RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 ERC2-IT1O76042 136 aa11.94□□□□□ -0.5
SFSWAP-203ENST00000535236 F8P00451 2351 aa11.94□□□□□ -0.5
SFSWAP-203ENST00000535236 UQCR11O14957 56 aa11.93□□□□□ -0.5
SFSWAP-203ENST00000535236 C9orf129Q5T035 196 aaKnown RBP11.93□□□□□ -0.5
SFSWAP-203ENST00000535236 C9orf163Q8N9P6 203 aa11.91□□□□□ -0.5
SFSWAP-203ENST00000535236 ANKRD17O75179 2603 aaKnown RBP11.91□□□□□ -0.5
SFSWAP-203ENST00000535236 KRTAP10-3P60369 221 aa11.91□□□□□ -0.5
SFSWAP-203ENST00000535236 FASNP49327 2511 aaKnown RBP11.9□□□□□ -0.5
SFSWAP-203ENST00000535236 LINC00336Q6ZUF6 198 aa11.89□□□□□ -0.51
SFSWAP-203ENST00000535236 Q8N377 158 aa11.88□□□□□ -0.51
SFSWAP-203ENST00000535236 IGLV5-37A0A075B6J1 123 aa11.88□□□□□ -0.51
SFSWAP-203ENST00000535236 IGLV7-43P04211 117 aa11.88□□□□□ -0.51
SFSWAP-203ENST00000535236 TLX1NBP0CAT3 122 aa11.88□□□□□ -0.51
SFSWAP-203ENST00000535236 A8MUN3 132 aa11.87□□□□□ -0.51
SFSWAP-203ENST00000535236 CRIPTQ9P021 101 aa11.87□□□□□ -0.51
SFSWAP-203ENST00000535236 PLA2G2DQ9UNK4 145 aa11.87□□□□□ -0.51
SFSWAP-203ENST00000535236 ANAPC11Q9NYG5 84 aa11.86□□□□□ -0.51
SFSWAP-203ENST00000535236 CYP4F30PQ9H0H9 118 aa11.86□□□□□ -0.51
SFSWAP-203ENST00000535236 RBM12B-AS1Q9P1G2 102 aa11.86□□□□□ -0.51
SFSWAP-203ENST00000535236 A0A096LNT2 108 aa11.86□□□□□ -0.51
SFSWAP-203ENST00000535236 GIG44P09565 113 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-203ENST00000535236 POLQO75417 2590 aa11.85□□□□□ -0.51
SFSWAP-203ENST00000535236 A0A0G2JQZ4 141 aa11.84□□□□□ -0.51
SFSWAP-203ENST00000535236 A0A1W2PNN7 141 aa11.84□□□□□ -0.51
SFSWAP-203ENST00000535236 LINC00612Q8N6U2 182 aa11.84□□□□□ -0.51
SFSWAP-203ENST00000535236 ACANP16112 2415 aa11.83□□□□□ -0.52
SFSWAP-203ENST00000535236 EIF4EBP3O60516 100 aaPredicted RBP11.82□□□□□ -0.52
SFSWAP-203ENST00000535236 PSORS1C2Q9UIG4 136 aa11.82□□□□□ -0.52
SFSWAP-203ENST00000535236 MIR22HGQ0VDD5 57 aa11.82□□□□□ -0.52
SFSWAP-203ENST00000535236 PCSK5Q92824 1860 aa11.81□□□□□ -0.52
SFSWAP-203ENST00000535236 SPRR4Q96PI1 79 aa11.78□□□□□ -0.52
SFSWAP-203ENST00000535236 ZNF575Q86XF7 245 aa11.77□□□□□ -0.53
SFSWAP-203ENST00000535236 CNBPP62633 177 aaKnown RBP11.75□□□□□ -0.53
SFSWAP-203ENST00000535236 CASC10Q5T4H9 136 aa11.75□□□□□ -0.53
SFSWAP-203ENST00000535236 LINC01554Q52M75 96 aa11.73□□□□□ -0.53
SFSWAP-203ENST00000535236 KLKP1Q107X0 134 aa11.69□□□□□ -0.54
SFSWAP-203ENST00000535236 SRCAPQ6ZRS2 3230 aa11.68□□□□□ -0.54
SFSWAP-203ENST00000535236 IGLV5-48A0A075B6I7 105 aa11.66□□□□□ -0.54
SFSWAP-203ENST00000535236 Q8N1X5 172 aa11.66□□□□□ -0.54
SFSWAP-203ENST00000535236 FAM104AQ969W3 186 aa11.65□□□□□ -0.54
SFSWAP-203ENST00000535236 A0A0D9SG42 100 aa11.65□□□□□ -0.54
SFSWAP-203ENST00000535236 A0A1W2PNM2 257 aa11.64□□□□□ -0.55
SFSWAP-203ENST00000535236 KRTAP1-3Q8IUG1 177 aa11.61□□□□□ -0.55
SFSWAP-203ENST00000535236 CDC42SE1Q9NRR8 79 aa11.59□□□□□ -0.55
SFSWAP-203ENST00000535236 Q6ZSA8 131 aa11.59□□□□□ -0.55
SFSWAP-203ENST00000535236 TNP2Q05952 138 aa11.57□□□□□ -0.56
SFSWAP-203ENST00000535236 EP400Q96L91 3159 aa11.57□□□□□ -0.56
SFSWAP-203ENST00000535236 KRTAP1-1Q07627 177 aa11.56□□□□□ -0.56
SFSWAP-203ENST00000535236 CENPFP49454 3210 aa11.56□□□□□ -0.56
SFSWAP-203ENST00000535236 H7BZZ5 65 aa11.55□□□□□ -0.56
SFSWAP-203ENST00000535236 SPANXA2-OT1Q8N9U9 137 aa11.53□□□□□ -0.56
SFSWAP-203ENST00000535236 IGLV7-46A0A075B6I9 117 aa11.52□□□□□ -0.57
SFSWAP-203ENST00000535236 CD164Q04900 197 aa11.51□□□□□ -0.57
SFSWAP-203ENST00000535236 EPG5Q9HCE0 2579 aa11.5□□□□□ -0.57
SFSWAP-203ENST00000535236 PRR26Q8N8Z3 221 aa11.46□□□□□ -0.57
SFSWAP-203ENST00000535236 M0R2T5 61 aa11.45□□□□□ -0.58
SFSWAP-203ENST00000535236 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.43□□□□□ -0.58
SFSWAP-203ENST00000535236 MGAM2Q2M2H8 2515 aa11.43□□□□□ -0.58
SFSWAP-203ENST00000535236 CAMK2N1Q7Z7J9 78 aa11.41□□□□□ -0.58
SFSWAP-203ENST00000535236 USP24Q9UPU5 2620 aa11.4□□□□□ -0.58
SFSWAP-203ENST00000535236 HECTD1Q9ULT8 2610 aa11.39□□□□□ -0.59
SFSWAP-203ENST00000535236 FLNBO75369 2602 aaKnown RBP11.39□□□□□ -0.59
SFSWAP-203ENST00000535236 KTN1-AS1Q86SY8 53 aa11.39□□□□□ -0.59
SFSWAP-203ENST00000535236 LCA10Q71F78 164 aa11.38□□□□□ -0.59
SFSWAP-203ENST00000535236 FAM229BQ4G0N7 80 aa11.36□□□□□ -0.59
SFSWAP-203ENST00000535236 LUZP6Q538Z0 58 aa11.34□□□□□ -0.59
SFSWAP-203ENST00000535236 OCR1Q9BZK8 76 aa11.3□□□□□ -0.6
SFSWAP-203ENST00000535236 A0A1B0GU33 70 aa11.3□□□□□ -0.6
SFSWAP-203ENST00000535236 HRES1P13985 223 aa11.3□□□□□ -0.6
SFSWAP-203ENST00000535236 Q1T7F1 81 aa11.29□□□□□ -0.6
SFSWAP-203ENST00000535236 PLAC8Q9NZF1 115 aa11.28□□□□□ -0.6
SFSWAP-203ENST00000535236 LINC00483Q53H64 154 aa11.27□□□□□ -0.61
SFSWAP-203ENST00000535236 ZCCHC13Q8WW36 166 aaKnown RBP11.25□□□□□ -0.61
SFSWAP-203ENST00000535236 CSAG1Q6PB30 78 aa11.24□□□□□ -0.61
SFSWAP-203ENST00000535236 WIPF1O43516 503 aa11.23□□□□□ -0.61
SFSWAP-203ENST00000535236 CR1P17927 2039 aa11.22□□□□□ -0.61
SFSWAP-203ENST00000535236 S4R3F8 94 aa11.21□□□□□ -0.61
SFSWAP-203ENST00000535236 MMP24-AS1A0A0U1RRL7 71 aa11.17□□□□□ -0.62
SFSWAP-203ENST00000535236 Q8N9P0 234 aaPredicted RBP11.14□□□□□ -0.63
SFSWAP-203ENST00000535236 DMAC1Q96GE9 116 aa11.11□□□□□ -0.63
SFSWAP-203ENST00000535236 SPRR1AP35321 89 aa11.11□□□□□ -0.63
SFSWAP-203ENST00000535236 SEC61BP60468 96 aaKnown RBP11.1□□□□□ -0.63
SFSWAP-203ENST00000535236 Q75L30 129 aa11.08□□□□□ -0.64
SFSWAP-203ENST00000535236 ATRQ13535 2644 aa11.07□□□□□ -0.64
SFSWAP-203ENST00000535236 Q5VSD8 79 aa11.07□□□□□ -0.64
SFSWAP-203ENST00000535236 Q5W150 140 aa11.06□□□□□ -0.64
SFSWAP-203ENST00000535236 SPINK7P58062 85 aa11.06□□□□□ -0.64
SFSWAP-203ENST00000535236 FLNAP21333 2647 aaKnown RBP11.05□□□□□ -0.64
SFSWAP-203ENST00000535236 R4GN34 69 aa11.04□□□□□ -0.64
SFSWAP-203ENST00000535236 BPTFQ12830 3046 aa11.04□□□□□ -0.64
SFSWAP-203ENST00000535236 MAST4O15021 2626 aa11.04□□□□□ -0.64
SFSWAP-203ENST00000535236 Q8NDZ9 215 aa11.03□□□□□ -0.64
SFSWAP-203ENST00000535236 SPRR1BP22528 89 aa11.03□□□□□ -0.64
SFSWAP-203ENST00000535236 LINC01558Q9Y6Z2 57 aa11.03□□□□□ -0.64
SFSWAP-203ENST00000535236 LINC00472Q9H8W2 130 aa10.99□□□□□ -0.65
SFSWAP-203ENST00000535236 ITPR3Q14573 2671 aa10.98□□□□□ -0.65
SFSWAP-203ENST00000535236 LCE6AA0A183 80 aa10.97□□□□□ -0.65
SFSWAP-203ENST00000535236 KRTAP1-5Q9BYS1 174 aa10.97□□□□□ -0.65
SFSWAP-203ENST00000535236 HELZ2Q9BYK8 2649 aaKnown RBP10.94□□□□□ -0.66
SFSWAP-203ENST00000535236 KRTAP10-1P60331 282 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 165.3 ms