RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 HIGD2AQ9BW72 106 aa7.63□□□□□ -1.19
VPS28-216ENST00000533806 ETDCA0A1B0GVM5 59 aa7.62□□□□□ -1.19
VPS28-216ENST00000533806 S100A7L2Q5SY68 101 aa7.62□□□□□ -1.19
VPS28-216ENST00000533806 SCGB1D4Q6XE38 83 aa7.62□□□□□ -1.19
VPS28-216ENST00000533806 SPRR4Q96PI1 79 aa7.62□□□□□ -1.19
VPS28-216ENST00000533806 TRAV23DV6A0A075B6W5 121 aa7.61□□□□□ -1.19
VPS28-216ENST00000533806 IFITM1P13164 125 aa7.61□□□□□ -1.19
VPS28-216ENST00000533806 S100A12P80511 92 aa7.61□□□□□ -1.19
VPS28-216ENST00000533806 Q6ZVH6 145 aa7.61□□□□□ -1.19
VPS28-216ENST00000533806 Q9BRP9 147 aa7.61□□□□□ -1.19
VPS28-216ENST00000533806 ZNF73O43830 326 aaPredicted RBP7.6□□□□□ -1.19
VPS28-216ENST00000533806 Q6ZRX8 168 aa7.6□□□□□ -1.19
VPS28-216ENST00000533806 TYMSOSQ8TAI1 123 aa7.6□□□□□ -1.19
VPS28-216ENST00000533806 ERC2-IT1O76042 136 aa7.59□□□□□ -1.19
VPS28-216ENST00000533806 LINC00518Q8N0U6 118 aa7.59□□□□□ -1.19
VPS28-216ENST00000533806 SCGB1D1O95968 90 aa7.58□□□□□ -1.2
VPS28-216ENST00000533806 MUSTN1Q8IVN3 82 aa7.58□□□□□ -1.2
VPS28-216ENST00000533806 HSBP1L1C9JCN9 74 aa7.57□□□□□ -1.2
VPS28-216ENST00000533806 LINC00483Q53H64 154 aa7.57□□□□□ -1.2
VPS28-216ENST00000533806 COPS9Q8WXC6 57 aa7.57□□□□□ -1.2
VPS28-216ENST00000533806 ZNF706Q9Y5V0 76 aaPredicted RBP7.57□□□□□ -1.2
VPS28-216ENST00000533806 C3orf22Q8N5N4 141 aa7.56□□□□□ -1.2
VPS28-216ENST00000533806 CBY1Q9Y3M2 126 aa7.56□□□□□ -1.2
VPS28-216ENST00000533806 OR13C6PQ8NH95 151 aa7.55□□□□□ -1.2
VPS28-216ENST00000533806 JOSD1Q15040 202 aaPredicted RBP7.54□□□□□ -1.2
VPS28-216ENST00000533806 COX8AP10176 69 aa7.53□□□□□ -1.2
VPS28-216ENST00000533806 LPAP08519 4548 aa7.52□□□□□ -1.21
VPS28-216ENST00000533806 DLEU1O43261 78 aa7.52□□□□□ -1.21
VPS28-216ENST00000533806 CTAG1AP78358 180 aa7.52□□□□□ -1.21
VPS28-216ENST00000533806 LINC00304Q8N9R0 145 aa7.52□□□□□ -1.21
VPS28-216ENST00000533806 RNF213Q63HN8 5207 aa7.51□□□□□ -1.21
VPS28-216ENST00000533806 TSPAN13O95857 204 aa7.51□□□□□ -1.21
VPS28-216ENST00000533806 HINT1P49773 126 aaPredicted RBP7.51□□□□□ -1.21
VPS28-216ENST00000533806 ELOF1P60002 83 aaKnown RBP7.51□□□□□ -1.21
VPS28-216ENST00000533806 C6orf99Q4VX62 202 aa7.51□□□□□ -1.21
VPS28-216ENST00000533806 TRBV7-6A0A0J9YX20 115 aa7.5□□□□□ -1.21
VPS28-216ENST00000533806 GAGE2AQ6NT46 116 aa7.5□□□□□ -1.21
VPS28-216ENST00000533806 TRAV13-2A0A0B4J235 113 aa7.49□□□□□ -1.21
VPS28-216ENST00000533806 A6NDN8 102 aa7.49□□□□□ -1.21
VPS28-216ENST00000533806 ST20-AS1Q8NBB2 130 aa7.49□□□□□ -1.21
VPS28-216ENST00000533806 DHRS4-AS1Q9P1J3 65 aa7.49□□□□□ -1.21
VPS28-216ENST00000533806 A4D1N5 150 aa7.48□□□□□ -1.21
VPS28-216ENST00000533806 SPRR1BP22528 89 aa7.48□□□□□ -1.21
VPS28-216ENST00000533806 COX7BP24311 80 aa7.48□□□□□ -1.21
VPS28-216ENST00000533806 SPATA45Q537H7 98 aa7.47□□□□□ -1.21
VPS28-216ENST00000533806 SMIM11BQ8TCY0 68 aa7.47□□□□□ -1.21
VPS28-216ENST00000533806 C14orf144Q96I85 54 aa7.47□□□□□ -1.21
VPS28-216ENST00000533806 PAM16Q9Y3D7 125 aa7.47□□□□□ -1.21
VPS28-216ENST00000533806 PYY3Q5JQD4 70 aa7.46□□□□□ -1.22
VPS28-216ENST00000533806 SPAG11AQ6PDA7 123 aa7.46□□□□□ -1.22
VPS28-216ENST00000533806 A0A1B0GWB2 263 aa7.45□□□□□ -1.22
VPS28-216ENST00000533806 C2orf91Q6ZV80 131 aa7.45□□□□□ -1.22
VPS28-216ENST00000533806 SSBP3-AS1Q7Z2R9 100 aa7.45□□□□□ -1.22
VPS28-216ENST00000533806 Q8NBF4 154 aa7.45□□□□□ -1.22
VPS28-216ENST00000533806 VAMP8Q9BV40 100 aa7.45□□□□□ -1.22
VPS28-216ENST00000533806 HIGD1BQ9P298 99 aa7.45□□□□□ -1.22
VPS28-216ENST00000533806 PRR4Q16378 134 aa7.44□□□□□ -1.22
VPS28-216ENST00000533806 HIST1H4GQ99525 98 aa7.44□□□□□ -1.22
VPS28-216ENST00000533806 IGLV9-49A0A0B4J1Y8 123 aa7.43□□□□□ -1.22
VPS28-216ENST00000533806 MOBPQ13875 183 aa7.43□□□□□ -1.22
VPS28-216ENST00000533806 SLC25A34Q6PIV7 304 aa7.43□□□□□ -1.22
VPS28-216ENST00000533806 LINC01547P58512 204 aaPredicted RBP7.42□□□□□ -1.22
VPS28-216ENST00000533806 TMA7Q9Y2S6 64 aaKnown RBP7.42□□□□□ -1.22
VPS28-216ENST00000533806 SPINK1P00995 79 aa7.41□□□□□ -1.22
VPS28-216ENST00000533806 IGLV5-48A0A075B6I7 105 aa7.4□□□□□ -1.22
VPS28-216ENST00000533806 RETNLBQ9BQ08 111 aa7.4□□□□□ -1.22
VPS28-216ENST00000533806 CFC1BP0CG36 223 aa7.39□□□□□ -1.23
VPS28-216ENST00000533806 CFC1P0CG37 223 aa7.39□□□□□ -1.23
VPS28-216ENST00000533806 RPS29P62273 56 aaKnown RBP7.39□□□□□ -1.23
VPS28-216ENST00000533806 C4orf48Q5BLP8 95 aa7.39□□□□□ -1.23
VPS28-216ENST00000533806 SMIM29Q86T20 159 aa7.39□□□□□ -1.23
VPS28-216ENST00000533806 C12orf57Q99622 126 aa7.39□□□□□ -1.23
VPS28-216ENST00000533806 TEX49A0A1B0GTD5 131 aa7.38□□□□□ -1.23
VPS28-216ENST00000533806 TAL2Q16559 108 aa7.38□□□□□ -1.23
VPS28-216ENST00000533806 LINC00575Q6W349 94 aa7.37□□□□□ -1.23
VPS28-216ENST00000533806 VAMP3Q15836 100 aa7.36□□□□□ -1.23
VPS28-216ENST00000533806 DEFB105AQ8NG35 78 aa7.36□□□□□ -1.23
VPS28-216ENST00000533806 NHP2Q9NX24 153 aaKnown RBP7.36□□□□□ -1.23
VPS28-216ENST00000533806 A0A0B4J2C4 111 aa7.35□□□□□ -1.23
VPS28-216ENST00000533806 C9orf153Q5TBE3 101 aa7.35□□□□□ -1.23
VPS28-216ENST00000533806 CEND1Q8N111 149 aa7.35□□□□□ -1.23
VPS28-216ENST00000533806 Q8N377 158 aa7.35□□□□□ -1.23
VPS28-216ENST00000533806 LAMTOR3Q9UHA4 124 aa7.35□□□□□ -1.23
VPS28-216ENST00000533806 MUC2Q02817 5179 aa7.33□□□□□ -1.24
VPS28-216ENST00000533806 IGLV7-46A0A075B6I9 117 aa7.33□□□□□ -1.24
VPS28-216ENST00000533806 TPRXLQ17RH7 258 aa7.33□□□□□ -1.24
VPS28-216ENST00000533806 Q1RN00 199 aa7.33□□□□□ -1.24
VPS28-216ENST00000533806 FP248Q71RG6 208 aaPredicted RBP7.33□□□□□ -1.24
VPS28-216ENST00000533806 hADV29S1A0JD25 119 aa7.32□□□□□ -1.24
VPS28-216ENST00000533806 SLC25A20O43772 301 aa7.32□□□□□ -1.24
VPS28-216ENST00000533806 FXYD2P54710 66 aa7.32□□□□□ -1.24
VPS28-216ENST00000533806 BVES-AS1Q5T3Y7 98 aa7.32□□□□□ -1.24
VPS28-216ENST00000533806 RAB37Q96AX2 223 aa7.31□□□□□ -1.24
VPS28-216ENST00000533806 Q6ZQY7 126 aa7.3□□□□□ -1.24
VPS28-216ENST00000533806 CD164Q04900 197 aa7.29□□□□□ -1.24
VPS28-216ENST00000533806 HSD52Q0P140 79 aa7.29□□□□□ -1.24
VPS28-216ENST00000533806 PRO1933Q9H354 126 aa7.29□□□□□ -1.24
VPS28-216ENST00000533806 PRO1854Q9UHT4 67 aa7.29□□□□□ -1.24
VPS28-216ENST00000533806 TMEM238LA0A1B0GVL6 79 aa7.28□□□□□ -1.24
VPS28-216ENST00000533806 A6NJY4 79 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms