RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 TRAV12-2A0A075B6T6 113 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 TRAV21A0A0B4J279 112 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 IGHV1-58A0A0C4DH39 117 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 CLPSL1A2RUU4 121 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 BUB1B-PAK6H3BSN5 160 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 NDUFB3O43676 98 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 BCE1O60756 84 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 MGPP08493 103 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 RNASE3P12724 160 aaKnown RBP3.89□□□□□ -1.79
LSM1-202ENST00000520286 CNEP1R1Q8N9A8 125 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 C16orf95Q9H693 158 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 TENM1Q9UKZ4 2725 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 ARFGEF3Q5TH69 2177 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 MALRD1Q5VYJ5 2156 aa3.89□□□□□ -1.79
LSM1-202ENST00000520286 NPC2P61916 151 aa3.88□□□□□ -1.79
LSM1-202ENST00000520286 NDUFA12Q9UI09 145 aa3.88□□□□□ -1.79
LSM1-202ENST00000520286 UBE2D4Q9Y2X8 147 aa3.88□□□□□ -1.79
LSM1-202ENST00000520286 FAM236DA0A1B0GTK5 79 aa3.87□□□□□ -1.79
LSM1-202ENST00000520286 NDUFA1O15239 70 aa3.87□□□□□ -1.79
LSM1-202ENST00000520286 BAALC-AS2P0C853 105 aa3.87□□□□□ -1.79
LSM1-202ENST00000520286 FAM236CP0DP71 79 aa3.87□□□□□ -1.79
LSM1-202ENST00000520286 ATP5EP2Q5VTU8 51 aa3.87□□□□□ -1.79
LSM1-202ENST00000520286 VMO1Q7Z5L0 202 aa3.87□□□□□ -1.79
LSM1-202ENST00000520286 Q8N2B8 174 aa3.87□□□□□ -1.79
LSM1-202ENST00000520286 IGKV2-24A0A0C4DH68 120 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 FAM223BA6NKX1 122 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 M0R1W7 72 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 LINC00313P59037 77 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 Q8N6K4 173 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 LINC00304Q8N9R0 145 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 Q8NAQ8 132 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 ARHGAP32A7KAX9 2087 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 MUC4Q99102 2169 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 ROS1P08922 2347 aa3.86□□□□□ -1.79
LSM1-202ENST00000520286 CR1P17927 2039 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 IGHV3-64A0A075B6Q5 118 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 TRBV10-3A0A0K0K1G6 114 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 A0A1B0GU33 70 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 E7EQL1 145 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 H7BZZ5 65 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 M0QY20 66 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 LY6HO94772 140 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 S100A4P26447 101 aaKnown RBP3.85□□□□□ -1.79
LSM1-202ENST00000520286 LYPD5Q6UWN5 251 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 FP248Q71RG6 208 aaPredicted RBP3.85□□□□□ -1.79
LSM1-202ENST00000520286 LINC00308Q8TCZ7 52 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 COPS9Q8WXC6 57 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 LCE3DQ9BYE3 92 aa3.85□□□□□ -1.79
LSM1-202ENST00000520286 KMT2CQ8NEZ4 4911 aaKnown RBP3.84□□□□□ -1.79
LSM1-202ENST00000520286 ODF3BA8MYP8 253 aa3.84□□□□□ -1.79
LSM1-202ENST00000520286 DNAL4O96015 105 aa3.84□□□□□ -1.79
LSM1-202ENST00000520286 IGLV6-57P01721 117 aa3.84□□□□□ -1.79
LSM1-202ENST00000520286 RPL28P46779 137 aaKnown RBP3.84□□□□□ -1.79
LSM1-202ENST00000520286 SCXQ7RTU7 201 aa3.84□□□□□ -1.79
LSM1-202ENST00000520286 TM2D3Q9BRN9 247 aa3.84□□□□□ -1.79
LSM1-202ENST00000520286 LINC00846Q9NV44 126 aa3.84□□□□□ -1.79
LSM1-202ENST00000520286 RYR3Q15413 4870 aa3.84□□□□□ -1.79
LSM1-202ENST00000520286 A0A087WVE0 104 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 IGKV3D-7A0A0C4DH55 119 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 A0A1W2PNN7 141 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 GNRH2O43555 120 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 XCL1P47992 114 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 ATP5EP56381 51 aaPredicted RBP3.83□□□□□ -1.8
LSM1-202ENST00000520286 KLKP1Q107X0 134 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 S100A7L2Q5SY68 101 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 SOSTDC1Q6X4U4 206 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 LY6G5BQ8NDX9 201 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 VWFP04275 2813 aa3.83□□□□□ -1.8
LSM1-202ENST00000520286 TRAV7A0A075B6U4 112 aa3.82□□□□□ -1.8
LSM1-202ENST00000520286 KNCNA6PVL3 124 aa3.82□□□□□ -1.8
LSM1-202ENST00000520286 B4DSR2 109 aa3.82□□□□□ -1.8
LSM1-202ENST00000520286 KRTAP10-8P60410 259 aa3.82□□□□□ -1.8
LSM1-202ENST00000520286 C1orf195Q5TG92 126 aa3.82□□□□□ -1.8
LSM1-202ENST00000520286 FAM223AQ8IWN6 122 aa3.82□□□□□ -1.8
LSM1-202ENST00000520286 BPESC1Q9GZL8 116 aa3.82□□□□□ -1.8
LSM1-202ENST00000520286 PSCAO43653 123 aa3.81□□□□□ -1.8
LSM1-202ENST00000520286 CIRBPQ14011 172 aaKnown RBP3.81□□□□□ -1.8
LSM1-202ENST00000520286 C1orf158Q8N1D5 194 aa3.81□□□□□ -1.8
LSM1-202ENST00000520286 HIGD2AQ9BW72 106 aa3.81□□□□□ -1.8
LSM1-202ENST00000520286 WNK1Q9H4A3 2382 aa3.81□□□□□ -1.8
LSM1-202ENST00000520286 TRAV13-2A0A0B4J235 113 aa3.8□□□□□ -1.8
LSM1-202ENST00000520286 TRAV12-3A0A0B4J271 114 aa3.8□□□□□ -1.8
LSM1-202ENST00000520286 CCKP06307 115 aa3.8□□□□□ -1.8
LSM1-202ENST00000520286 SS18Q15532 418 aa3.8□□□□□ -1.8
LSM1-202ENST00000520286 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.8□□□□□ -1.8
LSM1-202ENST00000520286 MUC7Q8TAX7 377 aa3.8□□□□□ -1.8
LSM1-202ENST00000520286 ZNF625Q96I27 306 aaPredicted RBP3.8□□□□□ -1.8
LSM1-202ENST00000520286 C14orf132Q9NPU4 83 aa3.8□□□□□ -1.8
LSM1-202ENST00000520286 PKIGQ9Y2B9 76 aa3.8□□□□□ -1.8
LSM1-202ENST00000520286 TRRAPQ9Y4A5 3859 aa3.79□□□□□ -1.8
LSM1-202ENST00000520286 IBA57-AS1B1ANH7 110 aa3.79□□□□□ -1.8
LSM1-202ENST00000520286 H0YGX0 51 aa3.79□□□□□ -1.8
LSM1-202ENST00000520286 NDUFC1O43677 76 aa3.79□□□□□ -1.8
LSM1-202ENST00000520286 C20orf197Q8N268 126 aa3.79□□□□□ -1.8
LSM1-202ENST00000520286 MSMBP08118 114 aa3.78□□□□□ -1.8
LSM1-202ENST00000520286 MINOS1Q5TGZ0 78 aa3.78□□□□□ -1.8
LSM1-202ENST00000520286 DEFB104AQ8WTQ1 72 aa3.78□□□□□ -1.8
LSM1-202ENST00000520286 CDKN2A-AS1Q9UH64 79 aa3.78□□□□□ -1.8
LSM1-202ENST00000520286 MINOS1-NBL1R4GNA1 71 aa3.78□□□□□ -1.8
LSM1-202ENST00000520286 PRKDCP78527 4128 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms