RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 A6NDN8 102 aa7.15□□□□□ -1.26
YBX3-213ENST00000542641 HSD52Q0P140 79 aa7.15□□□□□ -1.26
YBX3-213ENST00000542641 REG3GQ6UW15 175 aa7.15□□□□□ -1.26
YBX3-213ENST00000542641 TMEM126AQ9H061 195 aa7.15□□□□□ -1.26
YBX3-213ENST00000542641 HERC2O95714 4834 aa7.14□□□□□ -1.27
YBX3-213ENST00000542641 TRAV13-2A0A0B4J235 113 aa7.14□□□□□ -1.27
YBX3-213ENST00000542641 KCNQ1DNQ9H478 68 aa7.14□□□□□ -1.27
YBX3-213ENST00000542641 PRYO14603 147 aa7.13□□□□□ -1.27
YBX3-213ENST00000542641 BCE1O60756 84 aa7.13□□□□□ -1.27
YBX3-213ENST00000542641 KRTAP10-4P60372 401 aaPredicted RBP7.13□□□□□ -1.27
YBX3-213ENST00000542641 CBY1Q9Y3M2 126 aa7.13□□□□□ -1.27
YBX3-213ENST00000542641 TRAV23DV6A0A075B6W5 121 aa7.12□□□□□ -1.27
YBX3-213ENST00000542641 IGLV7-43P04211 117 aa7.12□□□□□ -1.27
YBX3-213ENST00000542641 CFC1BP0CG36 223 aa7.11□□□□□ -1.27
YBX3-213ENST00000542641 CFC1P0CG37 223 aa7.11□□□□□ -1.27
YBX3-213ENST00000542641 FXYD2P54710 66 aa7.11□□□□□ -1.27
YBX3-213ENST00000542641 CTAG1AP78358 180 aa7.11□□□□□ -1.27
YBX3-213ENST00000542641 ZNF73O43830 326 aaPredicted RBP7.1□□□□□ -1.27
YBX3-213ENST00000542641 SPRR1AP35321 89 aa7.1□□□□□ -1.27
YBX3-213ENST00000542641 UBE2AP49459 152 aa7.1□□□□□ -1.27
YBX3-213ENST00000542641 FAM19A1Q7Z5A9 133 aa7.1□□□□□ -1.27
YBX3-213ENST00000542641 RAB37Q96AX2 223 aa7.1□□□□□ -1.27
YBX3-213ENST00000542641 KRTAP4-5Q9BYR2 181 aa7.1□□□□□ -1.27
YBX3-213ENST00000542641 ETDCA0A1B0GVM5 59 aa7.09□□□□□ -1.27
YBX3-213ENST00000542641 ZNF861PO60384 105 aa7.09□□□□□ -1.27
YBX3-213ENST00000542641 SRRM2Q9UQ35 2752 aaKnown RBP7.09□□□□□ -1.27
YBX3-213ENST00000542641 A0A0B4J2C4 111 aa7.08□□□□□ -1.28
YBX3-213ENST00000542641 RPL13AP40429 203 aaKnown RBP7.08□□□□□ -1.28
YBX3-213ENST00000542641 RPL28P46779 137 aaKnown RBP7.08□□□□□ -1.28
YBX3-213ENST00000542641 HINT1P49773 126 aaPredicted RBP7.08□□□□□ -1.28
YBX3-213ENST00000542641 PRLHP81277 87 aa7.08□□□□□ -1.28
YBX3-213ENST00000542641 KRTAP4-16G5E9R7 235 aaPredicted RBP7.07□□□□□ -1.28
YBX3-213ENST00000542641 BVES-AS1Q5T3Y7 98 aa7.07□□□□□ -1.28
YBX3-213ENST00000542641 SPINK6Q6UWN8 80 aa7.07□□□□□ -1.28
YBX3-213ENST00000542641 SMIM11BQ8TCY0 68 aa7.07□□□□□ -1.28
YBX3-213ENST00000542641 DIRC1Q969H9 104 aa7.07□□□□□ -1.28
YBX3-213ENST00000542641 NHP2Q9NX24 153 aaKnown RBP7.07□□□□□ -1.28
YBX3-213ENST00000542641 B5MCH6 92 aa7.06□□□□□ -1.28
YBX3-213ENST00000542641 H7C2G1 150 aa7.06□□□□□ -1.28
YBX3-213ENST00000542641 M0R143 59 aa7.06□□□□□ -1.28
YBX3-213ENST00000542641 INAFM2P0DMQ5 153 aa7.06□□□□□ -1.28
YBX3-213ENST00000542641 C6orf99Q4VX62 202 aa7.06□□□□□ -1.28
YBX3-213ENST00000542641 KRTAP13-1Q8IUC0 172 aa7.06□□□□□ -1.28
YBX3-213ENST00000542641 PRO1854Q9UHT4 67 aa7.06□□□□□ -1.28
YBX3-213ENST00000542641 H0Y9J4 135 aa7.05□□□□□ -1.28
YBX3-213ENST00000542641 K7ERJ3 54 aa7.04□□□□□ -1.28
YBX3-213ENST00000542641 COX7BP24311 80 aa7.04□□□□□ -1.28
YBX3-213ENST00000542641 Q6ZRX8 168 aa7.04□□□□□ -1.28
YBX3-213ENST00000542641 HIGD2AQ9BW72 106 aa7.04□□□□□ -1.28
YBX3-213ENST00000542641 KRTAP9-2Q9BYQ4 174 aa7.04□□□□□ -1.28
YBX3-213ENST00000542641 PKHD1L1Q86WI1 4243 aa7.03□□□□□ -1.28
YBX3-213ENST00000542641 TRBV7-6A0A0J9YX20 115 aa7.03□□□□□ -1.28
YBX3-213ENST00000542641 A0A1B0GWB2 263 aa7.03□□□□□ -1.28
YBX3-213ENST00000542641 Q1RN00 199 aa7.03□□□□□ -1.28
YBX3-213ENST00000542641 KRTAP4-12Q9BQ66 201 aa7.03□□□□□ -1.28
YBX3-213ENST00000542641 VAMP3Q15836 100 aa7.02□□□□□ -1.29
YBX3-213ENST00000542641 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.01□□□□□ -1.29
YBX3-213ENST00000542641 ELOF1P60002 83 aaKnown RBP7.01□□□□□ -1.29
YBX3-213ENST00000542641 C21orf62-AS1Q17RA5 79 aa7.01□□□□□ -1.29
YBX3-213ENST00000542641 Q9BRP9 147 aa7.01□□□□□ -1.29
YBX3-213ENST00000542641 BATFQ16520 125 aa7□□□□□ -1.29
YBX3-213ENST00000542641 KRTAP19-1Q8IUB9 90 aa7□□□□□ -1.29
YBX3-213ENST00000542641 SMCR5Q8TEV8 140 aa7□□□□□ -1.29
YBX3-213ENST00000542641 DHRS4-AS1Q9P1J3 65 aa7□□□□□ -1.29
YBX3-213ENST00000542641 ABCA13Q86UQ4 5058 aa6.99□□□□□ -1.29
YBX3-213ENST00000542641 KRTAP9-6A0A140TA67 174 aa6.99□□□□□ -1.29
YBX3-213ENST00000542641 PCP4L1A6NKN8 68 aa6.98□□□□□ -1.29
YBX3-213ENST00000542641 ERC2-IT1O76042 136 aa6.98□□□□□ -1.29
YBX3-213ENST00000542641 PSMB2P49721 201 aa6.98□□□□□ -1.29
YBX3-213ENST00000542641 TSPAN13O95857 204 aa6.97□□□□□ -1.29
YBX3-213ENST00000542641 H0YGX0 51 aa6.96□□□□□ -1.3
YBX3-213ENST00000542641 TRIAP1O43715 76 aa6.96□□□□□ -1.3
YBX3-213ENST00000542641 SLC25A20O43772 301 aa6.96□□□□□ -1.3
YBX3-213ENST00000542641 ZNF706Q9Y5V0 76 aaPredicted RBP6.96□□□□□ -1.3
YBX3-213ENST00000542641 LINC00575Q6W349 94 aa6.95□□□□□ -1.3
YBX3-213ENST00000542641 hADV29S1A0JD25 119 aa6.94□□□□□ -1.3
YBX3-213ENST00000542641 COX6CP09669 75 aa6.94□□□□□ -1.3
YBX3-213ENST00000542641 KRTAP1-4P0C5Y4 121 aa6.94□□□□□ -1.3
YBX3-213ENST00000542641 SPRR4Q96PI1 79 aa6.94□□□□□ -1.3
YBX3-213ENST00000542641 CDIP1Q9H305 208 aa6.94□□□□□ -1.3
YBX3-213ENST00000542641 ANAPC11Q9NYG5 84 aa6.94□□□□□ -1.3
YBX3-213ENST00000542641 GAGE2AQ6NT46 116 aa6.93□□□□□ -1.3
YBX3-213ENST00000542641 ST20-AS1Q8NBB2 130 aa6.93□□□□□ -1.3
YBX3-213ENST00000542641 SNHG12Q9BXW3 62 aa6.93□□□□□ -1.3
YBX3-213ENST00000542641 PCLOQ9Y6V0 5065 aa6.92□□□□□ -1.3
YBX3-213ENST00000542641 SNCGO76070 127 aa6.92□□□□□ -1.3
YBX3-213ENST00000542641 OXTP01178 125 aa6.92□□□□□ -1.3
YBX3-213ENST00000542641 SCGB1C2P0DMR2 95 aa6.92□□□□□ -1.3
YBX3-213ENST00000542641 LINC01600Q96MT4 127 aa6.92□□□□□ -1.3
YBX3-213ENST00000542641 FLG2Q5D862 2391 aaPredicted RBP6.92□□□□□ -1.3
YBX3-213ENST00000542641 MYCBP2O75592 4640 aa6.91□□□□□ -1.3
YBX3-213ENST00000542641 KRTAP19-4Q3LI73 84 aa6.91□□□□□ -1.3
YBX3-213ENST00000542641 DEFB105AQ8NG35 78 aa6.91□□□□□ -1.3
YBX3-213ENST00000542641 FAM218AQ96MZ4 157 aa6.91□□□□□ -1.3
YBX3-213ENST00000542641 NAA38Q9BRA0 125 aaKnown RBP6.91□□□□□ -1.3
YBX3-213ENST00000542641 FAT3Q8TDW7 4589 aa6.9□□□□□ -1.3
YBX3-213ENST00000542641 LRP1Q07954 4544 aaKnown RBP6.9□□□□□ -1.3
YBX3-213ENST00000542641 KRTAP29-1A8MX34 341 aaPredicted RBP6.9□□□□□ -1.3
YBX3-213ENST00000542641 CRYGAP11844 174 aa6.9□□□□□ -1.3
YBX3-213ENST00000542641 FAM229BQ4G0N7 80 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms