76
CUX1-211ENST00000546411 CASC2Q6XLA1 102 aa10.27□□□□□ -0.76
CUX1-211ENST00000546411 CHKB-CPT1BH3BT56 60 aa10.27□□□□□ -0.77
CUX1-211ENST00000546411 Q8NBF4 154 aa10.27□□□□□ -0.77
CUX1-211ENST00000546411 WIPF1O43516 503 aa10.25□□□□□ -0.77
CUX1-211ENST00000546411 KCNQ1DNQ9H478 68 aa10.25□□□□□ -0.77
CUX1-211ENST00000546411 EPM2AB3EWF7 344 aa10.25□□□□□ -0.77
CUX1-211ENST00000546411 HCG22E2RYF7 251 aa10.24□□□□□ -0.77
CUX1-211ENST00000546411 RPL37AP61513 92 aaKnown RBP10.24□□□□□ -0.77
CUX1-211ENST00000546411 Q8N377 158 aa10.24□□□□□ -0.77
CUX1-211ENST00000546411 ZNF706Q9Y5V0 76 aaPredicted RBP10.24□□□□□ -0.77
CUX1-211ENST00000546411 IGLV1-50A0A075B6I6 118 aa10.23□□□□□ -0.77
CUX1-211ENST00000546411 SERP1Q9Y6X1 66 aa10.23□□□□□ -0.77
CUX1-211ENST00000546411 C16orf90A8MZG2 172 aa10.23□□□□□ -0.77
CUX1-211ENST00000546411 PCOTHQ58A44 107 aa10.23□□□□□ -0.77
CUX1-211ENST00000546411 SMIM26A0A096LP01 95 aa10.22□□□□□ -0.77
CUX1-211ENST00000546411 C1orf134Q5TEV5 83 aa10.22□□□□□ -0.77
CUX1-211ENST00000546411 NBDYA0A0U1RRE5 68 aa10.22□□□□□ -0.77
CUX1-211ENST00000546411 SEC61GP60059 68 aa10.21□□□□□ -0.78
CUX1-211ENST00000546411 ERC2-IT1O76042 136 aa10.21□□□□□ -0.78
CUX1-211ENST00000546411 PRO0628Q9UI54 55 aa10.21□□□□□ -0.78
CUX1-211ENST00000546411 ATP5EP56381 51 aaPredicted RBP10.19□□□□□ -0.78
CUX1-211ENST00000546411 C1orf195Q5TG92 126 aa10.19□□□□□ -0.78
CUX1-211ENST00000546411 TRBV7-4A0A0J9YYF1 115 aa10.18□□□□□ -0.78
CUX1-211ENST00000546411 SPTSSBQ8NFR3 76 aa10.18□□□□□ -0.78
CUX1-211ENST00000546411 RETNLBQ9BQ08 111 aa10.18□□□□□ -0.78
CUX1-211ENST00000546411 MOBPQ13875 183 aa10.18□□□□□ -0.78
CUX1-211ENST00000546411 H0Y9P7 68 aa10.17□□□□□ -0.78
CUX1-211ENST00000546411 LINC01600Q96MT4 127 aa10.17□□□□□ -0.78
CUX1-211ENST00000546411 K7EQZ3 153 aa10.16□□□□□ -0.78
CUX1-211ENST00000546411 PSPHP1O15172 72 aa10.14□□□□□ -0.79
CUX1-211ENST00000546411 OBSCN-AS1Q96MR7 158 aa10.13□□□□□ -0.79
CUX1-211ENST00000546411 CSMD2Q7Z408 3487 aa10.13□□□□□ -0.79
CUX1-211ENST00000546411 TENM4Q6N022 2769 aa10.12□□□□□ -0.79
CUX1-211ENST00000546411 TENM1Q9UKZ4 2725 aa10.12□□□□□ -0.79
CUX1-211ENST00000546411 IGFL1Q6UW32 110 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms