RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 KRTAP21-3Q3LHN1 58 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 IGFL1Q6UW32 110 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 C5orf56Q8N8D9 126 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 ARHGAP5-AS1Q96IT6 56 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 DNAJC13O75165 2243 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 CABIN1Q9Y6J0 2220 aa1.24□□□□□ -2.21
CD44-216ENST00000525293 MDC1Q14676 2089 aaKnown RBP1.24□□□□□ -2.21
CD44-216ENST00000525293 MYO7AQ13402 2215 aa1.23□□□□□ -2.21
CD44-216ENST00000525293 TRGV2A0A075B6R0 118 aa1.23□□□□□ -2.21
CD44-216ENST00000525293 LOC110117498A0A087WWA1 95 aa1.23□□□□□ -2.21
CD44-216ENST00000525293 ETDCA0A1B0GVM5 59 aa1.23□□□□□ -2.21
CD44-216ENST00000525293 RPL37AP61513 92 aaKnown RBP1.23□□□□□ -2.21
CD44-216ENST00000525293 CCL26Q9Y258 94 aa1.23□□□□□ -2.21
CD44-216ENST00000525293 COL5A1P20908 1838 aaPredicted RBP1.23□□□□□ -2.21
CD44-216ENST00000525293 HYDINQ4G0P3 5121 aa1.23□□□□□ -2.21
CD44-216ENST00000525293 UTRNP46939 3433 aa1.23□□□□□ -2.21
CD44-216ENST00000525293 FSIP2Q5CZC0 6907 aa1.23□□□□□ -2.21
CD44-216ENST00000525293 POLQO75417 2590 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 ZFYVE26Q68DK2 2539 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 BIRC6Q9NR09 4857 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 TENM1Q9UKZ4 2725 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 IGKV2-40A0A087WW87 121 aaPredicted RBP1.22□□□□□ -2.21
CD44-216ENST00000525293 A0A1B0GU69 56 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 H0YGX0 51 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 IGKV2D-40P01614 121 aaPredicted RBP1.22□□□□□ -2.21
CD44-216ENST00000525293 HRES1P13985 223 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 COX7BP24311 80 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 LINC01590Q5TEZ4 76 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 FAM208BQ5VWN6 2430 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 CREBBPQ92793 2442 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 ATRQ13535 2644 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 RYR2Q92736 4967 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 FLNCQ14315 2725 aa1.22□□□□□ -2.21
CD44-216ENST00000525293 BOD1L1Q8NFC6 3051 aa1.21□□□□□ -2.21
CD44-216ENST00000525293 SDK1Q7Z5N4 2213 aa1.21□□□□□ -2.21
CD44-216ENST00000525293 FLNAP21333 2647 aaKnown RBP1.21□□□□□ -2.22
CD44-216ENST00000525293 COL4A5P29400 1685 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 LMO7Q8WWI1 1683 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 A0A1W2PNN7 141 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 IGLV6-57P01721 117 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 DEFB132Q7Z7B7 95 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 LINC00308Q8TCZ7 52 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 PRO3102Q9H379 93 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 KCNQ1DNQ9H478 68 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 CRIPTQ9P021 101 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 ZDBF2Q9HCK1 2354 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 MED12Q93074 2177 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 NEBP20929 6669 aa1.21□□□□□ -2.22
CD44-216ENST00000525293 FBN2P35556 2912 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 PLXNB2O15031 1838 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 DEFB114Q30KQ6 69 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 SMIM2Q9BVW6 85 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 HIVEP3Q5T1R4 2406 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 A0A0G2JMZ2 1700 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 LRRC37A2A6NM11 1700 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 LRRC37AA6NMS7 1700 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 ZANQ9Y493 2812 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 CACNA1DQ01668 2161 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 UNC80Q8N2C7 3258 aa1.2□□□□□ -2.22
CD44-216ENST00000525293 SPTBN5Q9NRC6 3674 aaKnown RBP1.19□□□□□ -2.22
CD44-216ENST00000525293 PDZD2O15018 2839 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 GOLGB1Q14789 3259 aaKnown RBP1.19□□□□□ -2.22
CD44-216ENST00000525293 ACYP2P14621 99 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 LINC00158P58513 81 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 Q6ZQY7 126 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 SSBP3-AS1Q7Z2R9 100 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 SMIM11BQ8TCY0 68 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 CCL19Q99731 98 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 PSORS1C2Q9UIG4 136 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 CFAP46Q8IYW2 2715 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 ABCA4P78363 2273 aa1.19□□□□□ -2.22
CD44-216ENST00000525293 TPRP12270 2363 aaKnown RBP1.19□□□□□ -2.22
CD44-216ENST00000525293 NUP214P35658 2090 aaPredicted RBP1.19□□□□□ -2.22
CD44-216ENST00000525293 ARFGEF3Q5TH69 2177 aa1.18□□□□□ -2.22
CD44-216ENST00000525293 FBN1P35555 2871 aaKnown RBP1.18□□□□□ -2.22
CD44-216ENST00000525293 GVINP1Q7Z2Y8 2422 aa1.18□□□□□ -2.22
CD44-216ENST00000525293 KMT2CQ8NEZ4 4911 aaKnown RBP1.18□□□□□ -2.22
CD44-216ENST00000525293 G3V318 75 aa1.18□□□□□ -2.22
CD44-216ENST00000525293 RPS27P42677 84 aaKnown RBP1.18□□□□□ -2.22
CD44-216ENST00000525293 SPINK9Q5DT21 86 aa1.18□□□□□ -2.22
CD44-216ENST00000525293 CDKN2A-AS1Q9UH64 79 aa1.18□□□□□ -2.22
CD44-216ENST00000525293 MKI67P46013 3256 aaKnown RBP1.18□□□□□ -2.22
CD44-216ENST00000525293 DOCK10Q96BY6 2186 aa1.18□□□□□ -2.22
CD44-216ENST00000525293 KIAA0100Q14667 2235 aaKnown RBP1.17□□□□□ -2.22
CD44-216ENST00000525293 NBEAL1Q6ZS30 2694 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 FREM1Q5H8C1 2179 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 CEP192Q8TEP8 1941 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 H3BRN7 92 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 CCL22O00626 93 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 NDUFA1O15239 70 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 COX17Q14061 63 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 DEFB134Q4QY38 66 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 C10orf55Q5SWW7 151 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 C4orf3Q8WVX3 66 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 CNFNQ9BYD5 112 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 SPTAN1Q13813 2472 aaKnown RBP1.17□□□□□ -2.22
CD44-216ENST00000525293 UNC13CQ8NB66 2214 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 PKD1L1Q8TDX9 2849 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 PCNX1Q96RV3 2341 aa1.17□□□□□ -2.22
CD44-216ENST00000525293 ABCA13Q86UQ4 5058 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms