RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 INAFM1C9JVW0 142 aa5.66□□□□□ -1.5
YBX3-208ENST00000540447 Q8N1X5 172 aa5.66□□□□□ -1.5
YBX3-208ENST00000540447 TTC28Q96AY4 2481 aa5.66□□□□□ -1.5
YBX3-208ENST00000540447 LY6G6CO95867 125 aa5.65□□□□□ -1.5
YBX3-208ENST00000540447 FN1P02751 2386 aaKnown RBP5.64□□□□□ -1.51
YBX3-208ENST00000540447 LTBP2Q14767 1821 aa5.64□□□□□ -1.51
YBX3-208ENST00000540447 PLA2G2DQ9UNK4 145 aa5.63□□□□□ -1.51
YBX3-208ENST00000540447 CNBPP62633 177 aaKnown RBP5.63□□□□□ -1.51
YBX3-208ENST00000540447 C10orf142B7Z368 130 aa5.63□□□□□ -1.51
YBX3-208ENST00000540447 DOPEY1Q5JWR5 2465 aa5.62□□□□□ -1.51
YBX3-208ENST00000540447 ABCA2Q9BZC7 2435 aa5.61□□□□□ -1.51
YBX3-208ENST00000540447 PRR34Q9NV39 138 aa5.61□□□□□ -1.51
YBX3-208ENST00000540447 TYMSOSQ8TAI1 123 aa5.61□□□□□ -1.51
YBX3-208ENST00000540447 CSNK1G2-AS1Q8NCQ2 148 aa5.61□□□□□ -1.51
YBX3-208ENST00000540447 ZNF575Q86XF7 245 aa5.61□□□□□ -1.51
YBX3-208ENST00000540447 CEP350Q5VT06 3117 aa5.61□□□□□ -1.51
YBX3-208ENST00000540447 MYO9AB2RTY4 2548 aa5.6□□□□□ -1.51
YBX3-208ENST00000540447 A0A1W2PPR1 153 aa5.6□□□□□ -1.51
YBX3-208ENST00000540447 CACNA1AO00555 2505 aa5.6□□□□□ -1.51
YBX3-208ENST00000540447 HIVEP3Q5T1R4 2406 aa5.59□□□□□ -1.51
YBX3-208ENST00000540447 COL27A1Q8IZC6 1860 aaPredicted RBP5.59□□□□□ -1.51
YBX3-208ENST00000540447 ACACBO00763 2458 aa5.59□□□□□ -1.51
YBX3-208ENST00000540447 CENPFP49454 3210 aa5.57□□□□□ -1.52
YBX3-208ENST00000540447 DNAH10OSP0CZ25 163 aa5.57□□□□□ -1.52
YBX3-208ENST00000540447 MYO18BQ8IUG5 2567 aa5.56□□□□□ -1.52
YBX3-208ENST00000540447 MMP24-AS1A0A0U1RRL7 71 aa5.56□□□□□ -1.52
YBX3-208ENST00000540447 ROMO1P60602 79 aa5.56□□□□□ -1.52
YBX3-208ENST00000540447 LINC00483Q53H64 154 aa5.55□□□□□ -1.52
YBX3-208ENST00000540447 CR1P17927 2039 aa5.54□□□□□ -1.52
YBX3-208ENST00000540447 C19orf73Q9NVV2 129 aa5.54□□□□□ -1.52
YBX3-208ENST00000540447 ADM2Q7Z4H4 148 aa5.54□□□□□ -1.52
YBX3-208ENST00000540447 KRTAP25-1Q3LHN0 102 aa5.53□□□□□ -1.52
YBX3-208ENST00000540447 IGLV7-43P04211 117 aa5.52□□□□□ -1.53
YBX3-208ENST00000540447 NDUFAF8A1L188 74 aa5.52□□□□□ -1.53
YBX3-208ENST00000540447 ZNF861PO60384 105 aa5.51□□□□□ -1.53
YBX3-208ENST00000540447 LINC00612Q8N6U2 182 aa5.51□□□□□ -1.53
YBX3-208ENST00000540447 A8MU10 97 aa5.51□□□□□ -1.53
YBX3-208ENST00000540447 SPATA8Q6RVD6 105 aa5.51□□□□□ -1.53
YBX3-208ENST00000540447 IGLV5-37A0A075B6J1 123 aa5.5□□□□□ -1.53
YBX3-208ENST00000540447 ANAPC11Q9NYG5 84 aa5.5□□□□□ -1.53
YBX3-208ENST00000540447 GIG44P09565 113 aaPredicted RBP5.5□□□□□ -1.53
YBX3-208ENST00000540447 ZCCHC13Q8WW36 166 aaKnown RBP5.5□□□□□ -1.53
YBX3-208ENST00000540447 NAV2Q8IVL1 2488 aa5.49□□□□□ -1.53
YBX3-208ENST00000540447 ZFHX2Q9C0A1 2572 aaPredicted RBP5.49□□□□□ -1.53
YBX3-208ENST00000540447 C9orf92A6NGG3 77 aa5.49□□□□□ -1.53
YBX3-208ENST00000540447 CCDC168Q8NDH2 2452 aa5.47□□□□□ -1.53
YBX3-208ENST00000540447 RPL37P61927 97 aaKnown RBP5.46□□□□□ -1.54
YBX3-208ENST00000540447 Q8NDZ9 215 aa5.46□□□□□ -1.54
YBX3-208ENST00000540447 BRCA2P51587 3418 aa5.46□□□□□ -1.54
YBX3-208ENST00000540447 SMR3AQ99954 134 aa5.45□□□□□ -1.54
YBX3-208ENST00000540447 NBDYA0A0U1RRE5 68 aa5.45□□□□□ -1.54
YBX3-208ENST00000540447 KRTAP10-9P60411 292 aa5.45□□□□□ -1.54
YBX3-208ENST00000540447 F8P00451 2351 aa5.45□□□□□ -1.54
YBX3-208ENST00000540447 Q5W150 140 aa5.44□□□□□ -1.54
YBX3-208ENST00000540447 TLN1Q9Y490 2541 aaKnown RBP5.44□□□□□ -1.54
YBX3-208ENST00000540447 LINC00472Q9H8W2 130 aa5.44□□□□□ -1.54
YBX3-208ENST00000540447 NOTCH2Q04721 2471 aa5.43□□□□□ -1.54
YBX3-208ENST00000540447 MKI67P46013 3256 aaKnown RBP5.43□□□□□ -1.54
YBX3-208ENST00000540447 CAMK2N1Q7Z7J9 78 aa5.43□□□□□ -1.54
YBX3-208ENST00000540447 SEC61BP60468 96 aaKnown RBP5.42□□□□□ -1.54
YBX3-208ENST00000540447 LINC00304Q8N9R0 145 aa5.42□□□□□ -1.54
YBX3-208ENST00000540447 PIEZO2Q9H5I5 2752 aa5.42□□□□□ -1.54
YBX3-208ENST00000540447 H1FX-AS1Q4G0G2 97 aa5.42□□□□□ -1.54
YBX3-208ENST00000540447 PKD1L2Q7Z442 2459 aa5.42□□□□□ -1.54
YBX3-208ENST00000540447 A0A0C4DFX4 3053 aa5.41□□□□□ -1.54
YBX3-208ENST00000540447 TLN2Q9Y4G6 2542 aa5.4□□□□□ -1.54
YBX3-208ENST00000540447 Q6ZR54 194 aa5.4□□□□□ -1.54
YBX3-208ENST00000540447 DNAH12Q6ZR08 3092 aa5.4□□□□□ -1.55
YBX3-208ENST00000540447 A0A087X002 238 aa5.39□□□□□ -1.55
YBX3-208ENST00000540447 PSORS1C2Q9UIG4 136 aa5.39□□□□□ -1.55
YBX3-208ENST00000540447 BDP1A6H8Y1 2624 aa5.38□□□□□ -1.55
YBX3-208ENST00000540447 CASC10Q5T4H9 136 aa5.38□□□□□ -1.55
YBX3-208ENST00000540447 COL4A2P08572 1712 aa5.36□□□□□ -1.55
YBX3-208ENST00000540447 KRTAP29-1A8MX34 341 aaPredicted RBP5.36□□□□□ -1.55
YBX3-208ENST00000540447 LCE6AA0A183 80 aa5.36□□□□□ -1.55
YBX3-208ENST00000540447 SPRR1AP35321 89 aa5.36□□□□□ -1.55
YBX3-208ENST00000540447 LAMA2P24043 3122 aaKnown RBP5.36□□□□□ -1.55
YBX3-208ENST00000540447 WDR87Q6ZQQ6 2873 aa5.35□□□□□ -1.55
YBX3-208ENST00000540447 LAMA3Q16787 3333 aa5.34□□□□□ -1.55
YBX3-208ENST00000540447 RANBP2P49792 3224 aaKnown RBP5.34□□□□□ -1.55
YBX3-208ENST00000540447 SETD2Q9BYW2 2564 aaPredicted RBP5.34□□□□□ -1.55
YBX3-208ENST00000540447 KRTAP26-1Q6PEX3 210 aa5.33□□□□□ -1.56
YBX3-208ENST00000540447 USP9XQ93008 2570 aaPredicted RBP5.33□□□□□ -1.56
YBX3-208ENST00000540447 TNP2Q05952 138 aa5.33□□□□□ -1.56
YBX3-208ENST00000540447 LRRK2Q5S007 2527 aa5.33□□□□□ -1.56
YBX3-208ENST00000540447 ABCA12Q86UK0 2595 aa5.32□□□□□ -1.56
YBX3-208ENST00000540447 K7EIL1 84 aa5.31□□□□□ -1.56
YBX3-208ENST00000540447 ACANP16112 2415 aa5.31□□□□□ -1.56
YBX3-208ENST00000540447 A8MUU9 505 aa5.31□□□□□ -1.56
YBX3-208ENST00000540447 MUC6Q6W4X9 2439 aa5.3□□□□□ -1.56
YBX3-208ENST00000540447 SPRR1BP22528 89 aa5.3□□□□□ -1.56
YBX3-208ENST00000540447 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.3□□□□□ -1.56
YBX3-208ENST00000540447 C20orf166-AS1Q96NR2 134 aa5.29□□□□□ -1.56
YBX3-208ENST00000540447 S4R3F8 94 aa5.28□□□□□ -1.56
YBX3-208ENST00000540447 PANO1I0J062 215 aa5.28□□□□□ -1.56
YBX3-208ENST00000540447 COX6B2Q6YFQ2 88 aa5.28□□□□□ -1.56
YBX3-208ENST00000540447 A0A087WTM6 91 aa5.27□□□□□ -1.57
YBX3-208ENST00000540447 FLG2Q5D862 2391 aaPredicted RBP5.24□□□□□ -1.57
YBX3-208ENST00000540447 NCOR2Q9Y618 2525 aa5.23□□□□□ -1.57
YBX3-208ENST00000540447 PRUNE2Q8WUY3 3088 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms